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Ribonucleoside-diphosphate reductase large subunit (R1) (EC 1.17.4.1) (Ribonucleotide reductase large subunit)

 T2FK93_9ALPH            Unreviewed;       788 AA.
T2FK93;
13-NOV-2013, integrated into UniProtKB/TrEMBL.
13-NOV-2013, sequence version 1.
27-SEP-2017, entry version 25.
RecName: Full=Ribonucleoside-diphosphate reductase large subunit {ECO:0000256|HAMAP-Rule:MF_04026};
Short=R1 {ECO:0000256|HAMAP-Rule:MF_04026};
EC=1.17.4.1 {ECO:0000256|HAMAP-Rule:MF_04026};
AltName: Full=Ribonucleotide reductase large subunit {ECO:0000256|HAMAP-Rule:MF_04026};
Name=UL39 {ECO:0000313|EMBL:AGW01114.1};
Synonyms=RIR1 {ECO:0000256|HAMAP-Rule:MF_04026},
RR1 {ECO:0000313|EMBL:AHW49066.1};
Suid alphaherpesvirus 1 (Pseudorabies virus).
Viruses; dsDNA viruses, no RNA stage; Herpesvirales; Herpesviridae;
Alphaherpesvirinae; Varicellovirus.
NCBI_TaxID=10345 {ECO:0000313|EMBL:AGW01114.1, ECO:0000313|Proteomes:UP000166532};
[1] {ECO:0000313|EMBL:AGW01114.1, ECO:0000313|Proteomes:UP000166532}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=BJ/YT {ECO:0000313|EMBL:AGW01114.1};
Zhong C., Lyu Y.L., Liu L., Zhang L.T., Lu Z.J., Wang J.S.;
Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases.
[2] {ECO:0000313|EMBL:AIT55764.1, ECO:0000313|Proteomes:UP000142350}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=TJ {ECO:0000313|EMBL:AIT55764.1};
PubMed=25293398; DOI=10.1016/j.vetmic.2014.09.003;
Luo Y., Li N., Cong X., Wang C.H., Du M., Li L., Zhao B., Yuan J.,
Liu D.D., Li S., Li Y., Sun Y., Qiu H.J.;
"Pathogenicity and genomic characterization of a pseudorabies virus
variant isolated from Bartha-K61-vaccinated swine population in
China.";
Vet. Microbiol. 174:107-115(2014).
[3] {ECO:0000313|EMBL:AHW49066.1}
NUCLEOTIDE SEQUENCE.
STRAIN=HNQZ-China-2012 {ECO:0000313|EMBL:AHW49066.1};
Hu H., Yu T., Cheng S., Liu C., Deng F., Guo N., He Q.;
"Genetic properties of endemic Chinese pseudorabies virus strains
isolated since 2012.";
Submitted (FEB-2014) to the EMBL/GenBank/DDBJ databases.
[4] {ECO:0000313|EMBL:AKG93990.1}
NUCLEOTIDE SEQUENCE.
STRAIN=HNX {ECO:0000313|EMBL:AKG93990.1};
Zhang J.E., Yang H., Guo J., Deng Z., Luo H., Luo M., Zhao B.;
Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases.
[5] {ECO:0000313|EMBL:AKP23880.1}
NUCLEOTIDE SEQUENCE.
STRAIN=JS-2012 {ECO:0000313|EMBL:AKP23880.1};
Zhang Q., Liu F., Zheng H., Tong W., Liang C., Tong G.;
Submitted (DEC-2014) to the EMBL/GenBank/DDBJ databases.
[6] {ECO:0000313|EMBL:AKG93990.1, ECO:0000313|Proteomes:UP000144334}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=HNX {ECO:0000313|EMBL:AKG93990.1};
PubMed=26370151; DOI=10.1021/acsami.5b06876;
Ye S., Shao K., Li Z., Guo N., Zuo Y., Li Q., Lu Z., Chen L., He Q.,
Han H.;
"Antiviral Activity of Graphene Oxide: How Sharp Edged Structure and
Charge Matter.";
ACS Appl Mater Interfaces 7:21571-21579(2015).
