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SNF2 histone linker PHD RING helicase (SNF2 histone linker PHD RING helicase (Predicted))

 D4A9B2_RAT              Unreviewed;      1701 AA.
D4A9B2;
20-APR-2010, integrated into UniProtKB/TrEMBL.
20-APR-2010, sequence version 1.
12-SEP-2018, entry version 82.
SubName: Full=SNF2 histone linker PHD RING helicase {ECO:0000313|Ensembl:ENSRNOP00000019893};
SubName: Full=SNF2 histone linker PHD RING helicase (Predicted) {ECO:0000313|EMBL:EDL93714.1};
Name=Shprh {ECO:0000313|Ensembl:ENSRNOP00000019893,
ECO:0000313|RGD:1310342};
Synonyms=Shprh_predicted {ECO:0000313|EMBL:EDL93714.1};
ORFNames=rCG_57400 {ECO:0000313|EMBL:EDL93714.1};
Rattus norvegicus (Rat).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
NCBI_TaxID=10116 {ECO:0000313|Ensembl:ENSRNOP00000019893, ECO:0000313|Proteomes:UP000002494};
[1] {ECO:0000313|Ensembl:ENSRNOP00000019893, ECO:0000313|Proteomes:UP000002494}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Brown Norway {ECO:0000313|Ensembl:ENSRNOP00000019893,
ECO:0000313|Proteomes:UP000002494};
PubMed=15057822; DOI=10.1038/nature02426;
Rat Genome Sequencing Project Consortium;
Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J.,
Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G.,
Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G.,
Morgan M., Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G.,
Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S.,
Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T.,
Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T.,
Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A.,
Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M.,
Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K.,
Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S.,
Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J.,
Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y.,
Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A.,
Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J.,
D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R.,
Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A.,
Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E.,
Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E.,
Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J.,
Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D.,
Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M.,
Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O.,
Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O.,
Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H.,
Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S.,
Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J.,
Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M.,
Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E.,
Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F.,
Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K.,
Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S.,
Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M.,
Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M.,
Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A.,
Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S.,
Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G.,
Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H.,
Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R.,
Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M.,
Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H.,
Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S.,
Collins F.S.;
"Genome sequence of the Brown Norway rat yields insights into
mammalian evolution.";
Nature 428:493-521(2004).
[2] {ECO:0000313|EMBL:EDL93714.1}
NUCLEOTIDE SEQUENCE.
STRAIN=BN {ECO:0000313|EMBL:EDL93714.1};
PubMed=15632090; DOI=10.1101/gr.2889405;
Florea L., Di Francesco V., Miller J., Turner R., Yao A., Harris M.,
Walenz B., Mobarry C., Merkulov G.V., Charlab R., Dew I., Deng Z.,
Istrail S., Li P., Sutton G.;
"Gene and alternative splicing annotation with AIR.";
Genome Res. 15:54-66(2005).
[3] {ECO:0000313|EMBL:EDL93714.1}
NUCLEOTIDE SEQUENCE.
STRAIN=BN {ECO:0000313|EMBL:EDL93714.1};
Mural R.J., Li P.W., Adams M.D., Amanatides P.G., Baden-Tillson H.,
Barnstead M., Chin S.H., Dew I., Evans C.A., Ferriera S., Flanigan M.,
Fosler C., Glodek A., Gu Z., Holt R.A., Jennings D., Kraft C.L.,
Lu F., Nguyen T., Nusskern D.R., Pfannkoch C.M., Sitter C.,
Sutton G.G., Venter J.C., Wang Z., Woodage T., Zheng X.H., Zhong F.;
Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases.
[4] {ECO:0000313|Ensembl:ENSRNOP00000019893}
IDENTIFICATION.
STRAIN=Brown Norway {ECO:0000313|Ensembl:ENSRNOP00000019893};
Ensembl;
Submitted (JUL-2011) to UniProtKB.
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EMBL; AABR07000222; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; AABR07000223; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; CH473994; EDL93714.1; -; Genomic_DNA.
RefSeq; NP_001100940.1; NM_001107470.1.
UniGene; Rn.2515; -.
STRING; 10116.ENSRNOP00000019893; -.
Ensembl; ENSRNOT00000019893; ENSRNOP00000019893; ENSRNOG00000014450.
GeneID; 308282; -.
KEGG; rno:308282; -.
UCSC; RGD:1310342; rat.
CTD; 257218; -.
