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Ribonucleoside-diphosphate reductase small subunit (EC 1.17.4.1) (Ribonucleotide reductase small subunit)

 G3G8Y4_9ALPH            Unreviewed;       303 AA.
G3G8Y4;
16-NOV-2011, integrated into UniProtKB/TrEMBL.
16-NOV-2011, sequence version 1.
27-SEP-2017, entry version 35.
RecName: Full=Ribonucleoside-diphosphate reductase small subunit {ECO:0000256|HAMAP-Rule:MF_04028};
EC=1.17.4.1 {ECO:0000256|HAMAP-Rule:MF_04028};
AltName: Full=Ribonucleotide reductase small subunit {ECO:0000256|HAMAP-Rule:MF_04028};
Name=UL40 {ECO:0000313|EMBL:AEM64017.1};
Synonyms=RIR2 {ECO:0000256|HAMAP-Rule:MF_04028},
RR2 {ECO:0000313|EMBL:AHW49073.1};
Suid alphaherpesvirus 1 (Pseudorabies virus).
Viruses; dsDNA viruses, no RNA stage; Herpesvirales; Herpesviridae;
Alphaherpesvirinae; Varicellovirus.
NCBI_TaxID=10345 {ECO:0000313|EMBL:AEM64017.1, ECO:0000313|Proteomes:UP000128830};
[1] {ECO:0000313|EMBL:AEM64017.1, ECO:0000313|Proteomes:UP000128830}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Kaplan {ECO:0000313|EMBL:AEM64017.1};
PubMed=22022263; DOI=10.1371/journal.ppat.1002282;
Szpara M.L., Tafuri Y.R., Parsons L., Shamim S.R., Verstrepen K.J.,
Legendre M., Enquist L.W.;
"A wide extent of inter-strain diversity in virulent and vaccine
strains of alphaherpesviruses.";
PLoS Pathog. 7:E1002282-E1002282(2011).
[2] {ECO:0000313|Proteomes:UP000113935, ECO:0000313|Proteomes:UP000158331, ECO:0000313|Proteomes:UP000181035}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=DUL34gfp {ECO:0000313|EMBL:AFI70874.1},
DUL34Pass {ECO:0000313|EMBL:AFI70943.1}, and
Kaplan {ECO:0000313|EMBL:AFI70805.1};
PubMed=22491460; DOI=10.1128/JVI.00068-12;
Grimm K.S., Klupp B.G., Granzow H., Muller F.M., Fuchs W.,
Mettenleiter T.C.;
"Analysis of viral and cellular factors influencing herpesvirus-
induced nuclear envelope breakdown.";
J. Virol. 86:6512-6521(2012).
[3] {ECO:0000313|EMBL:AGW01115.1, ECO:0000313|Proteomes:UP000166532}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=BJ/YT {ECO:0000313|EMBL:AGW01115.1};
Zhong C., Lyu Y.L., Liu L., Zhang L.T., Lu Z.J., Wang J.S.;
Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases.
[4] {ECO:0000313|EMBL:AID18741.1, ECO:0000313|Proteomes:UP000181576}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Kaplan {ECO:0000313|EMBL:AID18741.1};
PubMed=25035325;
Tombacz D., Sharon D., Olah P., Csabai Z., Snyder M., Boldogkoi Z.;
"Strain Kaplan of Pseudorabies Virus Genome Sequenced by PacBio
Single-Molecule Real-Time Sequencing Technology.";
Genome Announc. 2:e00628-14(2014).
[5] {ECO:0000313|EMBL:AIT55765.1, ECO:0000313|Proteomes:UP000142350}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=TJ {ECO:0000313|EMBL:AIT55765.1};
PubMed=25293398; DOI=10.1016/j.vetmic.2014.09.003;
Luo Y., Li N., Cong X., Wang C.H., Du M., Li L., Zhao B., Yuan J.,
Liu D.D., Li S., Li Y., Sun Y., Qiu H.J.;
"Pathogenicity and genomic characterization of a pseudorabies virus
variant isolated from Bartha-K61-vaccinated swine population in
China.";
Vet. Microbiol. 174:107-115(2014).
[6] {ECO:0000313|EMBL:AHW49073.1}
NUCLEOTIDE SEQUENCE.
STRAIN=HBHD-China-2012 {ECO:0000313|EMBL:AHW49073.1},
HNQX-China-2012 {ECO:0000313|EMBL:AHW49074.1}, and
SDWF1-China-2012 {ECO:0000313|EMBL:AHW49077.1};
Hu H., Yu T., Cheng S., Liu C., Deng F., Guo N., He Q.;
"Genetic properties of endemic Chinese pseudorabies virus strains
isolated since 2012.";
Submitted (FEB-2014) to the EMBL/GenBank/DDBJ databases.
