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Sodium channel protein type 11 subunit alpha (NaN) (Sensory neuron sodium channel 2) (Sodium channel protein type XI subunit alpha) (Voltage-gated sodium channel subunit alpha Nav1.9)

 SCNBA_RAT               Reviewed;        1765 AA.
O88457;
21-DEC-2004, integrated into UniProtKB/Swiss-Prot.
01-NOV-1998, sequence version 1.
31-JAN-2018, entry version 115.
RecName: Full=Sodium channel protein type 11 subunit alpha;
AltName: Full=NaN;
AltName: Full=Sensory neuron sodium channel 2;
AltName: Full=Sodium channel protein type XI subunit alpha;
AltName: Full=Voltage-gated sodium channel subunit alpha Nav1.9;
Name=Scn11a; Synonyms=Nan, Sns2;
Rattus norvegicus (Rat).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
NCBI_TaxID=10116;
[1]
NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY, AND INDUCTION.
STRAIN=Sprague-Dawley; TISSUE=Spinal ganglion;
PubMed=9671787; DOI=10.1073/pnas.95.15.8963;
Dib-Hajj S.D., Tyrrell L., Black J.A., Waxman S.G.;
"NaN, a novel voltage-gated Na channel, is expressed preferentially in
peripheral sensory neurons and down-regulated after axotomy.";
Proc. Natl. Acad. Sci. U.S.A. 95:8963-8968(1998).
[2]
NUCLEOTIDE SEQUENCE [MRNA], FUNCTION IN VOLTAGE-EVOKED DEPOLARIZATION,
TISSUE SPECIFICITY, AND INDUCTION.
STRAIN=Sprague-Dawley; TISSUE=Spinal ganglion;
PubMed=10196578; DOI=10.1038/3652;
Tate S.N., Benn S.C., Hick C.A., Trezise D., John V.H., Mannion R.J.,
Costigan M., Plumpton C., Grose D., Gladwell Z., Kendall G., Dale K.,
Bountra C., Woolf C.J.;
"Two sodium channels contribute to the TTX-R sodium current in primary
sensory neurons.";
Nat. Neurosci. 1:653-655(1998).
[3]
TISSUE SPECIFICITY, AND DEVELOPMENTAL STAGE.
PubMed=11487631;
Benn S.C., Costigan M., Tate S., Fitzgerald M., Woolf C.J.;
"Developmental expression of the TTX-resistant voltage-gated sodium
channels Nav1.8 (SNS) and Nav1.9 (SNS2) in primary sensory neurons.";
J. Neurosci. 21:6077-6085(2001).
[4]
REVIEW.
PubMed=12536125; DOI=10.1016/S0166-2236(02)00030-9;
Delmas P., Coste B.;
"Na+ channel Nav1.9: in search of a gating mechanism.";
Trends Neurosci. 26:55-57(2003).
-!- FUNCTION: This protein mediates the voltage-dependent sodium ion
permeability of excitable membranes. Assuming opened or closed
conformations in response to the voltage difference across the
membrane, the protein forms a sodium-selective channel through
which sodium ions may pass in accordance with their
electrochemical gradient. It is a tetrodotoxin-resistant sodium
channel isoform. Also involved, with the contribution of the
receptor tyrosine kinase NTRK2, in rapid BDNF-evoked neuronal
depolarization (By similarity). {ECO:0000250,
ECO:0000269|PubMed:10196578}.
-!- SUBUNIT: The voltage-resistant sodium channel consists of an ion
conducting pore forming alpha-subunit regulated by one or more
auxiliary subunits SCN1B, SCN2B and SCN3B.
-!- SUBCELLULAR LOCATION: Cell membrane
{ECO:0000250|UniProtKB:D0E0C2}; Multi-pass membrane protein
{ECO:0000250|UniProtKB:D0E0C2}.
