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Short transient receptor potential channel 5 (Transient receptor potential cation channel subfamily C member 5)

 F7CXM3_MACMU            Unreviewed;       974 AA.
F7CXM3;
27-JUL-2011, integrated into UniProtKB/TrEMBL.
27-JUL-2011, sequence version 1.
25-OCT-2017, entry version 47.
SubName: Full=Short transient receptor potential channel 5 {ECO:0000313|EMBL:EHH31005.1};
SubName: Full=Transient receptor potential cation channel subfamily C member 5 {ECO:0000313|Ensembl:ENSMMUP00000013668};
Name=TRPC5 {ECO:0000313|Ensembl:ENSMMUP00000013668};
ORFNames=EGK_20835 {ECO:0000313|EMBL:EHH31005.1};
Macaca mulatta (Rhesus macaque).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Cercopithecidae; Cercopithecinae; Macaca.
NCBI_TaxID=9544 {ECO:0000313|Ensembl:ENSMMUP00000013668, ECO:0000313|Proteomes:UP000006718};
[1] {ECO:0000313|Ensembl:ENSMMUP00000013668, ECO:0000313|Proteomes:UP000006718}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=17573 {ECO:0000313|Ensembl:ENSMMUP00000013668,
ECO:0000313|Proteomes:UP000006718};
PubMed=17431167; DOI=10.1126/science.1139247;
Gibbs R.A., Rogers J., Katze M.G., Bumgarner R., Weinstock G.M.,
Mardis E.R., Remington K.A., Strausberg R.L., Venter J.C.,
Wilson R.K., Batzer M.A., Bustamante C.D., Eichler E.E., Hahn M.W.,
Hardison R.C., Makova K.D., Miller W., Milosavljevic A., Palermo R.E.,
Siepel A., Sikela J.M., Attaway T., Bell S., Bernard K.E., Buhay C.J.,
Chandrabose M.N., Dao M., Davis C., Delehaunty K.D., Ding Y.,
Dinh H.H., Dugan-Rocha S., Fulton L.A., Gabisi R.A., Garner T.T.,
Godfrey J., Hawes A.C., Hernandez J., Hines S., Holder M., Hume J.,
Jhangiani S.N., Joshi V., Khan Z.M., Kirkness E.F., Cree A.,
Fowler R.G., Lee S., Lewis L.R., Li Z., Liu Y.-S., Moore S.M.,
Muzny D., Nazareth L.V., Ngo D.N., Okwuonu G.O., Pai G., Parker D.,
Paul H.A., Pfannkoch C., Pohl C.S., Rogers Y.-H.C., Ruiz S.J.,
Sabo A., Santibanez J., Schneider B.W., Smith S.M., Sodergren E.,
Svatek A.F., Utterback T.R., Vattathil S., Warren W., White C.S.,
Chinwalla A.T., Feng Y., Halpern A.L., Hillier L.W., Huang X.,
Minx P., Nelson J.O., Pepin K.H., Qin X., Sutton G.G., Venter E.,
Walenz B.P., Wallis J.W., Worley K.C., Yang S.-P., Jones S.M.,
Marra M.A., Rocchi M., Schein J.E., Baertsch R., Clarke L., Csuros M.,
Glasscock J., Harris R.A., Havlak P., Jackson A.R., Jiang H., Liu Y.,
Messina D.N., Shen Y., Song H.X.-Z., Wylie T., Zhang L., Birney E.,
Han K., Konkel M.K., Lee J., Smit A.F.A., Ullmer B., Wang H., Xing J.,
Burhans R., Cheng Z., Karro J.E., Ma J., Raney B., She X., Cox M.J.,
Demuth J.P., Dumas L.J., Han S.-G., Hopkins J., Karimpour-Fard A.,
Kim Y.H., Pollack J.R., Vinar T., Addo-Quaye C., Degenhardt J.,
Denby A., Hubisz M.J., Indap A., Kosiol C., Lahn B.T., Lawson H.A.,
Marklein A., Nielsen R., Vallender E.J., Clark A.G., Ferguson B.,
Hernandez R.D., Hirani K., Kehrer-Sawatzki H., Kolb J., Patil S.,
Pu L.-L., Ren Y., Smith D.G., Wheeler D.A., Schenck I., Ball E.V.,
Chen R., Cooper D.N., Giardine B., Hsu F., Kent W.J., Lesk A.,
Nelson D.L., O'brien W.E., Pruefer K., Stenson P.D., Wallace J.C.,
Ke H., Liu X.-M., Wang P., Xiang A.P., Yang F., Barber G.P.,
Haussler D., Karolchik D., Kern A.D., Kuhn R.M., Smith K.E.,
Zwieg A.S.;
"Evolutionary and biomedical insights from the rhesus macaque
genome.";
Science 316:222-234(2007).