[7] {ECO:0000313|EMBL:AJD79508.1, ECO:0000313|Proteomes:UP000119561}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=ZJ01 {ECO:0000313|EMBL:AJD79508.1};
Gu Z., Dong J., Sun H., Yang W., Hou C., Bai J., Jiang P.;
"Comparetive analysis of the highly pathogenic variant of pseudorabies
virus strain ZJ01.";
Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases.
[8] {ECO:0000313|EMBL:AKG93991.1}
NUCLEOTIDE SEQUENCE.
STRAIN=HNX {ECO:0000313|EMBL:AKG93991.1};
Zhang J.E., Yang H., Guo J., Deng Z., Luo H., Luo M., Zhao B.;
Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases.
[9] {ECO:0000313|EMBL:AKG93991.1, ECO:0000313|Proteomes:UP000144334}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=HNX {ECO:0000313|EMBL:AKG93991.1};
PubMed=26370151; DOI=10.1021/acsami.5b06876;
Ye S., Shao K., Li Z., Guo N., Zuo Y., Li Q., Lu Z., Chen L., He Q.,
Han H.;
"Antiviral Activity of Graphene Oxide: How Sharp Edged Structure and
Charge Matter.";
ACS Appl Mater Interfaces 7:21571-21579(2015).
[10] {ECO:0000313|EMBL:AJW72260.1, ECO:0000313|Proteomes:UP000113972}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=HeN1 {ECO:0000313|EMBL:AJW72260.1};
PubMed=25965793; DOI=10.1016/j.virol.2015.04.013;
Ye C., Zhang Q.Z., Tian Z.J., Zheng H., Zhao K., Liu F., Guo J.C.,
Tong W., Jiang C.G., Wang S.J., Shi M., Chang X.B., Jiang Y.F.,
Peng J.M., Zhou Y.J., Tang Y.D., Sun M.X., Cai X.H., An T.Q.,
Tong G.Z.;
"Genomic characterization of emergent pseudorabies virus in China
reveals marked sequence divergence: Evidence for the existence of two
major genotypes.";
Virology 483:32-43(2015).
[11] {ECO:0000313|EMBL:ALT14246.1}
NUCLEOTIDE SEQUENCE.
STRAIN=HN1201 {ECO:0000313|EMBL:ALT14246.1};
Xiang T., Song Y., Huang L., Wang B., Wu P.;
Submitted (JAN-2015) to the EMBL/GenBank/DDBJ databases.
[12] {ECO:0000313|EMBL:ANR01140.1}
NUCLEOTIDE SEQUENCE.
STRAIN=HB1201 {ECO:0000313|EMBL:ANR01140.1};
Ge X., Li M., Zhou L., Guo X., Yang H.;
"The recently emergent PRV strain isolated from a Bartha-K61-
vaccinated piglet in China.";
Submitted (NOV-2015) to the EMBL/GenBank/DDBJ databases.
[13] {ECO:0000313|EMBL:AMO42744.1, ECO:0000313|Proteomes:UP000157067}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=DL14/08 {ECO:0000313|EMBL:AMO42744.1};
Liu H., Hu B., Li X.-T., Zhang L., Xue X.-H., Lv S., Lu R.-G., Shi N.,
Zhang H.-L., Zhao J.-J., Bai X., Yan X.-J.;
"Mink Infection with Highly Pathogenic Pseudorabies Virus, Northern
China, 2014.";
Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases.
[14] {ECO:0000313|EMBL:ANZ03054.1}
NUCLEOTIDE SEQUENCE.
STRAIN=Ea {ECO:0000313|EMBL:ANZ03054.1};
Shamseldin A., Moawad H., Abd El-Rahim W.M., Sadowsky M.J.;
Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases.
[15] {ECO:0000313|EMBL:AKG94123.1, ECO:0000313|Proteomes:UP000150587}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=HNB {ECO:0000313|EMBL:AKG94123.1};
PubMed=26823587;
Yu T., Chen F., Ku X., Zhu Y., Ma H., Li S., He Q.;
"Complete Genome Sequence of Novel Pseudorabies Virus Strain HNB
Isolated in China.";
Genome Announc. 4:e01641-15(2016).
[16] {ECO:0000313|EMBL:ALT14246.1, ECO:0000313|Proteomes:UP000154438}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=HN1201 {ECO:0000313|EMBL:ALT14246.1};
PubMed=26988055;
Xiang S., Zhou Z., Hu X., Li Y., Zhang C., Wang J., Li X., Tan F.,
Tian K.;
"Complete Genome Sequence of a Variant Pseudorabies Virus Strain
Isolated in Central China.";
Genome Announc. 4:0-0(2016).