-!- TISSUE SPECIFICITY: Expressed (at protein level) in myenteric
sensory neurons. Expressed in small sensory neurons of the dorsal
root ganglia (C-fiber neurons) and trigeminal ganglia.
{ECO:0000269|PubMed:10196578, ECO:0000269|PubMed:11487631,
ECO:0000269|PubMed:9671787}.
-!- DEVELOPMENTAL STAGE: Expressed in dorsal root ganglia at 17 dpc
onwards. {ECO:0000269|PubMed:11487631}.
-!- INDUCTION: Down-regulated after axotomy and up-regulated following
hind paw inflammation. Down-regulated in vitro by electrical
stimulation and by deprivation of NGF.
{ECO:0000269|PubMed:10196578, ECO:0000269|PubMed:9671787}.
-!- DOMAIN: The sequence contains 4 internal repeats, each with 5
hydrophobic segments (S1, S2, S3, S5, S6) and one positively
charged segment (S4). Segments S4 are probably the voltage-sensors
and are characterized by a series of positively charged amino
acids at every third position. {ECO:0000305}.
-!- SIMILARITY: Belongs to the sodium channel (TC 1.A.1.10) family.
Nav1.9/SCN11A subfamily. {ECO:0000305}.
-----------------------------------------------------------------------
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Distributed under the Creative Commons Attribution-NoDerivs License
-----------------------------------------------------------------------
EMBL; AF059030; AAC40199.1; -; mRNA.
EMBL; AJ237852; CAB41850.1; -; mRNA.
PIR; T42388; T42388.
RefSeq; NP_062138.1; NM_019265.2.
UniGene; Rn.30023; -.
ProteinModelPortal; O88457; -.
CORUM; O88457; -.
STRING; 10116.ENSRNOP00000033224; -.
GuidetoPHARMACOLOGY; 586; -.
iPTMnet; O88457; -.
PhosphoSitePlus; O88457; -.
PaxDb; O88457; -.
PRIDE; O88457; -.
GeneID; 29701; -.
KEGG; rno:29701; -.
UCSC; RGD:3630; rat.
CTD; 11280; -.
RGD; 3630; Scn11a.
eggNOG; ENOG410KCTY; Eukaryota.
eggNOG; COG1226; LUCA.
HOGENOM; HOG000231755; -.
HOVERGEN; HBG053100; -.
InParanoid; O88457; -.
KO; K04843; -.
PhylomeDB; O88457; -.
PRO; PR:O88457; -.
Proteomes; UP000002494; Unplaced.
GO; GO:0030424; C:axon; ISO:RGD.
GO; GO:0044299; C:C-fiber; ISO:RGD.
GO; GO:0070062; C:extracellular exosome; ISO:RGD.
GO; GO:0005886; C:plasma membrane; ISO:RGD.
GO; GO:0001518; C:voltage-gated sodium channel complex; IEA:InterPro.
GO; GO:0005244; F:voltage-gated ion channel activity; IEA:UniProtKB-KW.
GO; GO:0005248; F:voltage-gated sodium channel activity; ISO:RGD.
GO; GO:0086010; P:membrane depolarization during action potential; IBA:GO_Central.
GO; GO:0019228; P:neuronal action potential; IBA:GO_Central.
GO; GO:0034765; P:regulation of ion transmembrane transport; IEA:UniProtKB-KW.
GO; GO:0051930; P:regulation of sensory perception of pain; ISS:UniProtKB.
GO; GO:0006814; P:sodium ion transport; ISO:RGD.
InterPro; IPR005821; Ion_trans_dom.
InterPro; IPR028821; Na_channel_a11su.
InterPro; IPR001696; Na_channel_asu.
InterPro; IPR010526; Na_trans_assoc.
PANTHER; PTHR10037:SF210; PTHR10037:SF210; 1.
Pfam; PF00520; Ion_trans; 4.
Pfam; PF06512; Na_trans_assoc; 1.
PRINTS; PR00170; NACHANNEL.
