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SEC24 homolog B, COPII coat complex component (SEC24 related gene family, member B (S. cerevisiae) (Predicted))

 D3ZW15_RAT              Unreviewed;      1242 AA.
D3ZW15;
20-APR-2010, integrated into UniProtKB/TrEMBL.
20-APR-2010, sequence version 1.
23-MAY-2018, entry version 71.
SubName: Full=SEC24 homolog B, COPII coat complex component {ECO:0000313|Ensembl:ENSRNOP00000037163};
SubName: Full=SEC24 related gene family, member B (S. cerevisiae) (Predicted) {ECO:0000313|EMBL:EDL82195.1};
Name=Sec24b {ECO:0000313|Ensembl:ENSRNOP00000037163,
ECO:0000313|RGD:1309358};
Synonyms=Sec24b_predicted {ECO:0000313|EMBL:EDL82195.1};
ORFNames=rCG_28935 {ECO:0000313|EMBL:EDL82195.1};
Rattus norvegicus (Rat).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
NCBI_TaxID=10116 {ECO:0000313|Ensembl:ENSRNOP00000037163, ECO:0000313|Proteomes:UP000002494};
[1] {ECO:0000313|Ensembl:ENSRNOP00000037163, ECO:0000313|Proteomes:UP000002494}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Brown Norway {ECO:0000313|Ensembl:ENSRNOP00000037163,
ECO:0000313|Proteomes:UP000002494};
PubMed=15057822; DOI=10.1038/nature02426;
Rat Genome Sequencing Project Consortium;
Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J.,
Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G.,
Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G.,
Morgan M., Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G.,
Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S.,
Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T.,
Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T.,
Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A.,
Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M.,
Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K.,
Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S.,
Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J.,
Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y.,
Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A.,
Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J.,
D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R.,
Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A.,
Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E.,
Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E.,
Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J.,
Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D.,
Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M.,
Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O.,
Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O.,
Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H.,
Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S.,
Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J.,
Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M.,
Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E.,
Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F.,
Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K.,
Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S.,
Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M.,
Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M.,
Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A.,
Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S.,
Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G.,
Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H.,
Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R.,
Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M.,
Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H.,
Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S.,
Collins F.S.;
"Genome sequence of the Brown Norway rat yields insights into
mammalian evolution.";
Nature 428:493-521(2004).
[2] {ECO:0000313|EMBL:EDL82195.1}
NUCLEOTIDE SEQUENCE.
STRAIN=BN {ECO:0000313|EMBL:EDL82195.1};
PubMed=15632090; DOI=10.1101/gr.2889405;
Florea L., Di Francesco V., Miller J., Turner R., Yao A., Harris M.,
Walenz B., Mobarry C., Merkulov G.V., Charlab R., Dew I., Deng Z.,
Istrail S., Li P., Sutton G.;
"Gene and alternative splicing annotation with AIR.";
Genome Res. 15:54-66(2005).
[3] {ECO:0000313|EMBL:EDL82195.1}
NUCLEOTIDE SEQUENCE.
STRAIN=BN {ECO:0000313|EMBL:EDL82195.1};
Mural R.J., Li P.W., Adams M.D., Amanatides P.G., Baden-Tillson H.,
Barnstead M., Chin S.H., Dew I., Evans C.A., Ferriera S., Flanigan M.,
Fosler C., Glodek A., Gu Z., Holt R.A., Jennings D., Kraft C.L.,
Lu F., Nguyen T., Nusskern D.R., Pfannkoch C.M., Sitter C.,
Sutton G.G., Venter J.C., Wang Z., Woodage T., Zheng X.H., Zhong F.;
Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases.
[4] {ECO:0000313|Ensembl:ENSRNOP00000037163}
IDENTIFICATION.
STRAIN=Brown Norway {ECO:0000313|Ensembl:ENSRNOP00000037163};
Ensembl;
Submitted (JUL-2011) to UniProtKB.
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EMBL; AABR07013248; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; CH473952; EDL82195.1; -; Genomic_DNA.