[17] {ECO:0000313|EMBL:AML81206.1, ECO:0000313|Proteomes:UP000104419}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=HLJ8 {ECO:0000313|EMBL:AML81206.1};
PubMed=26874017; DOI=10.1016/j.virol.2016.01.016;
Ye C., Guo J.C., Gao J.C., Wang T.Y., Zhao K., Chang X.B., Wang Q.,
Peng J.M., Tian Z.J., Cai X.H., Tong G.Z., An T.Q.;
"Genomic analyses reveal that partial sequence of an earlier
pseudorabies virus in China is originated from a Bartha-vaccine-like
strain.";
Virology 491:56-63(2016).
[18] {ECO:0000313|EMBL:AKG94057.1, ECO:0000313|Proteomes:UP000128799}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Fa {ECO:0000313|EMBL:AKG94057.1};
PubMed=27012685; DOI=10.1007/s11262-016-1324-z;
Yu T., Chen F., Ku X., Fan J., Zhu Y., Ma H., Li S., Wu B., He Q.;
"Growth characteristics and complete genomic sequence analysis of a
novel pseudorabies virus in China.";
Virus Genes 52:474-483(2016).
[19] {ECO:0000313|EMBL:APT68441.1}
NUCLEOTIDE SEQUENCE.
STRAIN=LA {ECO:0000313|EMBL:APT68441.1};
Oliw E.H.;
Submitted (JAN-2016) to the EMBL/GenBank/DDBJ databases.
[20] {ECO:0000313|EMBL:ARJ55455.1}
NUCLEOTIDE SEQUENCE.
STRAIN=Ea {ECO:0000313|EMBL:ARJ55455.1};
PubMed=28363130; DOI=.1016/j.virol.2017.03.013;
Wang X., Wu C.X., Song X.R., Chen H.C., Liu Z.F.;
"Comparison of pseudorabies virus China reference strain with emerging
variants reveals independent virus evolution within specific
geographic regions.";
Virology 506:92-98(2017).
-!- FUNCTION: Ribonucleoside-diphosphate reductase holoenzyme provides
the precursors necessary for viral DNA synthesis. Allows virus
growth in non-dividing cells, as well as reactivation from latency
in infected hosts. Catalyzes the biosynthesis of
deoxyribonucleotides from the corresponding ribonucleotides.
{ECO:0000256|HAMAP-Rule:MF_04028}.
-!- CATALYTIC ACTIVITY: 2'-deoxyribonucleoside diphosphate +
thioredoxin disulfide + H(2)O = ribonucleoside diphosphate +
thioredoxin. {ECO:0000256|HAMAP-Rule:MF_04028}.
-!- COFACTOR:
Name=Fe cation; Xref=ChEBI:CHEBI:24875;
Evidence={ECO:0000256|HAMAP-Rule:MF_04028};
-!- PATHWAY: Genetic information processing; DNA replication.
{ECO:0000256|HAMAP-Rule:MF_04028}.
-!- SUBUNIT: Heterotetramer composed of a homodimer of the large
subunit (R1) and a homodimer of the small subunit (R2). Larger
multisubunit protein complex are also active, composed of
(R1)n(R2)n. {ECO:0000256|HAMAP-Rule:MF_04028}.
-!- SIMILARITY: Belongs to the ribonucleoside diphosphate reductase
small chain family. {ECO:0000256|HAMAP-Rule:MF_04028}.
-----------------------------------------------------------------------
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms
Distributed under the Creative Commons Attribution-NoDerivs License
-----------------------------------------------------------------------
EMBL; JF797218; AEM64017.1; -; Genomic_DNA.
EMBL; JQ809328; AFI70805.1; -; Genomic_DNA.
EMBL; JQ809329; AFI70874.1; -; Genomic_DNA.
EMBL; JQ809330; AFI70943.1; -; Genomic_DNA.
EMBL; KC981239; AGW01115.1; -; Genomic_DNA.
EMBL; KJ526468; AHW49073.1; -; Genomic_DNA.
EMBL; KJ526469; AHW49074.1; -; Genomic_DNA.
EMBL; KJ526472; AHW49077.1; -; Genomic_DNA.
EMBL; KJ717942; AID18741.1; -; Genomic_DNA.
EMBL; KJ789182; AIT55765.1; -; Genomic_DNA.
EMBL; KM061380; AJD79508.1; -; Genomic_DNA.
EMBL; KP098534; AJW72260.1; -; Genomic_DNA.
EMBL; KM189912; AKG93991.1; -; Genomic_DNA.