1: Evidence at protein level;
Cell membrane; Complete proteome; Disulfide bond; Glycoprotein;
Ion channel; Ion transport; Membrane; Reference proteome; Repeat;
Sodium; Sodium channel; Sodium transport; Transmembrane;
Transmembrane helix; Transport; Voltage-gated channel.
CHAIN 1 1765 Sodium channel protein type 11 subunit
alpha.
/FTId=PRO_0000048512.
TOPO_DOM 1 126 Cytoplasmic. {ECO:0000305}.
TRANSMEM 127 148 Helical; Name=S1 of repeat I.
{ECO:0000250}.
TOPO_DOM 149 157 Extracellular. {ECO:0000305}.
TRANSMEM 158 177 Helical; Name=S2 of repeat I.
{ECO:0000250}.
TOPO_DOM 178 189 Cytoplasmic. {ECO:0000305}.
TRANSMEM 190 209 Helical; Name=S3 of repeat I.
{ECO:0000250}.
TOPO_DOM 210 216 Extracellular. {ECO:0000305}.
TRANSMEM 217 236 Helical; Voltage-sensor; Name=S4 of
repeat I. {ECO:0000250}.
TOPO_DOM 237 252 Cytoplasmic. {ECO:0000305}.
TRANSMEM 253 266 Helical; Name=S5 of repeat I.
{ECO:0000250}.
TOPO_DOM 267 339 Extracellular. {ECO:0000305}.
INTRAMEM 340 364 Pore-forming.
{ECO:0000250|UniProtKB:D0E0C2}.
TOPO_DOM 365 371 Extracellular. {ECO:0000305}.
TRANSMEM 372 397 Helical; Name=S6 of repeat I.
{ECO:0000250}.
TOPO_DOM 398 567 Cytoplasmic. {ECO:0000305}.
TRANSMEM 568 591 Helical; Name=S1 of repeat II.
{ECO:0000250}.
TOPO_DOM 592 602 Extracellular. {ECO:0000305}.
TRANSMEM 603 626 Helical; Name=S2 of repeat II.
{ECO:0000250}.
TOPO_DOM 627 634 Cytoplasmic. {ECO:0000305}.
TRANSMEM 635 656 Helical; Name=S3 of repeat II.
{ECO:0000250}.
TOPO_DOM 657 662 Extracellular. {ECO:0000305}.
TRANSMEM 663 682 Helical; Voltage-sensor; Name=S4 of
repeat II. {ECO:0000250}.
TOPO_DOM 683 697 Cytoplasmic. {ECO:0000305}.
TRANSMEM 698 720 Helical; Name=S5 of repeat II.
{ECO:0000250}.
TOPO_DOM 721 741 Extracellular. {ECO:0000305}.
INTRAMEM 742 762 Pore-forming.
{ECO:0000250|UniProtKB:D0E0C2}.
TOPO_DOM 763 772 Extracellular. {ECO:0000305}.
TRANSMEM 773 798 Helical; Name=S6 of repeat II.
{ECO:0000250}.
TOPO_DOM 799 1029 Cytoplasmic. {ECO:0000305}.
TRANSMEM 1030 1052 Helical; Name=S1 of repeat III.
{ECO:0000250}.
TOPO_DOM 1053 1066 Extracellular. {ECO:0000305}.
TRANSMEM 1067 1092 Helical; Name=S2 of repeat III.
{ECO:0000250}.
TOPO_DOM 1093 1098 Cytoplasmic. {ECO:0000305}.
TRANSMEM 1099 1116 Helical; Name=S3 of repeat III.
{ECO:0000250}.
TOPO_DOM 1117 1117 Extracellular. {ECO:0000305}.
TRANSMEM 1118 1139 Helical; Voltage-sensor; Name=S4 of
repeat III. {ECO:0000250}.
TOPO_DOM 1140 1158 Cytoplasmic. {ECO:0000305}.
TRANSMEM 1159 1180 Helical; Name=S5 of repeat III.
