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Spike protein (Baseplate assembly protein gpV) (Gene V protein) (GpV)

 SPIKE_BPP2              Reviewed;         211 AA.
P31340;
01-JUL-1993, integrated into UniProtKB/Swiss-Prot.
01-OCT-1996, sequence version 2.
28-FEB-2018, entry version 80.
RecName: Full=Spike protein {ECO:0000305};
AltName: Full=Baseplate assembly protein gpV {ECO:0000305};
AltName: Full=Gene V protein {ECO:0000305};
Short=GpV;
Name=V;
Escherichia phage P2 (Bacteriophage P2).
Viruses; dsDNA viruses, no RNA stage; Caudovirales; Myoviridae;
Peduovirinae; P2virus.
NCBI_TaxID=10679;
NCBI_TaxID=543; Enterobacteriaceae.
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND FUNCTION.
PubMed=7483254; DOI=10.1006/viro.1995.1551;
Haggaard-Ljungquist E., Jacobsen E., Rishovd S., Six E.W., Nilssen O.,
Sunshine M.G., Lindqvist B.H., Kim K.-J., Barreiro V., Koonin E.V.,
Calendar R.;
"Bacteriophage P2: genes involved in baseplate assembly.";
Virology 213:109-121(1995).
[2]
NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-72.
PubMed=3981640; DOI=10.1016/0022-2836(85)90226-8;
Christie G.E., Calendar R.;
"Bacteriophage P2 late promoters. II. Comparison of the four late
promoter sequences.";
J. Mol. Biol. 181:373-382(1985).
[3]
NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND SEQUENCE REVISION.
Christie G.E.;
Submitted (JAN-1997) to the EMBL/GenBank/DDBJ databases.
[4]
NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-24.
PubMed=8178426; DOI=10.1006/viro.1994.1199;
Linderoth N.A., Julien B., Flick K.E., Calendar R., Christie G.E.;
"Molecular cloning and characterization of bacteriophage P2 genes R
and S involved in tail completion.";
Virology 200:347-359(1994).
[5] {ECO:0000244|PDB:3AQJ}
X-RAY CRYSTALLOGRAPHY (1.27 ANGSTROMS) OF 87-211, FUNCTION,
SUBCELLULAR LOCATION, COFACTOR, AND SUBUNIT.
PubMed=21821878; DOI=10.1107/S1744309111005999;
Yamashita E., Nakagawa A., Takahashi J., Tsunoda K., Yamada S.,
Takeda S.;
"The host-binding domain of the P2 phage tail spike reveals a trimeric
iron-binding structure.";
Acta Crystallogr. F 67:837-841(2011).
[6] {ECO:0000244|PDB:3QR7, ECO:0000244|PDB:3QR8}
X-RAY CRYSTALLOGRAPHY (0.94 ANGSTROMS) OF 97-211 IN COMPLEX WITH
CHLORIDE, AND COFACTOR.
PubMed=22325780; DOI=10.1016/j.str.2011.12.009;
Browning C., Shneider M.M., Bowman V.D., Schwarzer D., Leiman P.G.;
"Phage pierces the host cell membrane with the iron-loaded spike.";
Structure 20:326-339(2012).
-!- FUNCTION: Forms the small spikes on the baseplate that plug the
end of the tube before DNA ejection and form a channel perforating
the host membrane during ejection. Involved in baseplate assembly.
{ECO:0000269|PubMed:21821878, ECO:0000305|PubMed:22325780}.
-!- COFACTOR:
Name=Ca(2+); Xref=ChEBI:CHEBI:29108;
Evidence={ECO:0000269|PubMed:21821878};
Note=Binds 1 calcium ions per spike trimer.;
-!- COFACTOR:
Name=Fe cation; Xref=ChEBI:CHEBI:24875;
Evidence={ECO:0000269|PubMed:21821878,
ECO:0000269|PubMed:22325780};
Note=Binds 1 Fe cation per spike trimer.;
-!- COFACTOR:
Name=chloride; Xref=ChEBI:CHEBI:17996;
Evidence={ECO:0000269|PubMed:21821878,
ECO:0000269|PubMed:22325780};
Note=Binds 1 chloride per spike trimer.;
-!- SUBUNIT: homotrimer.
-!- SUBCELLULAR LOCATION: Virion {ECO:0000269|PubMed:21821878}.
Note=Part of the virion tail. {ECO:0000269|PubMed:21821878}.
-!- INDUCTION: Expressed in the late phase of the viral replicative
cycle. {ECO:0000305}.
