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Secretory 23, isoform D (Secretory 23, isoform F)

 A0A0B4K6T4_DROME        Unreviewed;       780 AA.
A0A0B4K6T4;
01-APR-2015, integrated into UniProtKB/TrEMBL.
01-APR-2015, sequence version 1.
25-OCT-2017, entry version 27.
SubName: Full=Secretory 23, isoform D {ECO:0000313|EMBL:AFH06253.1};
SubName: Full=Secretory 23, isoform F {ECO:0000313|EMBL:AFH06252.1};
Name=Sec23 {ECO:0000313|EMBL:AFH06253.1,
ECO:0000313|FlyBase:FBgn0262125};
Synonyms=CG1250 {ECO:0000313|EMBL:AFH06253.1,
ECO:0000313|FlyBase:FBgn0262125}, COPII {ECO:0000313|EMBL:AFH06253.1},
dar2 {ECO:0000313|EMBL:AFH06253.1},
Dmel\CG1250 {ECO:0000313|EMBL:AFH06253.1},
dSec23 {ECO:0000313|EMBL:AFH06253.1},
dsec23 {ECO:0000313|EMBL:AFH06253.1},
dSec23p {ECO:0000313|EMBL:AFH06253.1},
dsec23p {ECO:0000313|EMBL:AFH06253.1},
hau {ECO:0000313|EMBL:AFH06253.1},
SEC23 {ECO:0000313|EMBL:AFH06253.1},
sec23 {ECO:0000313|EMBL:AFH06253.1},
Sec23A {ECO:0000313|EMBL:AFH06253.1},
Sec23p {ECO:0000313|EMBL:AFH06253.1};
ORFNames=Dmel_CG1250 {ECO:0000313|EMBL:AFH06253.1};
Drosophila melanogaster (Fruit fly).
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha;
Ephydroidea; Drosophilidae; Drosophila; Sophophora.
NCBI_TaxID=7227 {ECO:0000313|EMBL:AFH06253.1, ECO:0000313|Proteomes:UP000000803};
[1] {ECO:0000313|EMBL:AFH06253.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=10731132; DOI=10.1126/science.287.5461.2185;
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D.,
Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F.,
George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N.,
Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X.,
Brandon R.C., Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D.,
Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Gabor G.L.,
Abril J.F., Agbayani A., An H.J., Andrews-Pfannkoch C., Baldwin D.,
Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M.,
Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S.,
Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P.,
Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I.,
Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P.,
de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M.,
Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P.,
Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W.,
Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K.,
Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M.,
Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J.,
Hostin D., Houston K.A., Howland T.J., Wei M.H., Ibegwam C.,
Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A.,
Kimmel B.E., Kodira C.D., Kraft C., Kravitz S., Kulp D., Lai Z.,
Lasko P., Lei Y., Levitsky A.A., Li J., Li Z., Liang Y., Lin X.,
Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D.,
Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A.,
Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L.,
Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M.,
Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G.,
Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H.,
Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.,
Spier E., Spradling A.C., Stapleton M., Strong R., Sun E.,
Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X.,
Wang Z.Y., Wassarman D.A., Weinstock G.M., Weissenbach J.,
Williams S.M., WoodageT, Worley K.C., Wu D., Yang S., Yao Q.A., Ye J.,
Yeh R.F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L.,
Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S., Zhu X., Smith H.O.,
Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.;
"The genome sequence of Drosophila melanogaster.";
Science 287:2185-2195(2000).
[2] {ECO:0000313|EMBL:AFH06253.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537568;
Celniker S.E., Wheeler D.A., Kronmiller B., Carlson J.W., Halpern A.,
Patel S., Adams M., Champe M., Dugan S.P., Frise E., Hodgson A.,
George R.A., Hoskins R.A., Laverty T., Muzny D.M., Nelson C.R.,
Pacleb J.M., Park S., Pfeiffer B.D., Richards S., Sodergren E.J.,
Svirskas R., Tabor P.E., Wan K., Stapleton M., Sutton G.G., Venter C.,
Weinstock G., Scherer S.E., Myers E.W., Gibbs R.A., Rubin G.M.;
"Finishing a whole-genome shotgun: release 3 of the Drosophila
melanogaster euchromatic genome sequence.";
Genome Biol. 3:RESEARCH0079-RESEARCH0079(2002).