[7] {ECO:0000313|EMBL:AJW72258.1, ECO:0000313|Proteomes:UP000102606, ECO:0000313|Proteomes:UP000113972}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=HeN1 {ECO:0000313|EMBL:AJW72258.1}, and
JS-2012 {ECO:0000313|EMBL:AKP23880.1};
PubMed=25965793; DOI=10.1016/j.virol.2015.04.013;
Ye C., Zhang Q.Z., Tian Z.J., Zheng H., Zhao K., Liu F., Guo J.C.,
Tong W., Jiang C.G., Wang S.J., Shi M., Chang X.B., Jiang Y.F.,
Peng J.M., Zhou Y.J., Tang Y.D., Sun M.X., Cai X.H., An T.Q.,
Tong G.Z.;
"Genomic characterization of emergent pseudorabies virus in China
reveals marked sequence divergence: Evidence for the existence of two
major genotypes.";
Virology 483:32-43(2015).
[8] {ECO:0000313|EMBL:ALT14245.1}
NUCLEOTIDE SEQUENCE.
STRAIN=HN1201 {ECO:0000313|EMBL:ALT14245.1};
Xiang T., Song Y., Huang L., Wang B., Wu P.;
Submitted (JAN-2015) to the EMBL/GenBank/DDBJ databases.
[9] {ECO:0000313|EMBL:ANR01139.1}
NUCLEOTIDE SEQUENCE.
STRAIN=HB1201 {ECO:0000313|EMBL:ANR01139.1};
Ge X., Li M., Zhou L., Guo X., Yang H.;
"The recently emergent PRV strain isolated from a Bartha-K61-
vaccinated piglet in China.";
Submitted (NOV-2015) to the EMBL/GenBank/DDBJ databases.
[10] {ECO:0000313|EMBL:AKG94121.1, ECO:0000313|Proteomes:UP000150587}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=HNB {ECO:0000313|EMBL:AKG94121.1};
PubMed=26823587;
Yu T., Chen F., Ku X., Zhu Y., Ma H., Li S., He Q.;
"Complete Genome Sequence of Novel Pseudorabies Virus Strain HNB
Isolated in China.";
Genome Announc. 4:e01641-15(2016).
[11] {ECO:0000313|EMBL:ALT14245.1, ECO:0000313|Proteomes:UP000154438}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=HN1201 {ECO:0000313|EMBL:ALT14245.1};
PubMed=26988055;
Xiang S., Zhou Z., Hu X., Li Y., Zhang C., Wang J., Li X., Tan F.,
Tian K.;
"Complete Genome Sequence of a Variant Pseudorabies Virus Strain
Isolated in Central China.";
Genome Announc. 4:0-0(2016).
[12] {ECO:0000313|EMBL:AML81205.1, ECO:0000313|Proteomes:UP000104419}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=HLJ8 {ECO:0000313|EMBL:AML81205.1};
PubMed=26874017; DOI=10.1016/j.virol.2016.01.016;
Ye C., Guo J.C., Gao J.C., Wang T.Y., Zhao K., Chang X.B., Wang Q.,
Peng J.M., Tian Z.J., Cai X.H., Tong G.Z., An T.Q.;
"Genomic analyses reveal that partial sequence of an earlier
pseudorabies virus in China is originated from a Bartha-vaccine-like
strain.";
Virology 491:56-63(2016).
[13] {ECO:0000313|EMBL:AKG94056.1, ECO:0000313|Proteomes:UP000128799}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Fa {ECO:0000313|EMBL:AKG94056.1};
PubMed=27012685; DOI=10.1007/s11262-016-1324-z;
Yu T., Chen F., Ku X., Fan J., Zhu Y., Ma H., Li S., Wu B., He Q.;
"Growth characteristics and complete genomic sequence analysis of a
novel pseudorabies virus in China.";
Virus Genes 52:474-483(2016).
[14] {ECO:0000313|EMBL:ARJ55456.1}
NUCLEOTIDE SEQUENCE.
STRAIN=Ea {ECO:0000313|EMBL:ARJ55456.1};
PubMed=28363130; DOI=.1016/j.virol.2017.03.013;
Wang X., Wu C.X., Song X.R., Chen H.C., Liu Z.F.;
"Comparison of pseudorabies virus China reference strain with emerging
variants reveals independent virus evolution within specific
geographic regions.";
Virology 506:92-98(2017).
-!- FUNCTION: Provides the precursors necessary for DNA synthesis.
