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Ribosome biogenesis protein TSR3 (20S rRNA accumulation protein 3)

 TSR3_YEAST              Reviewed;         313 AA.
Q12094; D6W272;
01-NOV-1997, integrated into UniProtKB/Swiss-Prot.
01-NOV-1996, sequence version 1.
12-SEP-2018, entry version 128.
RecName: Full=Ribosome biogenesis protein TSR3 {ECO:0000255|HAMAP-Rule:MF_03146};
AltName: Full=20S rRNA accumulation protein 3;
Name=TSR3 {ECO:0000255|HAMAP-Rule:MF_03146};
OrderedLocusNames=YOR006C; ORFNames=UND313;
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast).
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina;
Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces.
NCBI_TaxID=559292;
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
PubMed=8896276;
DOI=10.1002/(SICI)1097-0061(199609)12:10B<1091::AID-YEA22>3.3.CO;2-9;
Sterky F., Holmberg A., Pettersson B., Uhlen M.;
"The sequence of a 30 kb fragment on the left arm of chromosome XV
from Saccharomyces cerevisiae reveals 15 open reading frames, five of
which correspond to previously identified genes.";
Yeast 12:1091-1095(1996).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=ATCC 204508 / S288c;
PubMed=9169874;
Dujon B., Albermann K., Aldea M., Alexandraki D., Ansorge W.,
Arino J., Benes V., Bohn C., Bolotin-Fukuhara M., Bordonne R.,
Boyer J., Camasses A., Casamayor A., Casas C., Cheret G.,
Cziepluch C., Daignan-Fornier B., Dang V.-D., de Haan M., Delius H.,
Durand P., Fairhead C., Feldmann H., Gaillon L., Galisson F.,
Gamo F.-J., Gancedo C., Goffeau A., Goulding S.E., Grivell L.A.,
Habbig B., Hand N.J., Hani J., Hattenhorst U., Hebling U.,
Hernando Y., Herrero E., Heumann K., Hiesel R., Hilger F., Hofmann B.,
Hollenberg C.P., Hughes B., Jauniaux J.-C., Kalogeropoulos A.,
Katsoulou C., Kordes E., Lafuente M.J., Landt O., Louis E.J.,
Maarse A.C., Madania A., Mannhaupt G., Marck C., Martin R.P.,
Mewes H.-W., Michaux G., Paces V., Parle-McDermott A.G., Pearson B.M.,
Perrin A., Pettersson B., Poch O., Pohl T.M., Poirey R.,
Portetelle D., Pujol A., Purnelle B., Ramezani Rad M., Rechmann S.,
Schwager C., Schweizer M., Sor F., Sterky F., Tarassov I.A.,
Teodoru C., Tettelin H., Thierry A., Tobiasch E., Tzermia M.,
Uhlen M., Unseld M., Valens M., Vandenbol M., Vetter I., Vlcek C.,
Voet M., Volckaert G., Voss H., Wambutt R., Wedler H., Wiemann S.,
Winsor B., Wolfe K.H., Zollner A., Zumstein E., Kleine K.;
"The nucleotide sequence of Saccharomyces cerevisiae chromosome XV.";
Nature 387:98-102(1997).
[3]
GENOME REANNOTATION.
STRAIN=ATCC 204508 / S288c;
PubMed=24374639; DOI=10.1534/g3.113.008995;
Engel S.R., Dietrich F.S., Fisk D.G., Binkley G., Balakrishnan R.,
Costanzo M.C., Dwight S.S., Hitz B.C., Karra K., Nash R.S., Weng S.,
Wong E.D., Lloyd P., Skrzypek M.S., Miyasato S.R., Simison M.,
Cherry J.M.;
"The reference genome sequence of Saccharomyces cerevisiae: Then and
now.";
G3 (Bethesda) 4:389-398(2014).
[4]
SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
PubMed=14562095; DOI=10.1038/nature02026;
Huh W.-K., Falvo J.V., Gerke L.C., Carroll A.S., Howson R.W.,
Weissman J.S., O'Shea E.K.;
"Global analysis of protein localization in budding yeast.";
Nature 425:686-691(2003).
[5]
LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
PubMed=14562106; DOI=10.1038/nature02046;
Ghaemmaghami S., Huh W.-K., Bower K., Howson R.W., Belle A.,
Dephoure N., O'Shea E.K., Weissman J.S.;
"Global analysis of protein expression in yeast.";
Nature 425:737-741(2003).
[6]
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
STRAIN=ADR376;
PubMed=17330950; DOI=10.1021/pr060559j;
Li X., Gerber S.A., Rudner A.D., Beausoleil S.A., Haas W., Villen J.,
Elias J.E., Gygi S.P.;
"Large-scale phosphorylation analysis of alpha-factor-arrested
Saccharomyces cerevisiae.";
J. Proteome Res. 6:1190-1197(2007).
[7]
FUNCTION.