[3] {ECO:0000313|EMBL:AFH06253.1, ECO:0000313|Proteomes:UP000000803}
GENOME REANNOTATION.
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537572; DOI=10.1186/gb-2002-3-12-research0083;
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S.,
Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E.,
Smith C.D., Tupy J.L., Whitfied E.J., Bayraktaroglu L., Berman B.P.,
Bettencourt B.R., Celniker S.E., de Grey A.D., Drysdale R.A.,
Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q.,
Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M.,
Lewis S.E.;
"Annotation of the Drosophila melanogaster euchromatic genome: a
systematic review.";
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002).
[4] {ECO:0000313|EMBL:AFH06253.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537573;
Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J., Svirskas R.,
Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M.,
Ashburner M., Celniker S.E.;
"The transposable elements of the Drosophila melanogaster euchromatin:
a genomics perspective.";
Genome Biol. 3:RESEARCH0084.1-RESEARCH0084.20(2002).
[5] {ECO:0000313|EMBL:AFH06253.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537574;
Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A.,
Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G.,
Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M.,
Karpen G.H.;
"Heterochromatic sequences in a Drosophila whole-genome shotgun
assembly.";
Genome Biol. 3:RESEARCH0085-RESEARCH0085(2002).
[6] {ECO:0000313|EMBL:AFH06253.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=16110336; DOI=10.1371/journal.pcbi.0010022;
Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D.,
Ashburner M., Anxolabehere D.;
"Combined evidence annotation of transposable elements in genome
sequences.";
PLoS Comput. Biol. 1:166-175(2005).
[7] {ECO:0000313|EMBL:AFH06253.1}
NUCLEOTIDE SEQUENCE.
Berkeley Drosophila Genome Project;
Celniker S., Carlson J., Wan K., Pfeiffer B., Frise E., George R.,
Hoskins R., Stapleton M., Pacleb J., Park S., Svirskas R., Smith E.,
Yu C., Rubin G.;
"Drosophila melanogaster release 4 sequence.";
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases.
[8] {ECO:0000313|EMBL:AFH06253.1}
NUCLEOTIDE SEQUENCE.
Celniker S., Carlson J., Wan K., Frise E., Hoskins R., Park S.,
Svirskas R., Rubin G.;
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases.
[9] {ECO:0000313|EMBL:AFH06253.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569856; DOI=10.1126/science.1139815;
Smith C.D., Shu S., Mungall C.J., Karpen G.H.;
"The Release 5.1 annotation of Drosophila melanogaster
heterochromatin.";
Science 316:1586-1591(2007).
[10] {ECO:0000313|EMBL:AFH06253.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569867; DOI=10.1126/science.1139816;
Hoskins R.A., Carlson J.W., Kennedy C., Acevedo D., Evans-Holm M.,
Frise E., Wan K.H., Park S., Mendez-Lago M., Rossi F., Villasante A.,
Dimitri P., Karpen G.H., Celniker S.E.;
"Sequence finishing and mapping of Drosophila melanogaster
heterochromatin.";
Science 316:1625-1628(2007).
[11] {ECO:0000313|EMBL:AFH06253.1}
NUCLEOTIDE SEQUENCE.
FlyBase;
Submitted (DEC-2016) to the EMBL/GenBank/DDBJ databases.
-!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|SAAS:SAAS00862199}.
-----------------------------------------------------------------------
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EMBL; AE014297; AFH06252.1; -; Genomic_DNA.
EMBL; AE014297; AFH06253.1; -; Genomic_DNA.
