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Regenerating islet-derived protein 3-gamma (REG-3-gamma) (Pancreatitis-associated protein 1B) (PAP-1B) (Pancreatitis-associated protein IB) (PAP IB) (Regenerating islet-derived protein III-gamma) (REG III) (Reg III-gamma) [Cleaved into: Regenerating islet-derived protein 3-gamma 16.5 kDa form; Regenerating islet-derived protein 3-gamma 15 kDa form]

 REG3G_HUMAN             Reviewed;         175 AA.
Q6UW15; A8K980; D6W5J6; Q3SYE4; Q3SYE6; Q6FH18;
05-JUL-2005, integrated into UniProtKB/Swiss-Prot.
05-JUL-2004, sequence version 1.
20-JUN-2018, entry version 114.
RecName: Full=Regenerating islet-derived protein 3-gamma;
Short=REG-3-gamma;
AltName: Full=Pancreatitis-associated protein 1B;
Short=PAP-1B;
AltName: Full=Pancreatitis-associated protein IB;
Short=PAP IB;
AltName: Full=Regenerating islet-derived protein III-gamma;
Short=REG III;
Short=Reg III-gamma;
Contains:
RecName: Full=Regenerating islet-derived protein 3-gamma 16.5 kDa form;
Contains:
RecName: Full=Regenerating islet-derived protein 3-gamma 15 kDa form;
Flags: Precursor;
Name=REG3G; Synonyms=PAP1B; ORFNames=UNQ429/PRO162;
Homo sapiens (Human).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
NCBI_TaxID=9606;
[1]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), AND TISSUE SPECIFICITY.
TISSUE=Pancreas;
PubMed=15556304; DOI=10.1016/j.gene.2004.06.010;
Nata K., Liu Y., Xu L., Ikeda T., Akiyama T., Noguchi N.,
Kawaguchi S., Yamauchi A., Takahashi I., Shervani N.J., Onogawa T.,
Takasawa S., Okamoto H.;
"Molecular cloning, expression and chromosomal localization of a novel
human REG family gene, REG III.";
Gene 340:161-170(2004).
[2]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), AND TISSUE SPECIFICITY.
PubMed=15777617; DOI=10.1016/j.bbaexp.2005.01.011;
Laurine E., Manival X., Montgelard C., Bideau C., Berge-Lefranc J.-L.,
Erard M., Verdier J.-M.;
"PAP IB, a new member of the Reg gene family: cloning, expression,
structural properties, and evolution by gene duplication.";
Biochim. Biophys. Acta 1727:177-187(2005).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
PubMed=12975309; DOI=10.1101/gr.1293003;
Clark H.F., Gurney A.L., Abaya E., Baker K., Baldwin D.T., Brush J.,
Chen J., Chow B., Chui C., Crowley C., Currell B., Deuel B., Dowd P.,
Eaton D., Foster J.S., Grimaldi C., Gu Q., Hass P.E., Heldens S.,
Huang A., Kim H.S., Klimowski L., Jin Y., Johnson S., Lee J.,
Lewis L., Liao D., Mark M.R., Robbie E., Sanchez C., Schoenfeld J.,
Seshagiri S., Simmons L., Singh J., Smith V., Stinson J., Vagts A.,
Vandlen R.L., Watanabe C., Wieand D., Woods K., Xie M.-H.,
Yansura D.G., Yi S., Yu G., Yuan J., Zhang M., Zhang Z., Goddard A.D.,
Wood W.I., Godowski P.J., Gray A.M.;
"The secreted protein discovery initiative (SPDI), a large-scale
effort to identify novel human secreted and transmembrane proteins: a
bioinformatics assessment.";
Genome Res. 13:2265-2270(2003).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
Halleck A., Ebert L., Mkoundinya M., Schick M., Eisenstein S.,
Neubert P., Kstrang K., Schatten R., Shen B., Henze S., Mar W.,
Korn B., Zuo D., Hu Y., LaBaer J.;
"Cloning of human full open reading frames in Gateway(TM) system entry
vector (pDONR201).";
Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases.
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
TISSUE=Testis;
PubMed=14702039; DOI=10.1038/ng1285;
Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R.,
Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H.,
Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.,
Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K.,
Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A.,
Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M.,
Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y.,
Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M.,
Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K.,
Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S.,
Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J.,
Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y.,
Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N.,
Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S.,
Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S.,
Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O.,
Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H.,
Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B.,
Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y.,
Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T.,
Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y.,
Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S.,
Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T.,
Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M.,
Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T.,
Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K.,
Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R.,
Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.;
"Complete sequencing and characterization of 21,243 full-length human
cDNAs.";
Nat. Genet. 36:40-45(2004).