RGD; 1310342; Shprh.
eggNOG; KOG0298; Eukaryota.
eggNOG; COG0553; LUCA.
GeneTree; ENSGT00730000111123; -.
KO; K15710; -.
OMA; LRVLVYQ; -.
OrthoDB; EOG091G015O; -.
TreeFam; TF324273; -.
Proteomes; UP000002494; Chromosome 1.
Bgee; ENSRNOG00000014450; Expressed in 9 organ(s), highest expression level in brain.
GO; GO:0000786; C:nucleosome; IEA:InterPro.
GO; GO:0005634; C:nucleus; IEA:InterPro.
GO; GO:0005524; F:ATP binding; IEA:InterPro.
GO; GO:0003677; F:DNA binding; IEA:InterPro.
GO; GO:0004386; F:helicase activity; IEA:UniProtKB-KW.
GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO; GO:0031625; F:ubiquitin protein ligase binding; IEA:Ensembl.
GO; GO:0004842; F:ubiquitin-protein transferase activity; IEA:Ensembl.
GO; GO:0006974; P:cellular response to DNA damage stimulus; IEA:Ensembl.
GO; GO:0006334; P:nucleosome assembly; IEA:InterPro.
GO; GO:0000209; P:protein polyubiquitination; IEA:Ensembl.
CDD; cd00073; H15; 1.
CDD; cd00079; HELICc; 1.
Gene3D; 1.10.10.10; -; 1.
Gene3D; 3.30.40.10; -; 2.
Gene3D; 3.40.50.10810; -; 2.
InterPro; IPR014001; Helicase_ATP-bd.
InterPro; IPR001650; Helicase_C.
InterPro; IPR005818; Histone_H1/H5_H15.
InterPro; IPR027417; P-loop_NTPase.
InterPro; IPR038718; SNF2-like_sf.
InterPro; IPR000330; SNF2_N.
InterPro; IPR036388; WH-like_DNA-bd_sf.
InterPro; IPR036390; WH_DNA-bd_sf.
InterPro; IPR019786; Zinc_finger_PHD-type_CS.
InterPro; IPR011011; Znf_FYVE_PHD.
InterPro; IPR001965; Znf_PHD.
InterPro; IPR001841; Znf_RING.
InterPro; IPR013083; Znf_RING/FYVE/PHD.
Pfam; PF00271; Helicase_C; 1.
Pfam; PF00538; Linker_histone; 1.
Pfam; PF00176; SNF2_N; 1.
SMART; SM00487; DEXDc; 1.
SMART; SM00526; H15; 1.
SMART; SM00490; HELICc; 1.
SMART; SM00249; PHD; 1.
SUPFAM; SSF46785; SSF46785; 1.
SUPFAM; SSF52540; SSF52540; 6.
SUPFAM; SSF57903; SSF57903; 1.
PROSITE; PS51504; H15; 1.
PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
PROSITE; PS51194; HELICASE_CTER; 1.
PROSITE; PS01359; ZF_PHD_1; 1.
PROSITE; PS50089; ZF_RING_2; 1.
4: Predicted;
ATP-binding {ECO:0000313|EMBL:EDL93714.1};
Coiled coil {ECO:0000256|SAM:Coils};
Complete proteome {ECO:0000313|Proteomes:UP000002494};
Helicase {ECO:0000313|EMBL:EDL93714.1};
Hydrolase {ECO:0000313|EMBL:EDL93714.1};
Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00175,
ECO:0000256|SAAS:SAAS01007077};
Nucleotide-binding {ECO:0000313|EMBL:EDL93714.1};
Reference proteome {ECO:0000313|Proteomes:UP000002494};
Zinc {ECO:0000256|PROSITE-ProRule:PRU00175,
ECO:0000256|SAAS:SAAS01007077};
Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00175,
ECO:0000256|SAAS:SAAS01007077}.
DOMAIN 431 505 H15. {ECO:0000259|PROSITE:PS51504}.
DOMAIN 705 866 Helicase ATP-binding.
{ECO:0000259|PROSITE:PS51192}.
DOMAIN 1450 1497 RING-type. {ECO:0000259|PROSITE:PS50089}.
DOMAIN 1532 1690 Helicase C-terminal.
{ECO:0000259|PROSITE:PS51194}.
