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Serine/arginine-rich splicing factor SR34A (At-SR34A) (At-SRp34A) (AtSR34A) (SER/ARG-rich protein 34A)

 SR34A_ARATH             Reviewed;         300 AA.
A2RVS6; A0A1I9LMJ8; A8MR30; Q9CA06; Q9SCL3;
09-JUL-2014, integrated into UniProtKB/Swiss-Prot.
06-MAR-2007, sequence version 1.
25-OCT-2017, entry version 91.
RecName: Full=Serine/arginine-rich splicing factor SR34A;
Short=At-SR34A;
Short=At-SRp34A;
Short=AtSR34A;
AltName: Full=SER/ARG-rich protein 34A;
Name=SR34A; Synonyms=SRP34A; OrderedLocusNames=At3g49430;
ORFNames=T1G12.13, T9C5.30;
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=11130713; DOI=10.1038/35048706;
Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M.,
Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B.,
Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P.,
De Simone V., Choisne N., Artiguenave F., Robert C., Brottier P.,
Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F.,
Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V.,
Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S.,
Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G.,
Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B.,
Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G.,
Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J.,
Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D.,
Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
Monfort A., Argiriou A., Flores M., Liguori R., Vitale D.,
Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W.,
Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J.,
Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P.,
Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S.,
Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V.,
Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C.,
Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E.,
Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y.,
Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A.,
Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
Watanabe A., Yamada M., Yasuda M., Tabata S.;
"Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana.";
Nature 408:820-822(2000).
[2]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
The Arabidopsis Information Portal (Araport);
Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
Kim C.J., Bautista V.R., Chen H., De Los Reyes C., Wu S.Y.,
Ecker J.R.;
"Arabidopsis ORF clones.";
Submitted (JAN-2007) to the EMBL/GenBank/DDBJ databases.
[4]
ALTERNATIVE SPLICING, AND INDUCTION.
PubMed=17319848; DOI=10.1111/j.1365-313X.2006.03020.x;
Palusa S.G., Ali G.S., Reddy A.S.;
"Alternative splicing of pre-mRNAs of Arabidopsis serine/arginine-rich
proteins: regulation by hormones and stresses.";
Plant J. 49:1091-1107(2007).
[5]
GENE FAMILY, AND NOMENCLATURE.
PubMed=20884799; DOI=10.1105/tpc.110.078352;
Barta A., Kalyna M., Reddy A.S.;
"Implementing a rational and consistent nomenclature for
serine/arginine-rich protein splicing factors (SR proteins) in
plants.";
Plant Cell 22:2926-2929(2010).
[6]
GENE FAMILY.
PubMed=21935421; DOI=10.1371/journal.pone.0024542;
Richardson D.N., Rogers M.F., Labadorf A., Ben-Hur A., Guo H.,
Paterson A.H., Reddy A.S.N.;
"Comparative analysis of serine/arginine-rich proteins across 27
eukaryotes: insights into sub-family classification and extent of
alternative splicing.";
PLoS ONE 6:E24542-E24542(2011).
-!- FUNCTION: Probably involved in intron recognition and spliceosome
assembly.
-!- SUBUNIT: Component of the spliceosome.
-!- SUBCELLULAR LOCATION: Nucleus speckle
{ECO:0000250|UniProtKB:O22315}. Nucleus, nucleoplasm
{ECO:0000250|UniProtKB:O22315}.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=2;
Name=1;
IsoId=A2RVS6-1; Sequence=Displayed;
Name=2;
IsoId=A2RVS6-2; Sequence=VSP_054990;
Note=No experimental confirmation available. Derived from EST
data.;
-!- MISCELLANEOUS: The splicing pattern of the pre-mRNA is regulated
in a tissue-specific manner and by development, and changes in
response to various types of abiotic stresses and hormones.
{ECO:0000305|PubMed:17319848}.
-!- SIMILARITY: Belongs to the splicing factor SR family. SR
subfamily. {ECO:0000305}.
-!- SEQUENCE CAUTION:
Sequence=AAG52185.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
Sequence=CAB62448.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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EMBL; AC012329; AAG52185.1; ALT_SEQ; Genomic_DNA.
EMBL; AL132964; CAB62448.1; ALT_SEQ; Genomic_DNA.
EMBL; CP002686; AEE78541.1; -; Genomic_DNA.
EMBL; CP002686; AEE78542.1; -; Genomic_DNA.
EMBL; CP002686; AEE78543.1; -; Genomic_DNA.
EMBL; CP002686; ANM63803.1; -; Genomic_DNA.
EMBL; CP002686; ANM63804.1; -; Genomic_DNA.
EMBL; CP002686; ANM63805.1; -; Genomic_DNA.
EMBL; CP002686; ANM63806.1; -; Genomic_DNA.
EMBL; BT030067; ABN04805.1; -; mRNA.
PIR; T46221; T46221.
RefSeq; NP_001078264.1; NM_001084795.1. [A2RVS6-2]
RefSeq; NP_001190041.1; NM_001203112.1. [A2RVS6-1]
RefSeq; NP_001325874.1; NM_001339418.1. [A2RVS6-1]
RefSeq; NP_001325875.1; NM_001339417.1. [A2RVS6-1]
RefSeq; NP_001325876.1; NM_001339419.1. [A2RVS6-1]
RefSeq; NP_001325877.1; NM_001339420.1. [A2RVS6-1]
RefSeq; NP_190512.3; NM_114803.6. [A2RVS6-1]
UniGene; At.35607; -.
ProteinModelPortal; A2RVS6; -.
SMR; A2RVS6; -.
BioGrid; 9423; 3.
IntAct; A2RVS6; 1.