[2] {ECO:0000313|EMBL:EHH31005.1}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=CR-5 {ECO:0000313|EMBL:EHH31005.1};
PubMed=22002653; DOI=10.1038/nbt.1992;
Yan G., Zhang G., Fang X., Zhang Y., Li C., Ling F., Cooper D.N.,
Li Q., Li Y., van Gool A.J., Du H., Chen J., Chen R., Zhang P.,
Huang Z., Thompson J.R., Meng Y., Bai Y., Wang J., Zhuo M., Wang T.,
Huang Y., Wei L., Li J., Wang Z., Hu H., Yang P., Le L., Stenson P.D.,
Li B., Liu X., Ball E.V., An N., Huang Q., Zhang Y., Fan W., Zhang X.,
Li Y., Wang W., Katze M.G., Su B., Nielsen R., Yang H., Wang J.,
Wang X., Wang J.;
"Genome sequencing and comparison of two nonhuman primate animal
models, the cynomolgus and Chinese rhesus macaques.";
Nat. Biotechnol. 29:1019-1023(2011).
[3] {ECO:0000313|Ensembl:ENSMMUP00000013668}
IDENTIFICATION.
STRAIN=17573 {ECO:0000313|Ensembl:ENSMMUP00000013668};
Ensembl;
Submitted (JUL-2011) to UniProtKB.
-!- SIMILARITY: Belongs to the transient receptor (TC 1.A.4) family.
{ECO:0000256|SAAS:SAAS00933551}.
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EMBL; JSUE03046498; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; JSUE03046499; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; JSUE03046500; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; CM001273; EHH31005.1; -; Genomic_DNA.
RefSeq; XP_001101078.1; XM_001101078.2.
UniGene; Mmu.24939; -.
STRING; 9544.ENSMMUP00000013668; -.
Ensembl; ENSMMUT00000014588; ENSMMUP00000013668; ENSMMUG00000010424.
GeneID; 707171; -.
KEGG; mcc:707171; -.
CTD; 7224; -.
eggNOG; KOG3609; Eukaryota.
eggNOG; ENOG410XQ0Y; LUCA.
GeneTree; ENSGT00760000119180; -.
KO; K04968; -.
OMA; GFNEYVH; -.
OrthoDB; EOG091G029I; -.
TreeFam; TF313147; -.
Proteomes; UP000006718; Chromosome X.
Bgee; ENSMMUG00000010424; -.
GO; GO:0034704; C:calcium channel complex; IEA:Ensembl.
GO; GO:0005887; C:integral component of plasma membrane; IBA:GO_Central.
GO; GO:0070679; F:inositol 1,4,5 trisphosphate binding; IEA:Ensembl.
GO; GO:0015279; F:store-operated calcium channel activity; IBA:GO_Central.
GO; GO:0006828; P:manganese ion transport; IBA:GO_Central.
GO; GO:0051480; P:regulation of cytosolic calcium ion concentration; IBA:GO_Central.
CDD; cd00204; ANK; 1.
Gene3D; 1.25.40.20; -; 1.
InterPro; IPR002110; Ankyrin_rpt.
InterPro; IPR020683; Ankyrin_rpt-contain_dom.
InterPro; IPR036770; Ankyrin_rpt-contain_sf.
InterPro; IPR005821; Ion_trans_dom.
InterPro; IPR004729; TRP_channel.
InterPro; IPR013555; TRP_dom.
InterPro; IPR005461; TRPC5_channel.
InterPro; IPR002153; TRPC_channel.
PANTHER; PTHR10117; PTHR10117; 1.
PANTHER; PTHR10117:SF24; PTHR10117:SF24; 1.
