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Receptor for activated C kinase 1B (Guanine nucleotide-binding protein subunit beta-like protein B)

 GPLPB_ARATH             Reviewed;         326 AA.
Q9C4Z6; Q42130; Q8LAF2;
11-JAN-2011, integrated into UniProtKB/Swiss-Prot.
01-JUN-2001, sequence version 1.
07-JUN-2017, entry version 106.
RecName: Full=Receptor for activated C kinase 1B {ECO:0000303|PubMed:16829549};
AltName: Full=Guanine nucleotide-binding protein subunit beta-like protein B;
Name=RACK1B {ECO:0000303|PubMed:16829549};
OrderedLocusNames=At1g48630 {ECO:0000312|Araport:AT1G48630};
ORFNames=F11I4.18 {ECO:0000312|EMBL:AAG60127.1},
F9P7.2 {ECO:0000312|EMBL:AAG50846.1};
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=11130712; DOI=10.1038/35048500;
Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S.,
White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y.,
Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W.,
Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K.,
Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y.,
Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L.,
Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E.,
Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B.,
Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P.,
Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A.,
Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I.,
Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D.,
Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M.,
Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M.,
Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.;
"Sequence and analysis of chromosome 1 of the plant Arabidopsis
thaliana.";
Nature 408:816-820(2000).
[2]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
The Arabidopsis Information Portal (Araport);
Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
PubMed=14593172; DOI=10.1126/science.1088305;
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J.,
Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F.,
Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.,
Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J.,
Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y.,
Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P.,
Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F.,
Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M.,
Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J.,
Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T.,
Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y.,
Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis
genome.";
Science 302:842-846(2003).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
Feldmann K.A.;
"Full-length cDNA from Arabidopsis thaliana.";
Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 263-326.
STRAIN=cv. Columbia;
PubMed=8281187; DOI=10.1046/j.1365-313X.1993.04061051.x;
Hoefte H., Desprez T., Amselem J., Chiapello H., Rouze P., Caboche M.,
Moisan A., Jourjon M.-F., Charpenteau J.-L., Berthomieu P.,
Guerrier D., Giraudat J., Quigley F., Thomas F., Yu D.-Y., Mache R.,
Raynal M., Cooke R., Grellet F., Delseny M., Parmentier Y.,
de Marcillac G., Gigot C., Fleck J., Philipps G., Axelos M.,
Bardet C., Tremousaygue D., Lescure B.;
"An inventory of 1152 expressed sequence tags obtained by partial
sequencing of cDNAs from Arabidopsis thaliana.";
Plant J. 4:1051-1061(1993).
[6]
TISSUE SPECIFICITY.
PubMed=16829549; DOI=10.1093/jxb/erl035;
Chen J.G., Ullah H., Temple B., Liang J., Guo J., Alonso J.M.,
Ecker J.R., Jones A.M.;
"RACK1 mediates multiple hormone responsiveness and developmental
processes in Arabidopsis.";
J. Exp. Bot. 57:2697-2708(2006).
[7]
FUNCTION, TISSUE SPECIFICITY, AND DISRUPTION PHENOTYPE.
PubMed=18947417; DOI=10.1186/1471-2229-8-108;
Guo J., Chen J.G.;
"RACK1 genes regulate plant development with unequal genetic
redundancy in Arabidopsis.";
BMC Plant Biol. 8:108-108(2008).
[8]
FUNCTION, AND INTERACTION WITH GB1; MEKK1; MKK4; MKK5; MPK3 AND MPK6.
PubMed=25731164; DOI=10.1038/nature14243;
Cheng Z., Li J.F., Niu Y., Zhang X.C., Woody O.Z., Xiong Y.,
Djonovic S., Millet Y., Bush J., McConkey B.J., Sheen J.,
Ausubel F.M.;
"Pathogen-secreted proteases activate a novel plant immune pathway.";
Nature 521:213-216(2015).
-!- FUNCTION: Minor component of the RACK1 regulatory proteins that
play a role in multiple signal transduction pathways. Involved in
multiple hormone responses and developmental processes
(PubMed:18947417). MAPK cascade scaffolding protein involved in
the protease IV and ArgC signaling pathway but not the flg22
pathway (PubMed:25731164). {ECO:0000269|PubMed:18947417,
ECO:0000269|PubMed:25731164}.
-!- SUBUNIT: Homodimer and heterodimer with RACK1A or RACK1B
(Probable). Interacts with GB1, MEKK1, MKK4, MKK5, MPK3 and MPK6,
but not with GPA1 or MPK4 (PubMed:25731164).
{ECO:0000269|PubMed:25731164, ECO:0000305}.
-!- TISSUE SPECIFICITY: Widely expressed.
{ECO:0000269|PubMed:16829549, ECO:0000269|PubMed:18947417}.
-!- DISRUPTION PHENOTYPE: No visible phenotype under normal growth
condition. {ECO:0000269|PubMed:18947417}.
-!- SIMILARITY: Belongs to the WD repeat G protein beta family.
Ribosomal protein RACK1 subfamily. {ECO:0000305}.
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EMBL; AC073555; AAG60127.1; -; Genomic_DNA.
EMBL; AC074308; AAG50846.1; -; Genomic_DNA.
