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Stathmin-2 (Superior cervical ganglion-10 protein) (Protein SCG10)

 STMN2_HUMAN             Reviewed;         179 AA.
Q93045; A8K9M2; G3V110; O14952; Q6PK68;
01-NOV-1997, integrated into UniProtKB/Swiss-Prot.
31-AUG-2004, sequence version 3.
25-APR-2018, entry version 159.
RecName: Full=Stathmin-2;
AltName: Full=Superior cervical ganglion-10 protein;
Short=Protein SCG10;
Name=STMN2; Synonyms=SCG10, SCGN10;
Homo sapiens (Human).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
NCBI_TaxID=9606;
[1]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
PubMed=8622778; DOI=10.1016/0197-4580(95)02001-2;
Okazaki T., Wang H., Masliah E., Cao M., Johnson S.A., Sundsmo M.,
Saitoh T., Mori N.;
"SCG10, a neuron-specific growth-associated protein in Alzheimer's
disease.";
Neurobiol. Aging 16:883-894(1995).
[2]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
TISSUE=Brain;
Fujiwara T., Kawai A., Shimizu F., Shinomiya K., Hirano H., Okuno S.,
Ozaki K., Katagiri T., Takeda S., Kuga Y., Shimada Y., Nagata M.,
Takaichi A., Watanabe T., Horie M., Nakamura Y., Takahashi E.,
Hirai Y.;
"Molecular cloning of a human homologue of chicken silencer element
(SCG10) gene.";
Submitted (APR-1995) to the EMBL/GenBank/DDBJ databases.
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
Kalnine N., Chen X., Rolfs A., Halleck A., Hines L., Eisenstein S.,
Koundinya M., Raphael J., Moreira D., Kelley T., LaBaer J., Lin Y.,
Phelan M., Farmer A.;
"Cloning of human full-length CDSs in BD Creator(TM) system donor
vector.";
Submitted (MAY-2003) to the EMBL/GenBank/DDBJ databases.
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
Ebert L., Schick M., Neubert P., Schatten R., Henze S., Korn B.;
"Cloning of human full open reading frames in Gateway(TM) system entry
vector (pDONR201).";
Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases.
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
TISSUE=Kidney;
PubMed=14702039; DOI=10.1038/ng1285;
Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R.,
Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H.,
Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.,
Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K.,
Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A.,
Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M.,
Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y.,
Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M.,
Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K.,
Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S.,
Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J.,
Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y.,
Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N.,
Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S.,
Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S.,
Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O.,
Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H.,
Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B.,
Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y.,
Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T.,
Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y.,
Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S.,
Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T.,
Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M.,
Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T.,
Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K.,
Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R.,
Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.;
"Complete sequencing and characterization of 21,243 full-length human
cDNAs.";
Nat. Genet. 36:40-45(2004).
[6]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
PubMed=16421571; DOI=10.1038/nature04406;
Nusbaum C., Mikkelsen T.S., Zody M.C., Asakawa S., Taudien S.,
Garber M., Kodira C.D., Schueler M.G., Shimizu A., Whittaker C.A.,
Chang J.L., Cuomo C.A., Dewar K., FitzGerald M.G., Yang X.,
Allen N.R., Anderson S., Asakawa T., Blechschmidt K., Bloom T.,
Borowsky M.L., Butler J., Cook A., Corum B., DeArellano K.,
DeCaprio D., Dooley K.T., Dorris L. III, Engels R., Gloeckner G.,
Hafez N., Hagopian D.S., Hall J.L., Ishikawa S.K., Jaffe D.B.,
Kamat A., Kudoh J., Lehmann R., Lokitsang T., Macdonald P.,
Major J.E., Matthews C.D., Mauceli E., Menzel U., Mihalev A.H.,
Minoshima S., Murayama Y., Naylor J.W., Nicol R., Nguyen C.,
O'Leary S.B., O'Neill K., Parker S.C.J., Polley A., Raymond C.K.,
Reichwald K., Rodriguez J., Sasaki T., Schilhabel M., Siddiqui R.,
Smith C.L., Sneddon T.P., Talamas J.A., Tenzin P., Topham K.,
Venkataraman V., Wen G., Yamazaki S., Young S.K., Zeng Q.,
Zimmer A.R., Rosenthal A., Birren B.W., Platzer M., Shimizu N.,
Lander E.S.;
"DNA sequence and analysis of human chromosome 8.";
Nature 439:331-335(2006).
[7]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L.,
Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R.,
Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V.,
Hannenhalli S., Turner R., Yooseph S., Lu F., Nusskern D.R.,
Shue B.C., Zheng X.H., Zhong F., Delcher A.L., Huson D.H.,
Kravitz S.A., Mouchard L., Reinert K., Remington K.A., Clark A.G.,
Waterman M.S., Eichler E.E., Adams M.D., Hunkapiller M.W., Myers E.W.,
Venter J.C.;
Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases.