STRING; 3702.AT3G49430.1; -.
iPTMnet; A2RVS6; -.
PaxDb; A2RVS6; -.
PRIDE; A2RVS6; -.
EnsemblPlants; AT3G49430.1; AT3G49430.1; AT3G49430. [A2RVS6-1]
EnsemblPlants; AT3G49430.2; AT3G49430.2; AT3G49430. [A2RVS6-2]
EnsemblPlants; AT3G49430.3; AT3G49430.3; AT3G49430. [A2RVS6-1]
EnsemblPlants; AT3G49430.4; AT3G49430.4; AT3G49430. [A2RVS6-1]
EnsemblPlants; AT3G49430.5; AT3G49430.5; AT3G49430. [A2RVS6-1]
EnsemblPlants; AT3G49430.6; AT3G49430.6; AT3G49430. [A2RVS6-1]
EnsemblPlants; AT3G49430.7; AT3G49430.7; AT3G49430. [A2RVS6-1]
GeneID; 824105; -.
Gramene; AT3G49430.1; AT3G49430.1; AT3G49430.
Gramene; AT3G49430.2; AT3G49430.2; AT3G49430.
Gramene; AT3G49430.3; AT3G49430.3; AT3G49430.
Gramene; AT3G49430.4; AT3G49430.4; AT3G49430.
Gramene; AT3G49430.5; AT3G49430.5; AT3G49430.
Gramene; AT3G49430.6; AT3G49430.6; AT3G49430.
Gramene; AT3G49430.7; AT3G49430.7; AT3G49430.
KEGG; ath:AT3G49430; -.
Araport; AT3G49430; -.
TAIR; locus:2114643; AT3G49430.
eggNOG; KOG0105; Eukaryota.
eggNOG; COG0724; LUCA.
HOGENOM; HOG000276234; -.
InParanoid; A2RVS6; -.
KO; K12890; -.
OMA; SHEECET; -.
OrthoDB; EOG09360OW1; -.
PhylomeDB; A2RVS6; -.
Reactome; R-ATH-72163; mRNA Splicing - Major Pathway.
Reactome; R-ATH-72165; mRNA Splicing - Minor Pathway.
PRO; PR:A2RVS6; -.
Proteomes; UP000006548; Chromosome 3.
Genevisible; A2RVS6; AT.
GO; GO:0005829; C:cytosol; IDA:TAIR.
GO; GO:0016607; C:nuclear speck; IEA:UniProtKB-SubCell.
GO; GO:0005730; C:nucleolus; IDA:TAIR.
GO; GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
GO; GO:0003729; F:mRNA binding; IDA:TAIR.
GO; GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
GO; GO:0008380; P:RNA splicing; NAS:TAIR.
InterPro; IPR035979; RBD_domain_sf.
InterPro; IPR000504; RRM_dom.
Pfam; PF00076; RRM_1; 2.
SMART; SM00360; RRM; 2.
SUPFAM; SSF54928; SSF54928; 2.
PROSITE; PS50102; RRM; 2.
2: Evidence at transcript level;
Alternative splicing; Complete proteome; mRNA processing;
mRNA splicing; Nucleus; Phosphoprotein; Reference proteome; Repeat;
RNA-binding; Spliceosome.
CHAIN 1 300 Serine/arginine-rich splicing factor
SR34A.
/FTId=PRO_0000429596.
DOMAIN 7 82 RRM 1. {ECO:0000255|PROSITE-
ProRule:PRU00176}.
DOMAIN 122 200 RRM 2. {ECO:0000255|PROSITE-
ProRule:PRU00176}.
COMPBIAS 82 115 Gly-rich.
COMPBIAS 185 291 Arg/Ser-rich (RS domain).
MOD_RES 207 207 Phosphoserine.
{ECO:0000250|UniProtKB:P92964}.
MOD_RES 209 209 Phosphoserine.
{ECO:0000250|UniProtKB:P92964}.
MOD_RES 231 231 Phosphoserine.
{ECO:0000250|UniProtKB:P92964}.
MOD_RES 233 233 Phosphoserine.
{ECO:0000250|UniProtKB:Q9FYB7}.
MOD_RES 239 239 Phosphoserine.
{ECO:0000250|UniProtKB:P92966}.
MOD_RES 259 259 Phosphoserine.
{ECO:0000250|UniProtKB:Q9SJA6}.
MOD_RES 275 275 Phosphoserine.
{ECO:0000250|UniProtKB:P92965}.
MOD_RES 285 285 Phosphoserine.
{ECO:0000250|UniProtKB:Q9FYB7}.
VAR_SEQ 273 300 AMSRSKSRSRSRSRSPSKSPPKVREGSV -> QVFCPSFVF
FLSTIMILLFVLLFLL (in isoform 2).
{ECO:0000305}.
/FTId=VSP_054990.
SEQUENCE 300 AA; 33599 MW; 38AE7C228F825776 CRC64;
MSGRFSRSIY VGNLPGDIRE HEIEDIFYKY GRIVDIELKV PPRPPCYCFV EFEHSRDAED
AIKGRDGYNL DGCRLRVELA HGGRGQSSSD RRGGYGGGGS GYGGGGGGGG SARFGVSRHS
EFRVIVRGLP SSASWQDLKD HMRKAGDVCF AEVTRDSDGT YGVVDYTNYD DMKYAIRKLD
DTEFRNPWAR GFIRVKKYES SRSRSRSPSR SRSRSRSRSR SRGRGRSHSR SRSLSRSKSP
RKDLSKSPRR SLSRSISKSR SPSPDKKKSP PRAMSRSKSR SRSRSRSPSK SPPKVREGSV


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