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Ribonuclease J (RNase J) (EC 3.1.-.-)

 E0PCZ7_STREI            Unreviewed;       553 AA.
E0PCZ7;
02-NOV-2010, integrated into UniProtKB/TrEMBL.
02-NOV-2010, sequence version 1.
07-NOV-2018, entry version 33.
RecName: Full=Ribonuclease J {ECO:0000256|HAMAP-Rule:MF_01491};
Short=RNase J {ECO:0000256|HAMAP-Rule:MF_01491};
EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01491};
Name=rnj {ECO:0000256|HAMAP-Rule:MF_01491};
ORFNames=HMPREF9319_0720 {ECO:0000313|EMBL:EFM27750.1};
Streptococcus equinus ATCC 700338.
Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae;
Streptococcus.
NCBI_TaxID=864569 {ECO:0000313|EMBL:EFM27750.1, ECO:0000313|Proteomes:UP000004290};
[1] {ECO:0000313|EMBL:EFM27750.1, ECO:0000313|Proteomes:UP000004290}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=ATCC 700338 {ECO:0000313|EMBL:EFM27750.1,
ECO:0000313|Proteomes:UP000004290};
Muzny D., Qin X., Deng J., Jiang H., Liu Y., Qu J., Song X.-Z.,
Zhang L., Thornton R., Coyle M., Francisco L., Jackson L., Javaid M.,
Korchina V., Kovar C., Mata R., Mathew T., Ngo R., Nguyen L.,
Nguyen N., Okwuonu G., Ongeri F., Pham C., Simmons D.,
Wilczek-Boney K., Hale W., Jakkamsetti A., Pham P., Ruth R.,
San Lucas F., Warren J., Zhang J., Zhao Z., Zhou C., Zhu D., Lee S.,
Bess C., Blankenburg K., Forbes L., Fu Q., Gubbala S., Hirani K.,
Jayaseelan J.C., Lara F., Munidasa M., Palculict T., Patil S.,
Pu L.-L., Saada N., Tang L., Weissenberger G., Zhu Y., Hemphill L.,
Shang Y., Youmans B., Ayvaz T., Ross M., Santibanez J., Aqrawi P.,
Gross S., Joshi V., Fowler G., Nazareth L., Reid J., Worley K.,
Petrosino J., Highlander S., Gibbs R.;
Submitted (JUL-2010) to the EMBL/GenBank/DDBJ databases.
-!- FUNCTION: An RNase that has 5'-3' exonuclease and possibly
endonuclease activity. Involved in maturation of rRNA and in some
organisms also mRNA maturation and/or decay. {ECO:0000256|HAMAP-
Rule:MF_01491}.
-!- SUBUNIT: Homodimer, may be a subunit of the RNA degradosome.
{ECO:0000256|HAMAP-Rule:MF_01491}.
-!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_01491}.
-!- SIMILARITY: Belongs to the metallo-beta-lactamase superfamily.
RNA-metabolizing metallo-beta-lactamase-like family. Bacterial
RNase J subfamily. {ECO:0000256|HAMAP-Rule:MF_01491}.
-!- CAUTION: Lacks conserved residue(s) required for the propagation
of feature annotation. {ECO:0000256|HAMAP-Rule:MF_01491}.
-!- CAUTION: The sequence shown here is derived from an
EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is
preliminary data. {ECO:0000313|EMBL:EFM27750.1}.
-----------------------------------------------------------------------
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EMBL; AEEL01000012; EFM27750.1; -; Genomic_DNA.
RefSeq; WP_003064302.1; NZ_GL397128.1.
EnsemblBacteria; EFM27750; EFM27750; HMPREF9319_0720.
Proteomes; UP000004290; Unassembled WGS sequence.
GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
GO; GO:0004534; F:5'-3' exoribonuclease activity; IEA:UniProtKB-UniRule.
GO; GO:0004521; F:endoribonuclease activity; IEA:UniProtKB-UniRule.
GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
GO; GO:0006364; P:rRNA processing; IEA:UniProtKB-UniRule.
Gene3D; 3.60.15.10; -; 1.
HAMAP; MF_01491; RNase_J_bact; 1.
InterPro; IPR001279; Metallo-B-lactamas.
InterPro; IPR036866; RibonucZ/Hydroxyglut_hydro.
InterPro; IPR011108; RMMBL.
InterPro; IPR004613; RNase_J.
InterPro; IPR030854; RNase_J_bac.
Pfam; PF00753; Lactamase_B; 1.
Pfam; PF07521; RMMBL; 1.
SMART; SM00849; Lactamase_B; 1.
SUPFAM; SSF56281; SSF56281; 1.
TIGRFAMs; TIGR00649; MG423; 1.
3: Inferred from homology;
Complete proteome {ECO:0000313|Proteomes:UP000004290};
Cytoplasm {ECO:0000256|HAMAP-Rule:MF_01491};
Endonuclease {ECO:0000256|HAMAP-Rule:MF_01491};
Exonuclease {ECO:0000256|HAMAP-Rule:MF_01491};
Hydrolase {ECO:0000256|HAMAP-Rule:MF_01491};
Nuclease {ECO:0000256|HAMAP-Rule:MF_01491};
RNA-binding {ECO:0000256|HAMAP-Rule:MF_01491};
rRNA processing {ECO:0000256|HAMAP-Rule:MF_01491}.
DOMAIN 16 212 Lactamase_B. {ECO:0000259|SMART:SM00849}.
SEQUENCE 553 AA; 61531 MW; 3A5FCBE00E4B1398 CRC64;
MSDIKIIALG GVRENAKNLY VVEVNDSIFI LDAGLKYPEN EQLGVDEVIP NIDYLVENKK
RVQGIFLTHG HADAIGALPY ILSEFKAPVF GSPLTIELAK LFVKKNNNVK KFNNFHVIDA
ETEIEFADAT ISFFKSTHSV PESLGIVVGT DEGNIVYTGD FKFDQAARKY YRTDLSRLTE
IGREGVLALL SDSANATSNV LTASESEVAA EMDSIIADAE GRVIIAAVAS NLIRIQQVFD
SAADYGRRVV LTGFDAENIV RTAIRMKRLR LVDEKLIVKP KDMHKFEDHE LIILETGRMG
EPINGLQKMA LGRHRYVQIK EGDLVYIVTT PSLSKEAAVA RVENLIYKAG GVVKLITQTM
NVSGHANARD LQLMINLLHP KYLFPVQGEY RNLATHAELA QEVGMYPENI YIVKRGDVMV
LDKDGFNHEG SVPAGDVMID GNAIGDVGNI VLRDRKVLSE DGIFIVALTV NKREKKIVSK
AKIHTRGFVY VKKSRDILRE SAELVNQTVE NYLAQDSFDW GELKGAVRDE VAKFLFDQTK
RRPAILPVVM EVR


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