RefSeq; NP_001246933.1; NM_001260004.1.
RefSeq; NP_001246934.1; NM_001260005.2.
UniGene; Dm.11502; -.
SMR; A0A0B4K6T4; -.
EnsemblMetazoa; FBtr0304794; FBpp0293334; FBgn0262125.
EnsemblMetazoa; FBtr0310266; FBpp0301949; FBgn0262125.
GeneID; 40694; -.
CTD; 40694; -.
FlyBase; FBgn0262125; Sec23.
eggNOG; KOG1986; Eukaryota.
eggNOG; COG5047; LUCA.
GeneTree; ENSGT00390000006916; -.
OrthoDB; EOG091G063R; -.
Reactome; R-DME-204005; COPII (Coat Protein 2) Mediated Vesicle Transport.
Reactome; R-DME-5694530; Cargo concentration in the ER.
Reactome; R-DME-983170; Antigen Presentation: Folding, assembly and peptide loading of class I MHC.
GenomeRNAi; 40694; -.
Proteomes; UP000000803; Chromosome 3R.
ExpressionAtlas; A0A0B4K6T4; differential.
GO; GO:0030127; C:COPII vesicle coat; ISS:FlyBase.
GO; GO:0030134; C:COPII-coated ER to Golgi transport vesicle; TAS:FlyBase.
GO; GO:0005783; C:endoplasmic reticulum; IDA:FlyBase.
GO; GO:0070971; C:endoplasmic reticulum exit site; IDA:FlyBase.
GO; GO:0005795; C:Golgi stack; IDA:FlyBase.
GO; GO:0005096; F:GTPase activator activity; ISS:FlyBase.
GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
GO; GO:0071711; P:basement membrane organization; IMP:FlyBase.
GO; GO:0040003; P:chitin-based cuticle development; IMP:FlyBase.
GO; GO:0035293; P:chitin-based larval cuticle pattern formation; IMP:FlyBase.
GO; GO:0007029; P:endoplasmic reticulum organization; IMP:FlyBase.
GO; GO:0006888; P:ER to Golgi vesicle-mediated transport; IEA:InterPro.
GO; GO:0007030; P:Golgi organization; IMP:FlyBase.
GO; GO:0006886; P:intracellular protein transport; IEA:InterPro.
GO; GO:0008363; P:larval chitin-based cuticle development; IMP:FlyBase.
GO; GO:0035149; P:lumen formation, open tracheal system; IMP:FlyBase.
GO; GO:0030011; P:maintenance of cell polarity; IMP:FlyBase.
GO; GO:0016203; P:muscle attachment; IMP:FlyBase.
GO; GO:0048812; P:neuron projection morphogenesis; IMP:FlyBase.
GO; GO:0022409; P:positive regulation of cell-cell adhesion; IMP:FlyBase.
GO; GO:0048081; P:positive regulation of cuticle pigmentation; IMP:FlyBase.
GO; GO:0050775; P:positive regulation of dendrite morphogenesis; IMP:FlyBase.
GO; GO:0003331; P:positive regulation of extracellular matrix constituent secretion; IMP:FlyBase.
GO; GO:0043547; P:positive regulation of GTPase activity; ISS:FlyBase.
GO; GO:0034394; P:protein localization to cell surface; IMP:FlyBase.
GO; GO:0072659; P:protein localization to plasma membrane; IMP:FlyBase.
GO; GO:0008360; P:regulation of cell shape; IMP:FlyBase.
GO; GO:0003400; P:regulation of COPII vesicle coating; ISS:FlyBase.
Gene3D; 3.40.20.10; -; 1.
Gene3D; 3.40.50.410; -; 1.
InterPro; IPR029006; ADF-H/Gelsolin-like_dom.
InterPro; IPR007123; Gelsolin-like_dom.
InterPro; IPR036180; Gelsolin-like_dom_sf.
InterPro; IPR006900; Sec23/24_helical_dom.