PubMed=19806183; DOI=10.1371/journal.pbio.1000213;
Li Z., Lee I., Moradi E., Hung N.J., Johnson A.W., Marcotte E.M.;
"Rational extension of the ribosome biogenesis pathway using network-
guided genetics.";
PLoS Biol. 7:E1000213-E1000213(2009).
[8]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-286 AND SER-289, AND
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
PubMed=19779198; DOI=10.1126/science.1172867;
Holt L.J., Tuch B.B., Villen J., Johnson A.D., Gygi S.P., Morgan D.O.;
"Global analysis of Cdk1 substrate phosphorylation sites provides
insights into evolution.";
Science 325:1682-1686(2009).
-!- FUNCTION: Ribosome biogenesis protein required for processing 35S
pre-rRNA at site D. {ECO:0000255|HAMAP-Rule:MF_03146,
ECO:0000269|PubMed:19806183}.
-!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_03146,
ECO:0000269|PubMed:14562095}. Nucleus {ECO:0000255|HAMAP-
Rule:MF_03146, ECO:0000269|PubMed:14562095}.
-!- MISCELLANEOUS: Present with 3610 molecules/cell in log phase SD
medium. {ECO:0000269|PubMed:14562106}.
-!- SIMILARITY: Belongs to the TSR3 family. {ECO:0000255|HAMAP-
Rule:MF_03146}.
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EMBL; U43491; AAC49486.1; -; Genomic_DNA.
EMBL; Z74914; CAA99194.1; -; Genomic_DNA.
EMBL; BK006948; DAA10788.1; -; Genomic_DNA.
PIR; S61990; S61990.
RefSeq; NP_014648.1; NM_001183425.1.
ProteinModelPortal; Q12094; -.
SMR; Q12094; -.
BioGrid; 34409; 137.
DIP; DIP-1251N; -.
IntAct; Q12094; 6.
MINT; Q12094; -.
STRING; 4932.YOR006C; -.
iPTMnet; Q12094; -.
MaxQB; Q12094; -.
PaxDb; Q12094; -.
PRIDE; Q12094; -.
EnsemblFungi; YOR006C; YOR006C; YOR006C.
GeneID; 854167; -.
KEGG; sce:YOR006C; -.
EuPathDB; FungiDB:YOR006C; -.
SGD; S000005532; TSR3.
GeneTree; ENSGT00390000014665; -.
InParanoid; Q12094; -.
KO; K09140; -.
OMA; SNGHKSK; -.
OrthoDB; EOG092C5BZ8; -.
BioCyc; YEAST:G3O-33556-MONOMER; -.
PRO; PR:Q12094; -.
Proteomes; UP000002311; Chromosome XV.
GO; GO:0005737; C:cytoplasm; IDA:SGD.
GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO; GO:0016740; F:transferase activity; IMP:SGD.
GO; GO:0030490; P:maturation of SSU-rRNA; IMP:SGD.
HAMAP; MF_01116; TSR3; 1.
InterPro; IPR022968; Rbsm_biogenesis.
InterPro; IPR007209; RNaseL-inhib_metal-bd_dom.
InterPro; IPR007177; TDD_dom.
PANTHER; PTHR20426; PTHR20426; 1.
Pfam; PF04034; Ribo_biogen_C; 1.
Pfam; PF04068; RLI; 1.
ProDom; PD016638; DUF367; 1.
1: Evidence at protein level;
Complete proteome; Cytoplasm; Nucleus; Phosphoprotein;
Reference proteome; Ribosome biogenesis; rRNA processing.
CHAIN 1 313 Ribosome biogenesis protein TSR3.
/FTId=PRO_0000094426.
MOD_RES 286 286 Phosphoserine.
{ECO:0000244|PubMed:19779198}.
MOD_RES 289 289 Phosphoserine.
{ECO:0000244|PubMed:19779198}.
SEQUENCE 313 AA; 35686 MW; 6DF4703EA7252910 CRC64;
MGKGKNKMHE PKNGRPQRGA NGHSSRQNHR RMEMKYDNSE KMKFPVKLAM WDFDHCDPKR
CSGKKLERLG LIKSLRVGQK FQGIVVSPNG KGVVCPDDLE IVEQHGASVV ECSWARLEEV
PFNKIGGKHE RLLPYLVAAN QVNYGRPWRL NCVEALAACF AIVGRMDWAS ELLSHFSWGM
GFLELNKELL EIYQQCTDCD SVKRAEEEWL QKLEKETQER KSRAKEEDIW MMGNINRRGN
GSQSDTSESE ENSEQSDLEG NNQCIEYDSL GNAIRIDNMK SREAQSEESE DEESGSKENG
EPLSYDPLGN LIR


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