Pfam; PF12796; Ank_2; 1.
Pfam; PF00520; Ion_trans; 1.
Pfam; PF08344; TRP_2; 1.
PRINTS; PR01097; TRNSRECEPTRP.
PRINTS; PR01646; TRPCHANNEL5.
SMART; SM00248; ANK; 2.
SUPFAM; SSF48403; SSF48403; 1.
TIGRFAMs; TIGR00870; trp; 1.
3: Inferred from homology;
ANK repeat {ECO:0000256|SAAS:SAAS00933366};
Complete proteome {ECO:0000313|Proteomes:UP000006718};
Ion channel {ECO:0000256|SAAS:SAAS00931870};
Ion transport {ECO:0000256|SAAS:SAAS00931870};
Membrane {ECO:0000256|SAM:Phobius};
Receptor {ECO:0000313|EMBL:EHH31005.1};
Reference proteome {ECO:0000313|Proteomes:UP000006718};
Repeat {ECO:0000256|SAAS:SAAS00931009};
Transmembrane {ECO:0000256|SAM:Phobius};
Transmembrane helix {ECO:0000256|SAM:Phobius};
Transport {ECO:0000256|SAAS:SAAS00931870}.
TRANSMEM 327 351 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 363 382 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 402 419 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 440 460 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 480 499 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 520 542 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 599 621 Helical. {ECO:0000256|SAM:Phobius}.
DOMAIN 38 118 ANK_REP_REGION.
{ECO:0000259|Pfam:PF12796}.
DOMAIN 176 238 TRP_2. {ECO:0000259|Pfam:PF08344}.
DOMAIN 376 635 Ion_trans. {ECO:0000259|Pfam:PF00520}.
SEQUENCE 974 AA; 111502 MW; 00A904F624AA4947 CRC64;
MAQLYYKKVN YSPYRDRIPL QIVRAETELS AEEKAFLNAV EKGDYATVKQ ALQEAEIYYN
VNINCMDPLG RSALLIAIEN ENLEIMELLL NHSVYVGDAL LYAIRKEVVG AVELLLSYRR
PSGEKQVPTL MMDTQFSEFT PDITPIMLAA HTNNYEIIKL LVQKRVTIPR PHQIRCNCVE
CVSSSEVDSL RHSRSRLNIY KALASPSLIA LSSEDPILTA FRLGWELKEL SKVENEFKAE
YEELSQQCKL FAKDLLDQAR SSRELEIILN HRDDHSEELD PQKYHDLAKL KVAIKYHQKE
FVAQPNCQQL LATLWYDGFP GWRRKHWVVK LLTCMTIGFL FPMLSIAYLI SPRSNLGLFI
KKPFIKFICH TASYLTFLFM LLLASQHIVR TDLHVQGPPP TVVEWMILPW VLGFIWGEIK
EMWDGGFTEY IHDWWNLMDF AMNSLYLATI SLKIVAYVKY NGSRPREEWE MWHPTLIAEA
LFAISNILSS LRLISLFTAN SHLGPLQISL GRMLLDILKF LFIYCLVLLA FANGLNQLYF
YYETRAIDEP NNCKGIRCEK QNNAFSTLFE TLQSLFWSVF GLLNLYVTNV KARHEFTEFV
GATMFGTYNV ISLVVLLNML IAMMNNSYQL IADHADIEWK FARTKLWMSY FDEGGTLPPP
FNIIPSPKSF LYLGNWFNNT FCPKRDPDGR RRRRNLRSFT ERNADSLIQN QHYQEVIRNL
VKRYVAAMIR NSKTNEGLTE ENFKELKQDI SSFRYEVLDL LGNRKHPRRS FSTSSTELSQ
RDDTNDGSGG ARAKSKSVSF NLGCKKKACH GPPLIRTMPR SSGAQGKSKA ESSSKRSFMG
PSLKKLGLLF SKFNGHMSEP SSEPMYTISD GIVQQHCMWQ DIRYSQMEKG KAEACSQSEI
NLSEVELGEV QGAAQSSECP LACSSSLHCA SSICSSNSKL LDSSEDVFET WGEACDLLMH
KWGDGQEEQV TTRL


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