[8]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
TISSUE=Brain, and Neuroblastoma;
PubMed=15489334; DOI=10.1101/gr.2596504;
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA
project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[9]
PROTEIN SEQUENCE OF 12-43; 48-69; 78-86; 147-156 AND 172-179, AND
IDENTIFICATION BY MASS SPECTROMETRY.
TISSUE=Fetal brain cortex;
Lubec G., Chen W.-Q., Sun Y.;
Submitted (DEC-2008) to UniProtKB.
[10]
SUMOYLATION.
PubMed=15561718; DOI=10.1074/jbc.M411718200;
Gocke C.B., Yu H., Kang J.;
"Systematic identification and analysis of mammalian small ubiquitin-
like modifier substrates.";
J. Biol. Chem. 280:5004-5012(2005).
[11]
INTERACTION WITH ITM2C.
PubMed=18452648; DOI=10.5483/BMBRep.2008.41.4.287;
Gong Y., Wu J., Qiang H., Liu B., Chi Z., Chen T., Yin B., Peng X.,
Yuan J.;
"BRI3 associates with SCG10 and attenuates NGF-induced neurite
outgrowth in PC12 cells.";
BMB Rep. 41:287-293(2008).
[12]
INTERACTION WITH KIF1BP.
PubMed=20621975; DOI=10.1093/hmg/ddq280;
Alves M.M., Burzynski G., Delalande J.M., Osinga J., van der Goot A.,
Dolga A.M., de Graaff E., Brooks A.S., Metzger M., Eisel U.L.,
Shepherd I., Eggen B.J., Hofstra R.M.;
"KBP interacts with SCG10, linking Goldberg-Shprintzen syndrome to
microtubule dynamics and neuronal differentiation.";
Hum. Mol. Genet. 19:3642-3651(2010).
[13]
INTERACTION WITH CIB1, AND SUBCELLULAR LOCATION.
PubMed=21215777; DOI=10.1016/j.bbamcr.2010.12.023;
Sobczak A., Debowska K., Blazejczyk M., Kreutz M.R., Kuznicki J.,
Wojda U.;
"Calmyrin1 binds to SCG10 protein (stathmin2) to modulate neurite
outgrowth.";
Biochim. Biophys. Acta 1813:1025-1037(2011).
[14]
PALMITOYLATION AT CYS-22 AND CYS-24 BY ZDHHC3; ZDHHC7 AND ZDHHC15, AND
SUBCELLULAR LOCATION.
PubMed=21471001; DOI=10.1091/mbc.E10-10-0824;
Levy A.D., Devignot V., Fukata Y., Fukata M., Sobel A., Chauvin S.;
"Subcellular Golgi localization of stathmin family proteins is
promoted by a specific set of DHHC palmitoyl transferases.";
Mol. Biol. Cell 22:1930-1942(2011).
[15]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-62, AND IDENTIFICATION
BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
TISSUE=Liver;
PubMed=24275569; DOI=10.1016/j.jprot.2013.11.014;
Bian Y., Song C., Cheng K., Dong M., Wang F., Huang J., Sun D.,
Wang L., Ye M., Zou H.;
"An enzyme assisted RP-RPLC approach for in-depth analysis of human
liver phosphoproteome.";
J. Proteomics 96:253-262(2014).
-!- FUNCTION: Regulator of microtubule stability. When phosphorylated
by MAPK8, stabilizes microtubules and consequently controls
neurite length in cortical neurons. In the developing brain,
negatively regulates the rate of exit from multipolar stage and
retards radial migration from the ventricular zone (By
similarity). {ECO:0000250}.
-!- SUBUNIT: Interacts with MAPK8 (By similarity). Interacts with
ITM2C. Interacts with KIF1BP. Interacts (via the N-terminal
region) with CIB1 (via C-terminal region); the interaction is
direct, occurs in a calcium-dependent manner and attenuates the
neurite outgrowth inhibition of STMN2. {ECO:0000250,
ECO:0000269|PubMed:18452648, ECO:0000269|PubMed:20621975,
ECO:0000269|PubMed:21215777}.
-!- INTERACTION:
Q8IYF3:TEX11; NbExp=5; IntAct=EBI-714194, EBI-742397;
Q12800:TFCP2; NbExp=3; IntAct=EBI-714194, EBI-717422;
P40222:TXLNA; NbExp=3; IntAct=EBI-714194, EBI-359793;
-!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}. Cytoplasm,
perinuclear region {ECO:0000250}. Cell projection, growth cone.