{ECO:0000250}.
TOPO_DOM 1181 1223 Extracellular. {ECO:0000305}.
INTRAMEM 1224 1245 Pore-forming.
{ECO:0000250|UniProtKB:D0E0C2}.
TOPO_DOM 1246 1261 Extracellular. {ECO:0000305}.
TRANSMEM 1262 1288 Helical; Name=S6 of repeat III.
{ECO:0000250}.
TOPO_DOM 1289 1341 Cytoplasmic. {ECO:0000305}.
TRANSMEM 1342 1365 Helical; Name=S1 of repeat IV.
{ECO:0000250}.
TOPO_DOM 1366 1376 Extracellular. {ECO:0000305}.
TRANSMEM 1377 1400 Helical; Name=S2 of repeat IV.
{ECO:0000250}.
TOPO_DOM 1401 1406 Cytoplasmic. {ECO:0000305}.
TRANSMEM 1407 1430 Helical; Name=S3 of repeat IV.
{ECO:0000250}.
TOPO_DOM 1431 1440 Extracellular. {ECO:0000305}.
TRANSMEM 1441 1463 Helical; Voltage-sensor; Name=S4 of
repeat IV. {ECO:0000250}.
TOPO_DOM 1464 1478 Cytoplasmic. {ECO:0000305}.
TRANSMEM 1479 1501 Helical; Name=S5 of repeat IV.
{ECO:0000250}.
TOPO_DOM 1502 1515 Extracellular. {ECO:0000305}.
INTRAMEM 1516 1538 Pore-forming.
{ECO:0000250|UniProtKB:D0E0C2}.
TOPO_DOM 1539 1559 Extracellular. {ECO:0000305}.
TRANSMEM 1560 1584 Helical; Name=S6 of repeat IV.
{ECO:0000250}.
TOPO_DOM 1585 1765 Cytoplasmic. {ECO:0000305}.
REPEAT 115 403 I. {ECO:0000305}.
REPEAT 554 820 II. {ECO:0000305}.
REPEAT 1022 1319 III. {ECO:0000305}.
REPEAT 1328 1619 IV. {ECO:0000305}.
CARBOHYD 214 214 N-linked (GlcNAc...) asparagine.
{ECO:0000255}.
CARBOHYD 319 319 N-linked (GlcNAc...) asparagine.
{ECO:0000255}.
CARBOHYD 333 333 N-linked (GlcNAc...) asparagine.
{ECO:0000255}.
CARBOHYD 660 660 N-linked (GlcNAc...) asparagine.
{ECO:0000255}.
CARBOHYD 723 723 N-linked (GlcNAc...) asparagine.
{ECO:0000255}.
CARBOHYD 1187 1187 N-linked (GlcNAc...) asparagine.
{ECO:0000255}.
CARBOHYD 1202 1202 N-linked (GlcNAc...) asparagine.
{ECO:0000255}.
CARBOHYD 1207 1207 N-linked (GlcNAc...) asparagine.
{ECO:0000255}.
CARBOHYD 1210 1210 N-linked (GlcNAc...) asparagine.
{ECO:0000255}.
CARBOHYD 1547 1547 N-linked (GlcNAc...) asparagine.
{ECO:0000255}.
DISULFID 280 317 {ECO:0000250|UniProtKB:D0E0C2}.
DISULFID 764 774 {ECO:0000250|UniProtKB:D0E0C2}.
