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Ras-related protein RABD2a (AtRABD2a) (Ras-related protein Ara-5) (Ras-related protein Rab1B) (AtRab1B)

 RAD2A_ARATH             Reviewed;         203 AA.
P28188; Q940Z7;
01-DEC-1992, integrated into UniProtKB/Swiss-Prot.
02-SEP-2008, sequence version 3.
23-MAY-2018, entry version 147.
RecName: Full=Ras-related protein RABD2a;
Short=AtRABD2a;
AltName: Full=Ras-related protein Ara-5;
AltName: Full=Ras-related protein Rab1B;
Short=AtRab1B;
Name=RABD2A; Synonyms=ARA-5, RAB1B; OrderedLocusNames=At1g02130;
ORFNames=T7I23.6;
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=11130712; DOI=10.1038/35048500;
Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S.,
White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y.,
Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W.,
Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K.,
Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y.,
Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L.,
Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E.,
Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B.,
Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P.,
Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A.,
Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I.,
Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D.,
Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M.,
Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M.,
Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.;
"Sequence and analysis of chromosome 1 of the plant Arabidopsis
thaliana.";
Nature 408:816-820(2000).
[2]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
PubMed=27862469; DOI=10.1111/tpj.13415;
Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
Town C.D.;
"Araport11: a complete reannotation of the Arabidopsis thaliana
reference genome.";
Plant J. 89:789-804(2017).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
PubMed=14593172; DOI=10.1126/science.1088305;
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J.,
Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F.,
Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.,
Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J.,
Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y.,
Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P.,
Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F.,
Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M.,
Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J.,
Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T.,
Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y.,
Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis
genome.";
Science 302:842-846(2003).
[4]
NUCLEOTIDE SEQUENCE [MRNA] OF 9-203.
STRAIN=cv. Columbia, cv. En-1, cv. Est, cv. Landsberg erecta, and
cv. Lapalmam; TISSUE=Leaf;
PubMed=1748311; DOI=10.1016/0378-1119(91)90442-E;
Anai T., Hasegawa K., Watanabe Y., Uchimiya H., Ishizaki R.,
Matsui M.;
"Isolation and analysis of cDNAs encoding small GTP-binding proteins
of Arabidopsis thaliana.";
Gene 108:259-264(1991).
[5]
FUNCTION, AND MUTAGENESIS OF ASN-121.
PubMed=11090219; DOI=10.1105/tpc.12.11.2201;
Batoko H., Zheng H.-Q., Hawes C., Moore I.;
"A rab1 GTPase is required for transport between the endoplasmic
reticulum and Golgi apparatus and for normal Golgi movement in
plants.";
Plant Cell 12:2201-2218(2000).
[6]
FUNCTION.
PubMed=11874578; DOI=10.1046/j.0960-7412.2002.01252.x;
Saint-Jore C.M., Evins J., Batoko H., Brandizzi F., Moore I.,
Hawes C.;
"Redistribution of membrane proteins between the Golgi apparatus and
endoplasmic reticulum in plants is reversible and not dependent on
cytoskeletal networks.";
Plant J. 29:661-678(2002).
[7]
GENE FAMILY, AND NOMENCLATURE.
PubMed=12644670; DOI=10.1104/pp.013052;
Vernoud V., Horton A.C., Yang Z., Nielsen E.;
"Analysis of the small GTPase gene superfamily of Arabidopsis.";
Plant Physiol. 131:1191-1208(2003).
[8]
INTERACTION WITH GC5.
PubMed=18182439; DOI=10.1093/jxb/erm304;
Latijnhouwers M., Gillespie T., Boevink P., Kriechbaumer V., Hawes C.,
Carvalho C.M.;
"Localization and domain characterization of Arabidopsis golgin
candidates.";
J. Exp. Bot. 58:4373-4386(2007).
[9]
SUBCELLULAR LOCATION.
PubMed=19789181; DOI=10.1242/jcs.050625;
Pinheiro H., Samalova M., Geldner N., Chory J., Martinez A., Moore I.;
"Genetic evidence that the higher plant Rab-D1 and Rab-D2 GTPases
exhibit distinct but overlapping interactions in the early secretory
pathway.";
J. Cell Sci. 122:3749-3758(2009).
-!- FUNCTION: Protein transport. Regulator of membrane traffic from
the Golgi apparatus towards the endoplasmic reticulum (ER).
{ECO:0000269|PubMed:11090219, ECO:0000269|PubMed:11874578}.
-!- SUBUNIT: Does not interact with GC5.
-!- SUBCELLULAR LOCATION: Golgi apparatus, trans-Golgi network
membrane {ECO:0000269|PubMed:19789181}. Golgi apparatus membrane
{ECO:0000305|PubMed:19789181}; Lipid-anchor
{ECO:0000305|PubMed:19789181}.
-!- SIMILARITY: Belongs to the small GTPase superfamily. Rab family.
{ECO:0000305}.
-!- SEQUENCE CAUTION:
Sequence=AAC24370.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
-----------------------------------------------------------------------
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EMBL; U89959; AAC24370.1; ALT_SEQ; Genomic_DNA.