Membrane {ECO:0000305}; Peripheral membrane protein {ECO:0000305};
Cytoplasmic side {ECO:0000305}. Cell projection, axon. Golgi
apparatus. Endosome {ECO:0000250}. Cell projection, lamellipodium.
Note=Associated with punctate structures in the perinuclear
cytoplasm, axons, and growth cones of developing neurons. SCG10
exists in both soluble and membrane-bound forms. Colocalized with
CIB1 in neurites of developing hippocampal primary neurons (By
similarity). Colocalized with CIB1 in the cell body, neuritis and
growth cones of neurons. Colocalized with CIB1 to the leading edge
of lamellipodia. {ECO:0000250}.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=2;
Name=1;
IsoId=Q93045-1; Sequence=Displayed;
Name=2;
IsoId=Q93045-2; Sequence=VSP_045047;
Note=No experimental confirmation available.;
-!- TISSUE SPECIFICITY: Neuron specific.
-!- PTM: Sumoylated. {ECO:0000269|PubMed:15561718}.
-!- PTM: Phosphorylated mostly by MAPK8, but also by MAPK9 and MAPK10
in the developing brain cortex. {ECO:0000250}.
-!- PTM: N-terminal palmitoylation promotes specific anchoring to the
cytosolic leaflet of Golgi membranes and subsequent vesicular
trafficking along dendrites and axons. Neuronal Stathmins are
substrates for palmitoyltransferases ZDHHC3, ZDHHC7 and ZDHHC15.
{ECO:0000269|PubMed:21471001}.
-!- SIMILARITY: Belongs to the stathmin family. {ECO:0000305}.
-----------------------------------------------------------------------
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EMBL; S82024; AAB36428.1; -; mRNA.
EMBL; D50375; BAA23326.1; -; mRNA.
EMBL; BT020034; AAV38837.1; -; mRNA.
EMBL; CR456833; CAG33114.1; -; mRNA.
EMBL; AK292737; BAF85426.1; -; mRNA.
EMBL; AC016240; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; AC025599; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; CH471068; EAW87064.1; -; Genomic_DNA.
EMBL; CH471068; EAW87065.1; -; Genomic_DNA.
EMBL; BC006302; AAH06302.1; -; mRNA.
EMBL; BQ069488; -; NOT_ANNOTATED_CDS; mRNA.
CCDS; CCDS43748.1; -. [Q93045-1]
CCDS; CCDS56542.1; -. [Q93045-2]
RefSeq; NP_001186143.1; NM_001199214.1. [Q93045-2]
RefSeq; NP_008960.2; NM_007029.3. [Q93045-1]
UniGene; Hs.521651; -.
ProteinModelPortal; Q93045; -.
SMR; Q93045; -.
BioGrid; 116258; 36.
IntAct; Q93045; 12.
MINT; Q93045; -.
STRING; 9606.ENSP00000429243; -.
iPTMnet; Q93045; -.
PhosphoSitePlus; Q93045; -.
BioMuta; STMN2; -.
DMDM; 51704330; -.
EPD; Q93045; -.
MaxQB; Q93045; -.
PaxDb; Q93045; -.
PeptideAtlas; Q93045; -.
PRIDE; Q93045; -.
DNASU; 11075; -.
Ensembl; ENST00000220876; ENSP00000220876; ENSG00000104435. [Q93045-1]
Ensembl; ENST00000518111; ENSP00000429243; ENSG00000104435. [Q93045-2]
GeneID; 11075; -.
KEGG; hsa:11075; -.
UCSC; uc003ybj.3; human. [Q93045-1]
CTD; 11075; -.
DisGeNET; 11075; -.
EuPathDB; HostDB:ENSG00000104435.13; -.
GeneCards; STMN2; -.
HGNC; HGNC:10577; STMN2.
HPA; HPA026922; -.
MIM; 600621; gene.
neXtProt; NX_Q93045; -.
OpenTargets; ENSG00000104435; -.
PharmGKB; PA35540; -.
eggNOG; ENOG410IJ9S; Eukaryota.
eggNOG; ENOG410YFK3; LUCA.
GeneTree; ENSGT00390000003691; -.
HOGENOM; HOG000013197; -.
HOVERGEN; HBG054037; -.
InParanoid; Q93045; -.
OMA; VCEFEDM; -.
OrthoDB; EOG091G0Y2U; -.
PhylomeDB; Q93045; -.
TreeFam; TF326935; -.
SignaLink; Q93045; -.
SIGNOR; Q93045; -.
ChiTaRS; STMN2; human.
GeneWiki; STMN2; -.
GenomeRNAi; 11075; -.
PRO; PR:Q93045; -.
Proteomes; UP000005640; Chromosome 8.
Bgee; ENSG00000104435; -.
CleanEx; HS_STMN2; -.
ExpressionAtlas; Q93045; baseline and differential.