-!- SIMILARITY: Belongs to the P2likevirus spike protein family.
{ECO:0000305}.
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EMBL; AF063097; AAD03282.1; -; Genomic_DNA.
RefSeq; NP_046771.1; NC_001895.1.
PDB; 3AQJ; X-ray; 1.27 A; A/B/C/P/Q/R=87-211.
PDB; 3QR7; X-ray; 0.94 A; A/B=97-211.
PDB; 3QR8; X-ray; 2.03 A; A=1-211.
PDBsum; 3AQJ; -.
PDBsum; 3QR7; -.
PDBsum; 3QR8; -.
SMR; P31340; -.
GeneID; 1261526; -.
KEGG; vg:1261526; -.
OrthoDB; VOG0900011C; -.
Proteomes; UP000009092; Genome.
GO; GO:0098025; C:virus tail, baseplate; IEA:UniProtKB-KW.
GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO; GO:0098670; P:entry receptor-mediated virion attachment to host cell; IEA:UniProtKB-KW.
GO; GO:0044694; P:pore-mediated entry of viral genome into host cell; IEA:UniProtKB-KW.
GO; GO:0098003; P:viral tail assembly; IEA:UniProtKB-KW.
Gene3D; 2.40.50.230; -; 1.
InterPro; IPR006531; Gp5_N-like_dom.
InterPro; IPR013046; GpV/Gp45.
InterPro; IPR037026; Vgr_OB-fold_dom_sf.
Pfam; PF04717; Phage_base_V; 1.
TIGRFAMs; TIGR01644; phage_P2_V; 1.
1: Evidence at protein level;
3D-structure; Complete proteome; Host-virus interaction; Late protein;
Metal-binding;
Pore-mediated penetration of viral genome into host cell;
Reference proteome; Viral attachment to host cell;
Viral attachment to host entry receptor; Viral baseplate protein;
Viral penetration into host cytoplasm; Viral release from host cell;
Viral tail assembly; Viral tail protein; Virion;
Virus entry into host cell.
CHAIN 1 211 Spike protein.
/FTId=PRO_0000165263.
METAL 197 197 Iron.
METAL 199 199 Iron.
METAL 202 202 Calcium.
METAL 203 203 Calcium.
BINDING 50 50 Chloride. {ECO:0000244|PDB:3QR8}.
HELIX 10 17 {ECO:0000244|PDB:3QR8}.
STRAND 18 27 {ECO:0000244|PDB:3QR8}.
TURN 28 31 {ECO:0000244|PDB:3QR8}.
STRAND 32 37 {ECO:0000244|PDB:3QR8}.
STRAND 45 47 {ECO:0000244|PDB:3QR8}.
STRAND 52 56 {ECO:0000244|PDB:3QR8}.
STRAND 66 71 {ECO:0000244|PDB:3QR8}.
TURN 74 76 {ECO:0000244|PDB:3QR8}.
STRAND 79 85 {ECO:0000244|PDB:3QR8}.
STRAND 88 90 {ECO:0000244|PDB:3QR8}.
STRAND 100 103 {ECO:0000244|PDB:3QR7}.
STRAND 109 113 {ECO:0000244|PDB:3QR7}.
TURN 114 117 {ECO:0000244|PDB:3QR7}.
STRAND 118 123 {ECO:0000244|PDB:3QR7}.
STRAND 140 145 {ECO:0000244|PDB:3AQJ}.
STRAND 147 172 {ECO:0000244|PDB:3AQJ}.
STRAND 174 178 {ECO:0000244|PDB:3AQJ}.
STRAND 180 185 {ECO:0000244|PDB:3AQJ}.
STRAND 187 189 {ECO:0000244|PDB:3AQJ}.
TURN 194 196 {ECO:0000244|PDB:3QR7}.
STRAND 204 206 {ECO:0000244|PDB:3QR7}.
SEQUENCE 211 AA; 22244 MW; B1CA7E47B19B91FB CRC64;
MNTLANIQEL ARALRNMIRT GIIVETDLNA GRCRVQTGGM CTDWLQWLTH RAGRSRTWWA
PSVGEQVLIL AVGGELDTAF VLPGIYSGDN PSPSVSADAL HIRFPDGAVI EYEPETSALT
VSGIKTASVT ASGSVTATVP VVMVKASTRV TLDTPEVVCT NRLITGTLEV QKGGTMRGNI
EHTGGELSSN GKVLHTHKHP GDSGGTTGSP L


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