RefSeq; NP_001099944.1; NM_001106474.1.
UniGene; Rn.102003; -.
STRING; 10116.ENSRNOP00000037163; -.
PeptideAtlas; D3ZW15; -.
PRIDE; D3ZW15; -.
Ensembl; ENSRNOT00000038509; ENSRNOP00000037163; ENSRNOG00000023373.
GeneID; 295461; -.
KEGG; rno:295461; -.
CTD; 10427; -.
RGD; 1309358; Sec24b.
eggNOG; KOG1985; Eukaryota.
eggNOG; COG5028; LUCA.
GeneTree; ENSGT00590000082962; -.
KO; K14007; -.
OMA; NILPMTP; -.
OrthoDB; EOG091G011M; -.
TreeFam; TF354244; -.
Reactome; R-RNO-204005; COPII-mediated vesicle transport.
Reactome; R-RNO-2132295; MHC class II antigen presentation.
Reactome; R-RNO-5694530; Cargo concentration in the ER.
Reactome; R-RNO-983170; Antigen Presentation: Folding, assembly and peptide loading of class I MHC.
Proteomes; UP000002494; Chromosome 2.
Bgee; ENSRNOG00000023373; -.
GO; GO:0030127; C:COPII vesicle coat; IEA:Ensembl.
GO; GO:0030134; C:COPII-coated ER to Golgi transport vesicle; IDA:MGI.
GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
GO; GO:0035909; P:aorta morphogenesis; IEA:Ensembl.
GO; GO:0060088; P:auditory receptor cell stereocilium organization; IEA:Ensembl.
GO; GO:0021747; P:cochlear nucleus development; IEA:Ensembl.
GO; GO:0060982; P:coronary artery morphogenesis; IEA:Ensembl.
GO; GO:0006888; P:ER to Golgi vesicle-mediated transport; IEA:InterPro.
GO; GO:0006886; P:intracellular protein transport; IEA:InterPro.
GO; GO:0060463; P:lung lobe morphogenesis; IEA:Ensembl.
GO; GO:0001843; P:neural tube closure; IEA:Ensembl.
GO; GO:0003151; P:outflow tract morphogenesis; IEA:Ensembl.
GO; GO:0061156; P:pulmonary artery morphogenesis; IEA:Ensembl.
GO; GO:1901301; P:regulation of cargo loading into COPII-coated vesicle; IEA:Ensembl.
GO; GO:0090178; P:regulation of establishment of planar polarity involved in neural tube closure; IEA:Ensembl.
Gene3D; 3.40.20.10; -; 1.
Gene3D; 3.40.50.410; -; 1.
InterPro; IPR029006; ADF-H/Gelsolin-like_dom_sf.
InterPro; IPR007123; Gelsolin-like_dom.
InterPro; IPR036180; Gelsolin-like_dom_sf.
InterPro; IPR006900; Sec23/24_helical_dom.
InterPro; IPR036175; Sec23/24_helical_dom_sf.
InterPro; IPR006896; Sec23/24_trunk_dom.
InterPro; IPR012990; Sec23_24_beta_S.
InterPro; IPR036465; vWFA_dom_sf.
InterPro; IPR006895; Znf_Sec23_Sec24.
InterPro; IPR036174; Znf_Sec23_Sec24_sf.
Pfam; PF00626; Gelsolin; 1.
Pfam; PF08033; Sec23_BS; 1.
Pfam; PF04815; Sec23_helical; 1.
Pfam; PF04811; Sec23_trunk; 1.
Pfam; PF04810; zf-Sec23_Sec24; 1.
SUPFAM; SSF53300; SSF53300; 1.
SUPFAM; SSF81811; SSF81811; 1.
SUPFAM; SSF82754; SSF82754; 1.
SUPFAM; SSF82919; SSF82919; 1.