[6]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
PubMed=15815621; DOI=10.1038/nature03466;
Hillier L.W., Graves T.A., Fulton R.S., Fulton L.A., Pepin K.H.,
Minx P., Wagner-McPherson C., Layman D., Wylie K., Sekhon M.,
Becker M.C., Fewell G.A., Delehaunty K.D., Miner T.L., Nash W.E.,
Kremitzki C., Oddy L., Du H., Sun H., Bradshaw-Cordum H., Ali J.,
Carter J., Cordes M., Harris A., Isak A., van Brunt A., Nguyen C.,
Du F., Courtney L., Kalicki J., Ozersky P., Abbott S., Armstrong J.,
Belter E.A., Caruso L., Cedroni M., Cotton M., Davidson T., Desai A.,
Elliott G., Erb T., Fronick C., Gaige T., Haakenson W., Haglund K.,
Holmes A., Harkins R., Kim K., Kruchowski S.S., Strong C.M.,
Grewal N., Goyea E., Hou S., Levy A., Martinka S., Mead K.,
McLellan M.D., Meyer R., Randall-Maher J., Tomlinson C.,
Dauphin-Kohlberg S., Kozlowicz-Reilly A., Shah N.,
Swearengen-Shahid S., Snider J., Strong J.T., Thompson J., Yoakum M.,
Leonard S., Pearman C., Trani L., Radionenko M., Waligorski J.E.,
Wang C., Rock S.M., Tin-Wollam A.-M., Maupin R., Latreille P.,
Wendl M.C., Yang S.-P., Pohl C., Wallis J.W., Spieth J., Bieri T.A.,
Berkowicz N., Nelson J.O., Osborne J., Ding L., Meyer R., Sabo A.,
Shotland Y., Sinha P., Wohldmann P.E., Cook L.L., Hickenbotham M.T.,
Eldred J., Williams D., Jones T.A., She X., Ciccarelli F.D.,
Izaurralde E., Taylor J., Schmutz J., Myers R.M., Cox D.R., Huang X.,
McPherson J.D., Mardis E.R., Clifton S.W., Warren W.C.,
Chinwalla A.T., Eddy S.R., Marra M.A., Ovcharenko I., Furey T.S.,
Miller W., Eichler E.E., Bork P., Suyama M., Torrents D.,
Waterston R.H., Wilson R.K.;
"Generation and annotation of the DNA sequences of human chromosomes 2
and 4.";
Nature 434:724-731(2005).
[7]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L.,
Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R.,
Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V.,
Hannenhalli S., Turner R., Yooseph S., Lu F., Nusskern D.R.,
Shue B.C., Zheng X.H., Zhong F., Delcher A.L., Huson D.H.,
Kravitz S.A., Mouchard L., Reinert K., Remington K.A., Clark A.G.,
Waterman M.S., Eichler E.E., Adams M.D., Hunkapiller M.W., Myers E.W.,
Venter J.C.;
Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases.
[8]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
PubMed=15489334; DOI=10.1101/gr.2596504;
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA
project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[9]
PROTEIN SEQUENCE OF N-TERMINUS, STRUCTURE BY NMR, FUNCTION, AND
PROTEOLYTIC PROCESSING.
PubMed=19095652; DOI=10.1074/jbc.M808077200;
Mukherjee S., Partch C.L., Lehotzky R.E., Whitham C.V., Chu H.,
Bevins C.L., Gardner K.H., Hooper L.V.;
"Regulation of C-type lectin antimicrobial activity by a flexible N-
terminal prosegment.";
J. Biol. Chem. 284:4881-4888(2009).
[10]
PROTEIN SEQUENCE OF 27-41.
PubMed=15340161; DOI=10.1110/ps.04682504;
Zhang Z., Henzel W.J.;
"Signal peptide prediction based on analysis of experimentally
verified cleavage sites.";
Protein Sci. 13:2819-2824(2004).
-!- FUNCTION: Bactericidal C-type lectin which acts exclusively
against Gram-positive bacteria and mediates bacterial killing by
binding to surface-exposed carbohydrate moieties of peptidoglycan.