Catalyzes the biosynthesis of deoxyribonucleotides from the
corresponding ribonucleotides. {ECO:0000256|RuleBase:RU003410}.
-!- FUNCTION: Ribonucleoside-diphosphate reductase holoenzyme provides
the precursors necessary for viral DNA synthesis. Allows virus
growth in non-dividing cells, as well as reactivation from latency
in infected hosts. Catalyzes the biosynthesis of
deoxyribonucleotides from the corresponding ribonucleotides.
{ECO:0000256|HAMAP-Rule:MF_04026}.
-!- CATALYTIC ACTIVITY: 2'-deoxyribonucleoside diphosphate +
thioredoxin disulfide + H(2)O = ribonucleoside diphosphate +
thioredoxin. {ECO:0000256|HAMAP-Rule:MF_04026,
ECO:0000256|RuleBase:RU003410}.
-!- PATHWAY: Genetic information processing; DNA replication.
{ECO:0000256|HAMAP-Rule:MF_04026, ECO:0000256|RuleBase:RU003410}.
-!- SUBUNIT: Heterotetramer composed of a homodimer of the large
subunit (R1) and a homodimer of the small subunit (R2). Larger
multisubunit protein complex are also active, composed of
(R1)n(R2)n. {ECO:0000256|HAMAP-Rule:MF_04026}.
-!- SIMILARITY: Belongs to the ribonucleoside diphosphate reductase
large chain family. {ECO:0000256|HAMAP-Rule:MF_04026,
ECO:0000256|RuleBase:RU003410}.
-!- CAUTION: Lacks conserved residue(s) required for the propagation
of feature annotation. {ECO:0000256|HAMAP-Rule:MF_04026}.
-----------------------------------------------------------------------
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EMBL; KC981239; AGW01114.1; -; Genomic_DNA.
EMBL; KJ526461; AHW49066.1; -; Genomic_DNA.
EMBL; KJ789182; AIT55764.1; -; Genomic_DNA.
EMBL; KP098534; AJW72258.1; -; Genomic_DNA.
EMBL; KM189912; AKG93990.1; -; Genomic_DNA.
EMBL; KM189913; AKG94056.1; -; Genomic_DNA.
EMBL; KM189914; AKG94121.1; -; Genomic_DNA.
EMBL; KP257591; AKP23880.1; -; Genomic_DNA.
EMBL; KP722022; ALT14245.1; -; Genomic_DNA.
EMBL; KT824771; AML81205.1; -; Genomic_DNA.
EMBL; KU057086; ANR01139.1; -; Genomic_DNA.
EMBL; KX423960; ARJ55456.1; -; Genomic_DNA.
UniPathway; UPA00326; -.
Proteomes; UP000102606; Genome.
Proteomes; UP000104419; Genome.
Proteomes; UP000113972; Genome.
Proteomes; UP000128799; Genome.
Proteomes; UP000142350; Genome.
Proteomes; UP000144334; Genome.
Proteomes; UP000150587; Genome.
Proteomes; UP000154438; Genome.
Proteomes; UP000166532; Genome.
GO; GO:0005524; F:ATP binding; IEA:UniProtKB-UniRule.
GO; GO:0004748; F:ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor; IEA:UniProtKB-UniRule.
GO; GO:0006260; P:DNA replication; IEA:UniProtKB-UniRule.
GO; GO:0016032; P:viral process; IEA:UniProtKB-UniRule.
HAMAP; MF_04026; HSV_RIR1; 1.
InterPro; IPR034717; HSV_RIR1.
InterPro; IPR013346; NrdE_NrdA.
InterPro; IPR000788; RNR_lg_C.
InterPro; IPR013509; RNR_lsu_N.
Pfam; PF02867; Ribonuc_red_lgC; 1.
Pfam; PF00317; Ribonuc_red_lgN; 1.
PRINTS; PR01183; RIBORDTASEM1.
TIGRFAMs; TIGR02506; NrdE_NrdA; 1.
PROSITE; PS00089; RIBORED_LARGE; 1.