1: Evidence at protein level;
Complete proteome {ECO:0000313|Proteomes:UP000002494};
Protein transport {ECO:0000256|SAAS:SAAS00748918};
Proteomics identification {ECO:0000213|PeptideAtlas:D3ZW15};
Reference proteome {ECO:0000313|Proteomes:UP000002494};
Transport {ECO:0000256|SAAS:SAAS00748918}.
DOMAIN 576 612 zf-Sec23_Sec24.
{ECO:0000259|Pfam:PF04810}.
DOMAIN 649 888 Sec23_trunk. {ECO:0000259|Pfam:PF04811}.
DOMAIN 893 977 Sec23_BS. {ECO:0000259|Pfam:PF08033}.
DOMAIN 988 1088 Sec23_helical.
{ECO:0000259|Pfam:PF04815}.
DOMAIN 1115 1180 Gelsolin-like.
{ECO:0000259|Pfam:PF00626}.
SEQUENCE 1242 AA; 134716 MW; 711261A2F3B51EC0 CRC64;
MSAPAGSPHP AAGARMPPKL GGAVSGLAPP QQNGPAQSQM QVPSGYGLPH QNYMAPSGHY
SQGPGKMTSL PLDNQCENYY SRPYTAPTQN VGTPSSANQP GAQLMYGRGP SAPHMGASMP
GPFQGAPASA SHSYPSASQP YSSLGNRYSS PATYSATASV ASQGYPSTCS HYPISTVSNV
VYPNVSYPSL PASEPYGQMF TSQSAPPPAR PLKESYSGPS TAVAYPSRPP PPPSQHQQQQ
QQQQQQQQQS HSGYSSLPWS GPGLPPAQDS LIRNQMGSLA IPNSHPAINE NVQPPKPSSV
VATVLPGPSS TRMPPAPSHP VGPVPSAPPP PEQMQTKGMQ YGDYVNNQAS STPTPLSSAS
DDEEEEDEDE EAGVDSSSTT SSASPLPNSY DALEGGSYPD MHSSSASSPV PDRAPEPNST
LVPTPTAAQP AKVAKPFGYG YPTLQPAYQN AAAPPTTAHP SGPAYSGYPQ QYPGVHQLSS
GLGGLSLQSS PQPESLRPVN LTQEKNILPA TPIWAPVPNL SAELSKLNCS PDSFRCTLTS
IPQTQALLNK AKLPLGLLLH PFRDLTQLPV ITSNTIVRCR SCRTYINPFV SFIDQRRWKC
NLCYRVNDVP EEFLYNPLTR SYGEPHKRPE VQNSTVEFIA SSDYMLRPPQ PAVYLFVLDV
SHNAVEAGYL TVLCQSLLEN LDKLPGDSRT RIGFMTFDST IHFYNLQEGL SQPQMLIVSD
IDDVFLPTPD SLLVNLYESK ELIKDLLNAL PNMFINTRET HSALGPALQA AFKLMSPTGG
RVSVFQTQLP SLGAGLLQSR EDPNQRSSTK VVHHLGPATD FYKKLALDCS GQQTAVDLFL
LSSQYSDLAS LACMSKYSAG CIFYYPSFHS THNPSQAEKL QKDLKRYLTR KIGFEAVMRI
RCTKGLSMHT FHGNFFVRST DLLSLANINP DAGFAVQLSI EESLADTSLV CFQTALLYTS
SKGERRIRVH TLCLPVVSSL ADVYAGVDVQ AAICLLANMA VDRSVSSSLS DARDALVNAV
VDPLSAYSSA VSSVPRSTLT APSSLKLLPL YVLALLKQKA FRTGTSTRLD DRVYAMCQMK
SQPLVHLMKM IHPNLYRIDR LTDEGAIHVN DRVVPQPPLQ KLSAEKLTRE GAFLMDCGSV
FYIWIGKGCD SNFIENVLGY PDFGSIPQKM THLPELDTLP SERTRSFVTW LRDSRPLSPV
LHVVKDESPA RTDFFQHLVE DRTEAALSYY EFLIHVQQQV CK


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