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Set3 complex subunit hif2

 HIF2_SCHPO              Reviewed;         564 AA.
O74845;
11-SEP-2007, integrated into UniProtKB/Swiss-Prot.
01-NOV-1998, sequence version 1.
07-NOV-2018, entry version 123.
RecName: Full=Set3 complex subunit hif2;
Name=hif2; ORFNames=SPCC1235.09;
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast).
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina;
Schizosaccharomycetes; Schizosaccharomycetales;
Schizosaccharomycetaceae; Schizosaccharomyces.
NCBI_TaxID=284812;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=972 / ATCC 24843;
PubMed=11859360; DOI=10.1038/nature724;
Wood V., Gwilliam R., Rajandream M.A., Lyne M.H., Lyne R., Stewart A.,
Sgouros J.G., Peat N., Hayles J., Baker S.G., Basham D., Bowman S.,
Brooks K., Brown D., Brown S., Chillingworth T., Churcher C.M.,
Collins M., Connor R., Cronin A., Davis P., Feltwell T., Fraser A.,
Gentles S., Goble A., Hamlin N., Harris D.E., Hidalgo J., Hodgson G.,
Holroyd S., Hornsby T., Howarth S., Huckle E.J., Hunt S., Jagels K.,
James K.D., Jones L., Jones M., Leather S., McDonald S., McLean J.,
Mooney P., Moule S., Mungall K.L., Murphy L.D., Niblett D., Odell C.,
Oliver K., O'Neil S., Pearson D., Quail M.A., Rabbinowitsch E.,
Rutherford K.M., Rutter S., Saunders D., Seeger K., Sharp S.,
Skelton J., Simmonds M.N., Squares R., Squares S., Stevens K.,
Taylor K., Taylor R.G., Tivey A., Walsh S.V., Warren T., Whitehead S.,
Woodward J.R., Volckaert G., Aert R., Robben J., Grymonprez B.,
Weltjens I., Vanstreels E., Rieger M., Schaefer M., Mueller-Auer S.,
Gabel C., Fuchs M., Duesterhoeft A., Fritzc C., Holzer E., Moestl D.,
Hilbert H., Borzym K., Langer I., Beck A., Lehrach H., Reinhardt R.,
Pohl T.M., Eger P., Zimmermann W., Wedler H., Wambutt R., Purnelle B.,
Goffeau A., Cadieu E., Dreano S., Gloux S., Lelaure V., Mottier S.,
Galibert F., Aves S.J., Xiang Z., Hunt C., Moore K., Hurst S.M.,
Lucas M., Rochet M., Gaillardin C., Tallada V.A., Garzon A., Thode G.,
Daga R.R., Cruzado L., Jimenez J., Sanchez M., del Rey F., Benito J.,
Dominguez A., Revuelta J.L., Moreno S., Armstrong J., Forsburg S.L.,
Cerutti L., Lowe T., McCombie W.R., Paulsen I., Potashkin J.,
Shpakovski G.V., Ussery D., Barrell B.G., Nurse P.;
"The genome sequence of Schizosaccharomyces pombe.";
Nature 415:871-880(2002).
[2]
SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
PubMed=16823372; DOI=10.1038/nbt1222;
Matsuyama A., Arai R., Yashiroda Y., Shirai A., Kamata A., Sekido S.,
Kobayashi Y., Hashimoto A., Hamamoto M., Hiraoka Y., Horinouchi S.,
Yoshida M.;
"ORFeome cloning and global analysis of protein localization in the
fission yeast Schizosaccharomyces pombe.";
Nat. Biotechnol. 24:841-847(2006).
[3]
IDENTIFICATION IN THE SET3 COMPLEX, AND IDENTIFICATION BY MASS
SPECTROMETRY.
PubMed=19040720; DOI=10.1186/gb-2008-9-11-r167;
Shevchenko A., Roguev A., Schaft D., Buchanan L., Habermann B.,
Sakalar C., Thomas H., Krogan N.J., Shevchenko A., Stewart A.F.;
"Chromatin Central: towards the comparative proteome by accurate
mapping of the yeast proteomic environment.";
Genome Biol. 9:R167.1-R167.22(2008).
[4]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-137, AND IDENTIFICATION
BY MASS SPECTROMETRY.
PubMed=18257517; DOI=10.1021/pr7006335;
Wilson-Grady J.T., Villen J., Gygi S.P.;
"Phosphoproteome analysis of fission yeast.";
J. Proteome Res. 7:1088-1097(2008).
-!- FUNCTION: Component of the set3 histone deacetylase complex which
is involved in chromatin remodeling and transcription regulation,
such as repression of the sporulation gene program.
-!- SUBUNIT: Component of the set3 histone deacetylase complex.
{ECO:0000269|PubMed:19040720}.
-!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000269|PubMed:16823372}.