EMBL; CP002684; AEE32329.1; -; Genomic_DNA.
EMBL; AY059723; AAL24080.1; -; mRNA.
EMBL; AY091352; AAM14291.1; -; mRNA.
EMBL; AY087855; AAM65407.1; -; mRNA.
EMBL; Z26552; CAA81323.1; -; mRNA.
RefSeq; NP_175296.1; NM_103759.5.
UniGene; At.17343; -.
ProteinModelPortal; Q9C4Z6; -.
SMR; Q9C4Z6; -.
BioGrid; 26509; 13.
IntAct; Q9C4Z6; 3.
STRING; 3702.AT1G48630.1; -.
PaxDb; Q9C4Z6; -.
PRIDE; Q9C4Z6; -.
EnsemblPlants; AT1G48630.1; AT1G48630.1; AT1G48630.
GeneID; 841284; -.
Gramene; AT1G48630.1; AT1G48630.1; AT1G48630.
KEGG; ath:AT1G48630; -.
Araport; AT1G48630; -.
TAIR; locus:2008159; AT1G48630.
eggNOG; KOG0279; Eukaryota.
eggNOG; ENOG410XQGZ; LUCA.
HOGENOM; HOG000091643; -.
InParanoid; Q9C4Z6; -.
KO; K14753; -.
OMA; KAQVPYC; -.
OrthoDB; EOG09360EGR; -.
PhylomeDB; Q9C4Z6; -.
PRO; PR:Q9C4Z6; -.
Proteomes; UP000006548; Chromosome 1.
ExpressionAtlas; Q9C4Z6; baseline and differential.
Genevisible; Q9C4Z6; AT.
GO; GO:0005829; C:cytosol; IDA:TAIR.
GO; GO:0022626; C:cytosolic ribosome; IDA:TAIR.
GO; GO:0005634; C:nucleus; IDA:TAIR.
GO; GO:0042788; C:polysomal ribosome; IDA:CAFA.
GO; GO:0005078; F:MAP-kinase scaffold activity; IMP:UniProtKB.
GO; GO:0004871; F:signal transducer activity; IEA:UniProtKB-KW.
GO; GO:0003735; F:structural constituent of ribosome; IDA:CAFA.
GO; GO:0071215; P:cellular response to abscisic acid stimulus; IEP:TAIR.
GO; GO:0009967; P:positive regulation of signal transduction; IMP:UniProtKB.
GO; GO:0006417; P:regulation of translation; IGI:TAIR.
GO; GO:0042255; P:ribosome assembly; IC:CAFA.
GO; GO:0042254; P:ribosome biogenesis; IGI:TAIR.
GO; GO:0048364; P:root development; IGI:TAIR.
GO; GO:0009845; P:seed germination; IGI:TAIR.
GO; GO:0048367; P:shoot system development; IGI:TAIR.
Gene3D; 2.130.10.10; -; 1.
InterPro; IPR020472; G-protein_beta_WD-40_rep.
InterPro; IPR015943; WD40/YVTN_repeat-like_dom.
InterPro; IPR001680; WD40_repeat.
InterPro; IPR019775; WD40_repeat_CS.
InterPro; IPR017986; WD40_repeat_dom.
Pfam; PF00400; WD40; 7.
PRINTS; PR00320; GPROTEINBRPT.
SMART; SM00320; WD40; 7.
SUPFAM; SSF50978; SSF50978; 1.
PROSITE; PS00678; WD_REPEATS_1; 4.
PROSITE; PS50082; WD_REPEATS_2; 7.
PROSITE; PS50294; WD_REPEATS_REGION; 1.
1: Evidence at protein level;
Complete proteome; Reference proteome; Repeat; Ribonucleoprotein;
Ribosomal protein; Transducer; WD repeat.
CHAIN 1 326 Receptor for activated C kinase 1B.
/FTId=PRO_0000403654.
REPEAT 13 53 WD 1.
REPEAT 61 100 WD 2.
REPEAT 103 142 WD 3.
REPEAT 147 188 WD 4.
REPEAT 191 230 WD 5.
REPEAT 232 270 WD 6.
REPEAT 290 326 WD 7.
CONFLICT 315 315 D -> H (in Ref. 4; AAM65407).
{ECO:0000305}.
SEQUENCE 326 AA; 35801 MW; FF2436CDA85F8DA7 CRC64;
MAEGLVLKGT MCAHTDMVTA IATPVDNSDV IVTSSRDKSI ILWKLTKEDK SYGVAQRRMT
GHSHFVQDVV LSSDGQFALS GSWDGELRLW DLATGESTRR FVGHTKDVLS VAFSTDNRQI
VSASRDRTIK LWNTLGECKY TISEADGHKE WVSCVRFSPN TLVPTIVSAS WDKTVKVWNL
QNCKLRNTLA GHSGYLNTVA VSPDGSLCAS GGKDGVILLW DLAEGKKLYS LEAGSIIHSL
CFSPNRYWLC AATENSIRIW DLESKSVVED LKVDLKAEAE KTDGSTGIGN KTKVIYCTSL
NWSADGNTLF SGYTDGVIRV WGIGRY


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