EMBL; KM189913; AKG94057.1; -; Genomic_DNA.
EMBL; KM189914; AKG94123.1; -; Genomic_DNA.
EMBL; KP722022; ALT14246.1; -; Genomic_DNA.
EMBL; KT824771; AML81206.1; -; Genomic_DNA.
EMBL; KU360259; AMO42744.1; -; Genomic_DNA.
EMBL; KU057086; ANR01140.1; -; Genomic_DNA.
EMBL; KU315430; ANZ03054.1; -; Genomic_DNA.
EMBL; KU552118; APT68441.1; -; Genomic_DNA.
EMBL; KX423960; ARJ55455.1; -; Genomic_DNA.
UniPathway; UPA00326; -.
Proteomes; UP000104419; Genome.
Proteomes; UP000113935; Genome.
Proteomes; UP000113972; Genome.
Proteomes; UP000119561; Genome.
Proteomes; UP000128799; Genome.
Proteomes; UP000128830; Genome.
Proteomes; UP000142350; Genome.
Proteomes; UP000144334; Genome.
Proteomes; UP000150587; Genome.
Proteomes; UP000154438; Genome.
Proteomes; UP000157067; Genome.
Proteomes; UP000158331; Genome.
Proteomes; UP000166532; Genome.
Proteomes; UP000181035; Genome.
Proteomes; UP000181576; Genome.
GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-UniRule.
GO; GO:0004748; F:ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor; IEA:UniProtKB-UniRule.
GO; GO:0009186; P:deoxyribonucleoside diphosphate metabolic process; IEA:UniProtKB-UniRule.
GO; GO:0009263; P:deoxyribonucleotide biosynthetic process; IEA:InterPro.
GO; GO:0006260; P:DNA replication; IEA:UniProtKB-UniRule.
CDD; cd01049; RNRR2; 1.
HAMAP; MF_04028; HSV_RIR2; 1.
InterPro; IPR009078; Ferritin-like_SF.
InterPro; IPR034715; HSV_RIR2.
InterPro; IPR033909; RNR_small.
InterPro; IPR030475; RNR_small_AS.
InterPro; IPR000358; RNR_small_fam.
PANTHER; PTHR23409; PTHR23409; 1.
Pfam; PF00268; Ribonuc_red_sm; 1.
SUPFAM; SSF47240; SSF47240; 1.
PROSITE; PS00368; RIBORED_SMALL; 1.
3: Inferred from homology;
Complete proteome {ECO:0000313|Proteomes:UP000104419,
ECO:0000313|Proteomes:UP000113935, ECO:0000313|Proteomes:UP000113972,
ECO:0000313|Proteomes:UP000119561};
DNA replication {ECO:0000256|HAMAP-Rule:MF_04028};
Iron {ECO:0000256|HAMAP-Rule:MF_04028};
Metal-binding {ECO:0000256|HAMAP-Rule:MF_04028};
Oxidoreductase {ECO:0000256|HAMAP-Rule:MF_04028}.
ACT_SITE 97 97 {ECO:0000256|HAMAP-Rule:MF_04028}.
METAL 60 60 Iron 1. {ECO:0000256|HAMAP-
Rule:MF_04028}.
METAL 90 90 Iron 1. {ECO:0000256|HAMAP-
Rule:MF_04028}.
METAL 90 90 Iron 2. {ECO:0000256|HAMAP-
Rule:MF_04028}.
METAL 93 93 Iron 1. {ECO:0000256|HAMAP-
Rule:MF_04028}.
METAL 153 153 Iron 2. {ECO:0000256|HAMAP-
Rule:MF_04028}.
METAL 187 187 Iron 2. {ECO:0000256|HAMAP-
Rule:MF_04028}.
METAL 190 190 Iron 2. {ECO:0000256|HAMAP-
Rule:MF_04028}.
SEQUENCE 303 AA; 34349 MW; BF7F19FB3AB7A9CC CRC64;
MEYFYTSQCP DMDHLRSLSV ANRWLETDLP LGDDAKDVAA LSEAELEFYR FLFAFLSAAD
DLVNVNLGSL SELFTQKDIL HYYIEQECIE VVHSRVYSAI QLMLFRGDAA ARERYVRAAL
RDEAIRRKVE WLDSRVAECA SVAEKYLLMI LIEGIFFASS FASISYLRTH NLFVVTCQSN
DFISRDEAIH TSASCCIYNN YLGDAPRPDE ARIHQLFAEA VEIECEFLRA RAPRDSLLLD
LPAIISYVRY SADRLLQAIG ASPLFGAPAP AADFPMALMV AEKHTNFFER RSTNYTGTVV
NDL


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