SEQUENCE 1765 AA; 201845 MW; AE8C67397CC60BD9 CRC64;
MEERYYPVIF PDERNFRPFT SDSLAAIEKR IAIQKERKKS KDKAAAEPQP RPQLDLKASR
KLPKLYGDIP PELVAKPLED LDPFYKDHKT FMVLNKKRTI YRFSAKRALF ILGPFNPLRS
LMIRISVHSV FSMFIICTVI INCMFMANSM ERSFDNDIPE YVFIGIYILE AVIKILARGF
IVDEFSFLRD PWNWLDFIVI GTAIATCFPG SQVNLSALRT FRVFRALKAI SVISGLKVIV
GALLRSVKKL VDVMVLTLFC LSIFALVGQQ LFMGILNQKC IKHNCGPNPA SNKDCFEKEK
DSEDFIMCGT WLGSRPCPNG STCDKTTLNP DNNYTKFDNF GWSFLAMFRV MTQDSWERLY
RQILRTSGIY FVFFFVVVIF LGSFYLLNLT LAVVTMAYEE QNRNVAAETE AKEKMFQEAQ
QLLREEKEAL VAMGIDRSSL NSLQASSFSP KKRKFFGSKT RKSFFMRGSK TAQASASDSE
DDASKNPQLL EQTKRLSQNL PVDLFDEHVD PLHRQRALSA VSILTITMQE QEKFQEPCFP
CGKNLASKYL VWDCSPQWLC IKKVLRTIMT DPFTELAITI CIIINTVFLA VEHHNMDDNL
KTILKIGNWV FTGIFIAEMC LKIIALDPYH YFRHGWNVFD SIVALLSLAD VLYNTLSDNN
RSFLASLRVL RVFKLAKSWP TLNTLIKIIG HSVGALGNLT VVLTIVVFIF SVVGMRLFGT
KFNKTAYATQ ERPRRRWHMD NFYHSFLVVF RILCGEWIEN MWGCMQDMDG SPLCIIVFVL
IMVIGKLVVL NLFIALLLNS FSNEEKDGSL EGETRKTKVQ LALDRFRRAF SFMLHALQSF
CCKKCRRKNS PKPKETTESF AGENKDSILP DARPWKEYDT DMALYTGQAG APLAPLAEVE
DDVEYCGEGG ALPTSQHSAG VQAGDLPPET KQLTSPDDQG VEMEVFSEED LHLSIQSPRK
KSDAVSMLSE CSTIDLNDIF RNLQKTVSPK KQPDRCFPKG LSCHFLCHKT DKRKSPWVLW
WNIRKTCYQI VKHSWFESFI IFVILLSSGA LIFEDVNLPS RPQVEKLLRC TDNIFTFIFL
LEMILKWVAF GFRRYFTSAW CWLDFLIVVV SVLSLMNLPS LKSFRTLRAL RPLRALSQFE
GMKVVVYALI SAIPAILNVL LVCLIFWLVF CILGVNLFSG KFGRCINGTD INMYLDFTEV
PNRSQCNISN YSWKVPQVNF DNVGNAYLAL LQVATYKGWL EIMNAAVDSR EKDEQPDFEA
NLYAYLYFVV FIIFGSFFTL NLFIGVIIDN FNQQQKKLGG QDIFMTEEQK KYYNAMKKLG
TKKPQKPIPR PLNKCQAFVF DLVTSQVFDV IILGLIVLNM IIMMAESADQ PKDVKKTFDI
LNIAFVVIFT IECLIKVFAL RQHYFTNGWN LFDCVVVVLS IISTLVSRLE DSDISFPPTL
FRVVRLARIG RILRLVRAAR GIRTLLFALM MSLPSLFNIG LLLFLVMFIY AIFGMSWFSK
VKKGSGIDDI FNFETFTGSM LCLFQITTSA GWDTLLNPML EAKEHCNSSS QDSCQQPQIA
VVYFVSYIII SFLIVVNMYI AVILENFNTA TEESEDPLGE DDFEIFYEVW EKFDPEASQF
IQYSALSDFA DALPEPLRVA KPNKFQFLVM DLPMVMGDRL HCMDVLFAFT TRVLGDSSGL
DTMKTMMEEK FMEANPFKKL YEPIVTTTKR KEEEQGAAVI QRAYRKHMEK MVKLRLKDRS
SSSHQVFCNG DLSSLDVAKV KVHND


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