Nucleus {ECO:0000269|PubMed:16823372}.
-----------------------------------------------------------------------
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EMBL; CU329672; CAA21113.1; -; Genomic_DNA.
PIR; T40883; T40883.
RefSeq; NP_587735.1; NM_001022730.2.
ProteinModelPortal; O74845; -.
BioGrid; 275286; 103.
STRING; 4896.SPCC1235.09.1; -.
iPTMnet; O74845; -.
MaxQB; O74845; -.
PaxDb; O74845; -.
PRIDE; O74845; -.
EnsemblFungi; SPCC1235.09.1; SPCC1235.09.1:pep; SPCC1235.09.
GeneID; 2538701; -.
KEGG; spo:SPCC1235.09; -.
EuPathDB; FungiDB:SPCC1235.09; -.
PomBase; SPCC1235.09; hif2.
InParanoid; O74845; -.
KO; K04508; -.
OMA; NNHAKPM; -.
OrthoDB; EOG092C2LQW; -.
PhylomeDB; O74845; -.
PRO; PR:O74845; -.
Proteomes; UP000002485; Chromosome III.
GO; GO:0005829; C:cytosol; HDA:PomBase.
GO; GO:0000118; C:histone deacetylase complex; IBA:GO_Central.
GO; GO:0005634; C:nucleus; HDA:PomBase.
GO; GO:0070210; C:Rpd3L-Expanded complex; IDA:PomBase.
GO; GO:0034967; C:Set3 complex; IDA:PomBase.
GO; GO:0003714; F:transcription corepressor activity; IBA:GO_Central.
GO; GO:0070869; P:heterochromatin assembly involved in chromatin silencing; IC:PomBase.
GO; GO:0016575; P:histone deacetylation; ISO:PomBase.
GO; GO:0000122; P:negative regulation of transcription by RNA polymerase II; ISO:PomBase.
GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
Gene3D; 2.130.10.10; -; 1.
InterPro; IPR006594; LisH.
InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
InterPro; IPR001680; WD40_repeat.
InterPro; IPR017986; WD40_repeat_dom.
InterPro; IPR036322; WD40_repeat_dom_sf.
Pfam; PF08513; LisH; 1.
Pfam; PF00400; WD40; 3.
SMART; SM00667; LisH; 1.
SMART; SM00320; WD40; 6.
SUPFAM; SSF50978; SSF50978; 1.
PROSITE; PS50896; LISH; 1.
PROSITE; PS50082; WD_REPEATS_2; 3.
PROSITE; PS50294; WD_REPEATS_REGION; 1.
1: Evidence at protein level;
Chromatin regulator; Complete proteome; Cytoplasm; Nucleus;
Phosphoprotein; Reference proteome; Repeat; Transcription;
Transcription regulation; WD repeat.
CHAIN 1 564 Set3 complex subunit hif2.
/FTId=PRO_0000303899.
DOMAIN 2 34 LisH. {ECO:0000255|PROSITE-
ProRule:PRU00126}.
REPEAT 262 302 WD 1.
REPEAT 303 342 WD 2.
REPEAT 344 382 WD 3.
REPEAT 386 425 WD 4.
REPEAT 430 470 WD 5.
REPEAT 473 512 WD 6.
MOD_RES 137 137 Phosphoserine.
{ECO:0000269|PubMed:18257517}.
SEQUENCE 564 AA; 62758 MW; 11C836D2C295B389 CRC64;
MDTNQVNYII WRYLKECGYS HTKFAFERET GIQNLDKQWG STCQVGALVE ILQKGLQYVE
LEKHYVDNHS SNEEASKTSI DGESLVNENP CKLPFYLTVP HICETTLTKA DSTNGFCEHN
NSNDHQLKIL QDKGSGSPSS PVMPFKDKIE KRDIDITMAD ESNVEKDPAR PIAVYNSSPV
TEITEIKQVT FTGGEDIKSD FFKVIPTKHP VTCADWRPLL QENYHVYEFS IGMTNATLAS
VSICEEQNDF KAKTDYCLQS SFDNQDITGV AWNNSGSFLA YAFFSGVIEI YDSHGSQILS
FHNNKGPVLS LKWSGTDTYL AAGSADGTIT LFDQLKQTQY SIDTLASSVL DIEWISFDEF
VTSDVEGSLR VYKVDGKAPV STVSHAHDNS IVALRYNLRI SLLLTASSDT TVKLWSRGDA
GAFECLHVFS FSSPVNCIDW NLREGTPILA VASNSIVSMY NAISLQQLAV FMRHTAPVSA
LSFSHNGRYL ATGDTSGGVC IWSCKTAKLF KELGSDNSEL IAVTNVLPEE QVNFLRWSFD
DKDLLIGKQK KEIICCCDFL HDSL


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