Restricts bacterial colonization of the intestinal epithelial
surface and consequently limits activation of adaptive immune
responses by the microbiota. The uncleaved form has bacteriostatic
activity, whereas the cleaved form has bactericidal activity
against L.monocytogenes and methicillin-resistant S.aureus.
Regulates keratinocyte proliferation and differentiation after
skin injury. {ECO:0000269|PubMed:19095652}.
-!- SUBCELLULAR LOCATION: Secreted. Cytoplasm {ECO:0000250}.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=2;
Name=1;
IsoId=Q6UW15-1; Sequence=Displayed;
Name=2;
IsoId=Q6UW15-2; Sequence=VSP_045169;
-!- TISSUE SPECIFICITY: Predominantly expressed in pancreas, where it
may be restricted to exocrine pancreas. Moderate expression levels
in testis and weak in heart, kidney and placenta.
{ECO:0000269|PubMed:15556304, ECO:0000269|PubMed:15777617}.
-!- DOMAIN: The EPN motif is essential for recognition of the
peptidoglycan carbohydrate backbone and for efficient bacterial
killing with Glu-114 playing a key role in peptidoglycan binding
and bactericidal activity. {ECO:0000250}.
-!- PTM: Proteolytic processing by trypsin removes an inhibitory N-
terminal propeptide and is essential for peptidoglycan binding and
antibacterial activity. {ECO:0000269|PubMed:19095652}.
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EMBL; AB161037; BAD51394.1; -; mRNA.
EMBL; AB161038; BAD51396.1; -; mRNA.
EMBL; AY428734; AAR88147.1; -; mRNA.
EMBL; AY359047; AAQ89406.1; -; mRNA.
EMBL; CR541938; CAG46736.1; -; mRNA.
EMBL; AB161039; BAD51395.1; -; Genomic_DNA.
EMBL; AK292595; BAF85284.1; -; mRNA.
EMBL; AC017004; AAX88840.1; -; Genomic_DNA.
EMBL; CH471053; EAW99580.1; -; Genomic_DNA.
EMBL; CH471053; EAW99581.1; -; Genomic_DNA.
EMBL; BC103852; AAI03853.1; -; mRNA.
EMBL; BC103853; AAI03854.1; -; mRNA.
EMBL; BC103854; AAI03855.1; -; mRNA.
CCDS; CCDS1962.1; -. [Q6UW15-1]
CCDS; CCDS58714.1; -. [Q6UW15-2]
RefSeq; NP_001008388.1; NM_001008387.2. [Q6UW15-1]
RefSeq; NP_001256969.1; NM_001270040.1. [Q6UW15-2]
RefSeq; NP_940850.1; NM_198448.3. [Q6UW15-1]
RefSeq; XP_005264192.1; XM_005264135.2. [Q6UW15-1]
UniGene; Hs.447084; -.
ProteinModelPortal; Q6UW15; -.
SMR; Q6UW15; -.
STRING; 9606.ENSP00000272324; -.
BioMuta; REG3G; -.
DMDM; 68565895; -.
PaxDb; Q6UW15; -.
PeptideAtlas; Q6UW15; -.
PRIDE; Q6UW15; -.
ProteomicsDB; 67443; -.
Ensembl; ENST00000272324; ENSP00000272324; ENSG00000143954. [Q6UW15-1]
Ensembl; ENST00000393897; ENSP00000377475; ENSG00000143954. [Q6UW15-1]
Ensembl; ENST00000409471; ENSP00000387105; ENSG00000143954. [Q6UW15-2]
GeneID; 130120; -.
KEGG; hsa:130120; -.
UCSC; uc002snw.5; human. [Q6UW15-1]
CTD; 130120; -.
DisGeNET; 130120; -.
EuPathDB; HostDB:ENSG00000143954.12; -.
GeneCards; REG3G; -.
HGNC; HGNC:29595; REG3G.
HPA; HPA047894; -.
HPA; HPA048334; -.
HPA; HPA060705; -.
MIM; 609933; gene.
neXtProt; NX_Q6UW15; -.
OpenTargets; ENSG00000143954; -.
PharmGKB; PA142671087; -.
eggNOG; KOG4297; Eukaryota.
eggNOG; ENOG410XPJ1; LUCA.
GeneTree; ENSGT00700000104249; -.
HOGENOM; HOG000010281; -.
HOVERGEN; HBG004151; -.