InterPro; IPR036175; Sec23/24_helical_dom_sf.
InterPro; IPR006896; Sec23/24_trunk_dom.
InterPro; IPR012990; Sec23_24_beta_S.
InterPro; IPR036465; vWFA_dom_sf.
InterPro; IPR006895; Znf_Sec23_Sec24.
InterPro; IPR036174; Znf_Sec23_Sec24_sf.
Pfam; PF00626; Gelsolin; 1.
Pfam; PF08033; Sec23_BS; 1.
Pfam; PF04815; Sec23_helical; 1.
Pfam; PF04811; Sec23_trunk; 1.
Pfam; PF04810; zf-Sec23_Sec24; 1.
SUPFAM; SSF53300; SSF53300; 1.
SUPFAM; SSF81811; SSF81811; 1.
SUPFAM; SSF82754; SSF82754; 1.
SUPFAM; SSF82919; SSF82919; 1.
1: Evidence at protein level;
Complete proteome {ECO:0000313|Proteomes:UP000000803};
Protein transport {ECO:0000256|SAAS:SAAS00748918};
Proteomics identification {ECO:0000213|PeptideAtlas:A0A0B4K6T4};
Reference proteome {ECO:0000313|Proteomes:UP000000803};
Transport {ECO:0000256|SAAS:SAAS00748918}.
DOMAIN 58 98 zf-Sec23_Sec24.
{ECO:0000259|Pfam:PF04810}.
DOMAIN 127 398 Sec23_trunk. {ECO:0000259|Pfam:PF04811}.
DOMAIN 409 512 Sec23_BS. {ECO:0000259|Pfam:PF08033}.
DOMAIN 526 624 Sec23_helical.
{ECO:0000259|Pfam:PF04815}.
DOMAIN 640 726 Gelsolin-like.
{ECO:0000259|Pfam:PF00626}.
SEQUENCE 780 AA; 87469 MW; 9B1435975E4E5250 CRC64;
MTTYEEFIQQ NEDRDGVRLT WNVWPSSRIE ASRLVVPLAC LYQPLKERPD LPPIQYEPVL
CTRSNCRAIL NPLCQVDYRA KLWVCNFCFQ RNPFPPQYAA ISEQHQPAEL IPGFSTIEYT
ITRAPTMPPV FIFLVDTCMD EEELDALKDS LQMSLSLLPT NALVGLITFG KMIQVHELGA
EGCSKSYVFR GTKDLTAKQV QDMLGIGRGA APGPQQQQHL PGQPAGAAAP VPPAHRFLQP
IGQCDAALGD LLSELQRDPW PVPQGKRYLR STGAALSIAV GLLECTYPNT GGRIMTFVGG
PCSQGPGQVV DDELKHPIRS HHDIHKDNVR FMKKAIKHYD ALALRAATNG HSVDIYSCAL
DQTGLLEMKQ LCNSTGGHMV MGDSFNSSLF KQTFQRVFAR DGRNDLKMAF NATLEVKCSR
ELKISGGIGS CVSLNVKSPS VSDVEIGMGN TVQWKLCTLN PSSTVAYFFE VVNQHAAPIP
QGGRGCIQFI TQYQHPSGQR RIRVTTLARN WADATSNVHH ISAGFDQEAA AVLMARMVVY
RAETDEGPDI LRWVDRQLIR LCQKFGEYSK DDPNSFRLSQ NFSLFPQFMY HLRRSQFLQV
FNNSPDETTF YRHMLMREDL TQSLIMIQPI LYSYSFNGPP EPVLLDTASI QADRILLMDT
FFQILIYHGE TIAQWRALKY QDMPEYENFK QLLQAPVDDA QEILQTRFPM PRYIDTEHGG
SQARFLLSKV NPSQTHNNMY AYGQAPIGQV TDGGAPVLTD DVSLQLFMEH LKKLAVSTTT


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