COILED 1132 1152 {ECO:0000256|SAM:Coils}.
SEQUENCE 1701 AA; 194705 MW; 1E6CA4ECD9E164DF CRC64;
MSSRRKRAPP MKVDEERQQQ LRWNMHEDLR NEPLSLTEEE RACWDADSSD CIIIDDDPPE
GAAHRDKKRC TESVSILNST EKETPLSVAL NVTISPHPSD DSWKAFLGDF VLQLLPEESL
VEHFSERTFT LMSSESSSQL LIYVHSECNN VEKEENVLKG PASIYGKGIR VESSFSSDML
QDLAWLQKRR GIKLYQRPEG THTIKVRIYL LEAGLTRLDF MSDAGSRMKK FNQLLKRVMG
KLYSLSIPDV LEEDEEESES EPEGQDIDEL YQFVKRTHQQ EAKSVQVDVQ HPALIPVLRP
YQREAVNWML QQEQFRSTPA DNSLHFLWRE IVTPDGLNLY YNPYTGCIIR DFPHAGPQLL
GGILADEMGL GKTVEVLALI LTHTRQDVRQ DALTLPEGKV VNYFIPTHCP RGKVKSREIQ
NTECEPKEKV HCPPTRVMIL TAVKEMNGKK GVSILSIYKY VSSTFRYDVQ RNRSLLKRML
KCLIFEGLVK QIKGRGFSGT FTLGKNYKED VFDKTKKQAV GSPQKIEKEL RKSVNKDTDS
EYMPSDIYDD DNDNDDDDDD DPYYYYCKAR KSRKLKKKPV LLTKKEKGQP VNLDSQVEAP
AAGDCASADA HVSESTCVSE NRQIQDAEDC VESPSPAAME LAQSNTASFC ETPDYRFECI
CGEFDQIGRK PRVQCLKCHL WQHAKCVNYE EKNLKVKPFY CPHCLVAMEP VSTRATLIIS
PSSICHQWVD EINRHVRSSS LRVLVYQGVK KDGFLQPHFL AEQDIVIITY DVLRSELNYV
DIPHSNSEDG RRLRNQKRYM AIPSPLVAVE WWRICLDEAQ MVECPTVKAA EMAQRLSGIN
RWCVSGTPVQ RGLEDLFGLV VFLGIEPYCV KHWWIRLLYH PYCKKNPQHL YSFIAKIMWR
SAKKDVIDQI QIPPQTEEMH WLHFSPVERH FYHRQHEVCC QDAVVKLRKI SDWALKLSSL
DRRTVSSILY PLLRLRQACC HPQAVRGEFL PLQKSTMTME ELLTSLQKKC GTECEEAHRQ
LVCALNGLAG IHIIKGRRAQ YRAALALPPP ECVILSEYAL AAELYREVLR SSEEHKGKLK
TDSLQRLHAT HNLMELLVAK HPGIPPTLRD GRLEEEAKQL REHYMSKCNT EVAEAQQALQ
PVQQSIRELQ RKVHSGSPWW LNVVHRAMEY AVDEELVQRV RNEISSNYKH QTDKLSMSEK
FRDCRGLQFL LTTQMEELHK FQKLVREAVK KLEKPPSRDV IESATVCHLR PARLPLNCCV
FCKADELFTE YESKLFSNTV KGQTAIFEEM IEDEEGLVDD RVPTTTRGLW AVSETERSMK
AILSFARSHR FDVEYIDEGS VSMDLFEAWK KEYKLLHEYW MTLRNRVSAV DELAMATERL
RVRHPKEPKP NPPVHHIIEP HEVEQNRIKL VNDKAVATSQ LQKKLGQLLY LTNLEKSQDK
TSGGINPEPC PICARQLGKQ WAVLTCGHCF CNECTSIIIE QYSVGSHRSS IKCAICRQTT
SHKEVSYVFT SEKANQEDDI PVKGSHSTKV EAVVRTLMKI QLKDPGAKAL VFSTWQDVLD
IISKALTDNN MGFTQISRIK TFQENLSAFK YDPQINILLL PLHTGSNGLT IIEATHVLLV
EPILNPAHEL QAIGRVHRIG QTKPTIVHRF LIKATIEERM QAMLKTAERS HTSSSGKHSE
ASALTVADLA DLFTKESEEL E


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