InParanoid; Q6UW15; -.
OMA; KDYNCDA; -.
OrthoDB; EOG091G0MDY; -.
PhylomeDB; Q6UW15; -.
Reactome; R-HSA-6803157; Antimicrobial peptides.
GeneWiki; REG3G; -.
GenomeRNAi; 130120; -.
PRO; PR:Q6UW15; -.
Proteomes; UP000005640; Chromosome 2.
Bgee; ENSG00000143954; -.
CleanEx; HS_REG3G; -.
Genevisible; Q6UW15; HS.
GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO; GO:0005576; C:extracellular region; TAS:Reactome.
GO; GO:0070492; F:oligosaccharide binding; IDA:UniProtKB.
GO; GO:0042834; F:peptidoglycan binding; IDA:UniProtKB.
GO; GO:0006953; P:acute-phase response; IEA:UniProtKB-KW.
GO; GO:0061844; P:antimicrobial humoral immune response mediated by antimicrobial peptide; IDA:UniProtKB.
GO; GO:0019730; P:antimicrobial humoral response; TAS:Reactome.
GO; GO:0044278; P:cell wall disruption in other organism; IDA:UniProtKB.
GO; GO:0051715; P:cytolysis in other organism; IDA:UniProtKB.
GO; GO:0050830; P:defense response to Gram-positive bacterium; ISS:UniProtKB.
GO; GO:0002755; P:MyD88-dependent toll-like receptor signaling pathway; ISS:UniProtKB.
GO; GO:0045617; P:negative regulation of keratinocyte differentiation; ISS:UniProtKB.
GO; GO:0010838; P:positive regulation of keratinocyte proliferation; ISS:UniProtKB.
GO; GO:0090303; P:positive regulation of wound healing; ISS:UniProtKB.
Gene3D; 3.10.100.10; -; 1.
InterPro; IPR001304; C-type_lectin-like.
InterPro; IPR016186; C-type_lectin-like/link_sf.
InterPro; IPR018378; C-type_lectin_CS.
InterPro; IPR016187; CTDL_fold.
Pfam; PF00059; Lectin_C; 1.
SMART; SM00034; CLECT; 1.
SUPFAM; SSF56436; SSF56436; 1.
PROSITE; PS00615; C_TYPE_LECTIN_1; 1.
PROSITE; PS50041; C_TYPE_LECTIN_2; 1.
1: Evidence at protein level;
Acute phase; Alternative splicing; Antimicrobial; Complete proteome;
Cytoplasm; Direct protein sequencing; Disulfide bond;
Inflammatory response; Lectin; Reference proteome; Secreted; Signal.
SIGNAL 1 26 {ECO:0000269|PubMed:15340161,
ECO:0000269|PubMed:19095652}.
CHAIN 27 175 Regenerating islet-derived protein 3-
gamma 16.5 kDa form.
/FTId=PRO_0000017434.
PROPEP 27 37 {ECO:0000269|PubMed:19095652}.
/FTId=PRO_0000422751.
CHAIN 38 175 Regenerating islet-derived protein 3-
gamma 15 kDa form.
/FTId=PRO_0000422752.
DOMAIN 47 172 C-type lectin. {ECO:0000255|PROSITE-
ProRule:PRU00040}.
MOTIF 114 116 EPN. {ECO:0000250}.
DISULFID 40 51 {ECO:0000255|PROSITE-ProRule:PRU00040}.
DISULFID 68 171 {ECO:0000255|PROSITE-ProRule:PRU00040}.
DISULFID 146 163 {ECO:0000255|PROSITE-ProRule:PRU00040}.
VAR_SEQ 66 111 Missing (in isoform 2).
{ECO:0000303|PubMed:15489334}.
/FTId=VSP_045169.
CONFLICT 174 174 K -> T (in Ref. 4; CAG46736).
{ECO:0000305}.
SEQUENCE 175 AA; 19330 MW; AF0F5FC59ACB90F5 CRC64;
MLPPMALPSV SWMLLSCLIL LCQVQGEETQ KELPSPRISC PKGSKAYGSP CYALFLSPKS
WMDADLACQK RPSGKLVSVL SGAEGSFVSS LVRSISNSYS YIWIGLHDPT QGSEPDGDGW
EWSSTDVMNY FAWEKNPSTI LNPGHCGSLS RSTGFLKWKD YNCDAKLPYV CKFKD


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