EMBL; CP002684; AEE27387.1; -; Genomic_DNA.
EMBL; AY052333; AAK96526.1; -; mRNA.
EMBL; AY061905; AAL31232.1; -; mRNA.
EMBL; D01027; BAA00832.1; -; mRNA.
PIR; B86153; B86153.
PIR; PS0279; PS0279.
RefSeq; NP_171715.1; NM_100093.4.
UniGene; At.21490; -.
ProteinModelPortal; P28188; -.
SMR; P28188; -.
BioGrid; 22265; 1.
IntAct; P28188; 1.
MINT; P28188; -.
STRING; 3702.AT1G02130.1; -.
iPTMnet; P28188; -.
PaxDb; P28188; -.
PRIDE; P28188; -.
EnsemblPlants; AT1G02130.1; AT1G02130.1; AT1G02130.
GeneID; 837023; -.
Gramene; AT1G02130.1; AT1G02130.1; AT1G02130.
KEGG; ath:AT1G02130; -.
Araport; AT1G02130; -.
TAIR; locus:2205603; AT1G02130.
eggNOG; KOG0084; Eukaryota.
eggNOG; ENOG410XQN5; LUCA.
HOGENOM; HOG000233968; -.
InParanoid; P28188; -.
KO; K07874; -.
OMA; NRMATQP; -.
OrthoDB; EOG09360N3E; -.
PhylomeDB; P28188; -.
Reactome; R-ATH-204005; COPII-mediated vesicle transport.
Reactome; R-ATH-6807878; COPI-mediated anterograde transport.
Reactome; R-ATH-6811434; COPI-dependent Golgi-to-ER retrograde traffic.
Reactome; R-ATH-8873719; RAB geranylgeranylation.
Reactome; R-ATH-8876198; RAB GEFs exchange GTP for GDP on RABs.
PRO; PR:P28188; -.
Proteomes; UP000006548; Chromosome 1.
ExpressionAtlas; P28188; baseline and differential.
Genevisible; P28188; AT.
GO; GO:0005789; C:endoplasmic reticulum membrane; IBA:GO_Central.
GO; GO:0000139; C:Golgi membrane; IDA:UniProtKB.
GO; GO:0005886; C:plasma membrane; IDA:TAIR.
GO; GO:0032588; C:trans-Golgi network membrane; IDA:UniProtKB.
GO; GO:0005773; C:vacuole; IDA:TAIR.
GO; GO:0005525; F:GTP binding; IEA:UniProtKB-KW.
GO; GO:0003924; F:GTPase activity; IEA:InterPro.
GO; GO:0006888; P:ER to Golgi vesicle-mediated transport; IDA:TAIR.
GO; GO:0015031; P:protein transport; IEA:UniProtKB-KW.
GO; GO:0046686; P:response to cadmium ion; IEP:TAIR.
InterPro; IPR027417; P-loop_NTPase.
InterPro; IPR005225; Small_GTP-bd_dom.
InterPro; IPR001806; Small_GTPase.
Pfam; PF00071; Ras; 1.
SUPFAM; SSF52540; SSF52540; 1.
TIGRFAMs; TIGR00231; small_GTP; 1.
PROSITE; PS51419; RAB; 1.
1: Evidence at protein level;
Complete proteome; ER-Golgi transport; Golgi apparatus; GTP-binding;
Lipoprotein; Membrane; Nucleotide-binding; Prenylation;
Protein transport; Reference proteome; Transport.
CHAIN 1 203 Ras-related protein RABD2a.
/FTId=PRO_0000121292.
NP_BIND 15 23 GTP. {ECO:0000250|UniProtKB:P62820}.
NP_BIND 33 40 GTP. {ECO:0000250|UniProtKB:P62820}.
NP_BIND 63 67 GTP. {ECO:0000250|UniProtKB:P62820}.
NP_BIND 121 124 GTP. {ECO:0000250|UniProtKB:P62820}.
NP_BIND 151 153 GTP. {ECO:0000250|UniProtKB:P62820}.
MOTIF 37 45 Effector region. {ECO:0000250}.
LIPID 200 200 S-geranylgeranyl cysteine. {ECO:0000250}.
LIPID 201 201 S-geranylgeranyl cysteine. {ECO:0000250}.
MUTAGEN 121 121 N->I: Inhibits trafficking between the ER
and Golgi. {ECO:0000269|PubMed:11090219}.
SEQUENCE 203 AA; 22648 MW; 85A2870837300B8D CRC64;
MNPEYDYLFK LLLIGDSGVG KSCLLLRFSD DSYVESYIST IGVDFKIRTV EQDGKTIKLQ
IWDTAGQERF RTITSSYYRG AHGIIIVYDV TDEESFNNVK QWLSEIDRYA SDNVNKLLVG
NKSDLTENRA IPYETAKAFA DEIGIPFMET SAKDATNVEQ AFMAMSASIK ERMASQPAGN
NARPPTVQIR GQPVAQKNGC CST


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