3: Inferred from homology;
ATP-binding {ECO:0000256|HAMAP-Rule:MF_04026};
Complete proteome {ECO:0000313|Proteomes:UP000102606,
ECO:0000313|Proteomes:UP000104419, ECO:0000313|Proteomes:UP000113972,
ECO:0000313|Proteomes:UP000128799};
Disulfide bond {ECO:0000256|HAMAP-Rule:MF_04026};
DNA replication {ECO:0000256|HAMAP-Rule:MF_04026,
ECO:0000256|RuleBase:RU003410};
Early protein {ECO:0000256|HAMAP-Rule:MF_04026};
Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_04026};
Oxidoreductase {ECO:0000256|HAMAP-Rule:MF_04026,
ECO:0000256|RuleBase:RU003410}.
DOMAIN 597 619 RIBORED_LARGE.
{ECO:0000259|PROSITE:PS00089}.
REGION 230 231 Substrate binding. {ECO:0000256|HAMAP-
Rule:MF_04026}.
REGION 442 446 Substrate binding. {ECO:0000256|HAMAP-
Rule:MF_04026}.
REGION 619 623 Substrate binding. {ECO:0000256|HAMAP-
Rule:MF_04026}.
ACT_SITE 442 442 Proton acceptor. {ECO:0000256|HAMAP-
Rule:MF_04026}.
ACT_SITE 444 444 Cysteine radical intermediate.
{ECO:0000256|HAMAP-Rule:MF_04026}.
ACT_SITE 446 446 Proton acceptor. {ECO:0000256|HAMAP-
Rule:MF_04026}.
BINDING 215 215 Substrate. {ECO:0000256|HAMAP-
Rule:MF_04026}.
BINDING 261 261 Substrate; via amide nitrogen.
{ECO:0000256|HAMAP-Rule:MF_04026}.
SITE 231 231 Important for hydrogen atom transfer.
{ECO:0000256|HAMAP-Rule:MF_04026}.
SITE 459 459 Important for hydrogen atom transfer.
{ECO:0000256|HAMAP-Rule:MF_04026}.
SITE 763 763 Important for electron transfer.
{ECO:0000256|HAMAP-Rule:MF_04026}.
SITE 764 764 Important for electron transfer.
{ECO:0000256|HAMAP-Rule:MF_04026}.
SITE 783 783 Interacts with thioredoxin/glutaredoxin.
{ECO:0000256|HAMAP-Rule:MF_04026}.
SITE 786 786 Interacts with thioredoxin/glutaredoxin.
{ECO:0000256|HAMAP-Rule:MF_04026}.
SEQUENCE 788 AA; 86386 MW; 4BBD1B3D9D21EE22 CRC64;
MASPVVPAAA AAAPGADSFL DAVCPEDVAR ALAAELEALR ALGHDVGAPA PGASRREVAL
FVTRAVDGLK AFSRVDERVY VACGKLVHLR VRSREADLDA WLASPELALI PAVAGAVRRH
RARVEAALRW FWREAYPALY ARGLQSALKY EEMYLARLEH GRCEAMDQFF VRLAAAAATA
TRRAMALVLC GSDAWPEVFD AYFRALATQA IVPATPLMLF AGRARGSLAS CYLLNPLPRT
TEEAVRAITD EVAPILLRRG GVGLSLQSFN RTPSGDCTRG IMAVLKALDS MTAAINSDSE
RPTGVCVYVE PWHADVRAVL NMRGMLAADE SLRCDNIFSC LWTPDLFFQR YQRHLDGERA
VKWTLFDDRA SHLTSLHGPD FAREYERLER AGLGVESLPI QDMAFLIVRS AVMTGSPFLM
MKDACNRHFH TDTRGAALAT SNLCTEIVQR ATPGENGVCN LASVNLPACL AGGAFDFAAL
RRAARVAAVF VNAMMRIGNY PTEASVEGVR RSRSLGIGLQ GLHTTVLALD MDMADPAARR
LNAAIAEELL YGVMDASVEL CERGLRPFDG FEHSRYARGV MPFDAYERVS LREPMRWDAL
RVRIAEHGVY NAQFVALMPT VSSSQVTESS EGFSPTFTNM FSKVTISGEL LRPNLPLMET
LRRLFPRECA RRDAVARLER AQWSVAAAFG ELPAGHPLAK FKTAFEYDQE LLIDMCADRA
PFVDHSQSMS LFLTEPADGK LHASRVMGLL MRAYNLGLKT GMYYCKIRKA TNNGVFTGGD
LVCTSCHL


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