Genevisible; Q93045; HS.
GO; GO:0005737; C:cytoplasm; IDA:UniProtKB.
GO; GO:0005768; C:endosome; IEA:UniProtKB-SubCell.
GO; GO:0005794; C:Golgi apparatus; IEA:UniProtKB-SubCell.
GO; GO:0030426; C:growth cone; IDA:UniProtKB.
GO; GO:0030027; C:lamellipodium; IDA:UniProtKB.
GO; GO:0016020; C:membrane; IEA:UniProtKB-SubCell.
GO; GO:0043005; C:neuron projection; IDA:UniProtKB.
GO; GO:0043025; C:neuronal cell body; IDA:UniProtKB.
GO; GO:0048471; C:perinuclear region of cytoplasm; IDA:UniProtKB.
GO; GO:0048306; F:calcium-dependent protein binding; IPI:UniProtKB.
GO; GO:0015631; F:tubulin binding; IBA:GO_Central.
GO; GO:1990090; P:cellular response to nerve growth factor stimulus; IDA:UniProtKB.
GO; GO:0007026; P:negative regulation of microtubule depolymerization; IDA:UniProtKB.
GO; GO:0031115; P:negative regulation of microtubule polymerization; IDA:UniProtKB.
GO; GO:0010977; P:negative regulation of neuron projection development; IDA:UniProtKB.
GO; GO:0031117; P:positive regulation of microtubule depolymerization; IDA:UniProtKB.
GO; GO:0010976; P:positive regulation of neuron projection development; IDA:UniProtKB.
InterPro; IPR026729; Stathmin-2.
InterPro; IPR030514; Stathmin_CS.
InterPro; IPR000956; Stathmin_fam.
InterPro; IPR036002; Stathmin_sf.
PANTHER; PTHR10104; PTHR10104; 1.
PANTHER; PTHR10104:SF18; PTHR10104:SF18; 1.
Pfam; PF00836; Stathmin; 1.
PIRSF; PIRSF002285; Stathmin; 1.
PRINTS; PR00345; STATHMIN.
SUPFAM; SSF101494; SSF101494; 1.
PROSITE; PS00563; STATHMIN_1; 1.
PROSITE; PS01041; STATHMIN_2; 1.
PROSITE; PS51663; STATHMIN_3; 1.
1: Evidence at protein level;
Alternative splicing; Cell projection; Coiled coil; Complete proteome;
Cytoplasm; Direct protein sequencing; Endosome; Golgi apparatus;
Lipoprotein; Membrane; Palmitate; Phosphoprotein; Reference proteome;
Ubl conjugation.
CHAIN 1 179 Stathmin-2.
/FTId=PRO_0000182396.
DOMAIN 38 179 SLD. {ECO:0000255|PROSITE-
ProRule:PRU00998}.
REGION 1 26 Membrane attachment. {ECO:0000255}.
REGION 39 96 Regulatory/phosphorylation domain.
{ECO:0000255}.
COILED 75 179 {ECO:0000255}.
MOD_RES 16 16 Phosphoserine. {ECO:0000255}.
MOD_RES 50 50 Phosphoserine.
{ECO:0000250|UniProtKB:P55821,
ECO:0000255}.
MOD_RES 62 62 Phosphoserine.
{ECO:0000244|PubMed:24275569}.
MOD_RES 73 73 Phosphoserine.
{ECO:0000250|UniProtKB:P21818}.
MOD_RES 97 97 Phosphoserine.
{ECO:0000250|UniProtKB:P16949,
ECO:0000255}.
LIPID 22 22 S-palmitoyl cysteine.
{ECO:0000269|PubMed:21471001}.
LIPID 24 24 S-palmitoyl cysteine.
{ECO:0000269|PubMed:21471001}.
VAR_SEQ 161 179 ERHAAEVRRNKELQVELSG -> LVKFISSELKESIESQFL
ELQREGEKQ (in isoform 2).
{ECO:0000303|PubMed:15489334}.
/FTId=VSP_045047.
CONFLICT 92 92 E -> G (in Ref. 1; AAB36428).
{ECO:0000305}.
CONFLICT 122 122 E -> G (in Ref. 2; BAA23326).
{ECO:0000305}.
SEQUENCE 179 AA; 20828 MW; F9A258A1B57E620D CRC64;
MAKTAMAYKE KMKELSMLSL ICSCFYPEPR NINIYTYDDM EVKQINKRAS GQAFELILKP
PSPISEAPRT LASPKKKDLS LEEIQKKLEA AEERRKSQEA QVLKQLAEKR EHEREVLQKA
LEENNNFSKM AEEKLILKME QIKENREANL AAIIERLQEK ERHAAEVRRN KELQVELSG


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