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Sterile alpha motif domain-containing protein 11 (SAM domain-containing protein 11) (Major retinal SAM domain-containing protein) (Mr-s)

 SAM11_MOUSE             Reviewed;         542 AA.
Q1RNF8; Q3TU11;
06-MAR-2007, integrated into UniProtKB/Swiss-Prot.
16-MAY-2006, sequence version 1.
28-MAR-2018, entry version 68.
RecName: Full=Sterile alpha motif domain-containing protein 11;
Short=SAM domain-containing protein 11;
AltName: Full=Major retinal SAM domain-containing protein;
Short=Mr-s;
Name=Samd11;
Mus musculus (Mouse).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
NCBI_TaxID=10090;
[1]
NUCLEOTIDE SEQUENCE [MRNA], SUBCELLULAR LOCATION, FUNCTION, TISSUE
SPECIFICITY, HOMODIMERIZATION, AND DEVELOPMENTAL STAGE.
STRAIN=ICR; TISSUE=Retina;
PubMed=16539743; DOI=10.1186/1471-213X-6-15;
Inoue T., Terada K., Furukawa A., Koike C., Tamaki Y., Araie M.,
Furukawa T.;
"Cloning and characterization of mr-s, a novel SAM domain protein,
predominantly expressed in retinal photoreceptor cells.";
BMC Dev. Biol. 6:15-15(2006).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=C57BL/6J; TISSUE=Liver;
PubMed=16141072; DOI=10.1126/science.1112014;
Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N.,
Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K.,
Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M.,
Davis M.J., Wilming L.G., Aidinis V., Allen J.E.,
Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L.,
Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M.,
Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R.,
Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G.,
di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G.,
Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M.,
Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E.,
Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N.,
Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T.,
Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H.,
Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K.,
Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J.,
Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L.,
Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K.,
Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P.,
Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O.,
Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G.,
Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M.,
Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C.,
Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y.,
Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B.,
Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K.,
Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A.,
Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K.,
Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C.,
Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J.,
Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y.,
Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T.,
Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N.,
Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N.,
Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S.,
Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J.,
Hayashizaki Y.;
"The transcriptional landscape of the mammalian genome.";
Science 309:1559-1563(2005).
-!- FUNCTION: May play a role in photoreceptor development.
{ECO:0000269|PubMed:16539743}.
-!- SUBUNIT: Homodimer.
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:16539743}.
-!- TISSUE SPECIFICITY: Predominantly expressed in retinal
photoreceptors and pineal gland. {ECO:0000269|PubMed:16539743}.
-!- DEVELOPMENTAL STAGE: Expressed from E18 in the outer aspect of
neuroblastic layer (NBL). {ECO:0000269|PubMed:16539743}.
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EMBL; AY458844; AAS67287.1; -; mRNA.
EMBL; AK161035; BAE36160.1; -; mRNA.
RefSeq; XP_006538903.1; XM_006538840.3.
RefSeq; XP_006538904.1; XM_006538841.3.
RefSeq; XP_006538905.1; XM_006538842.2.
UniGene; Mm.406833; -.
UniGene; Mm.430938; -.
ProteinModelPortal; Q1RNF8; -.
SMR; Q1RNF8; -.
iPTMnet; Q1RNF8; -.
PhosphoSitePlus; Q1RNF8; -.
PaxDb; Q1RNF8; -.
PRIDE; Q1RNF8; -.
Ensembl; ENSMUST00000217934; ENSMUSP00000151756; ENSMUSG00000096351.
Ensembl; ENSMUST00000218788; ENSMUSP00000151442; ENSMUSG00000096351.
GeneID; 231004; -.
UCSC; uc029vbk.1; mouse.
CTD; 148398; -.
MGI; MGI:2446220; Samd11.
eggNOG; ENOG410IGHY; Eukaryota.
eggNOG; ENOG4112BEA; LUCA.
GeneTree; ENSGT00550000074459; -.
HOVERGEN; HBG059816; -.
InParanoid; Q1RNF8; -.
PRO; PR:Q1RNF8; -.
Proteomes; UP000000589; Chromosome 4.
CleanEx; MM_SAMD11; -.
ExpressionAtlas; Q1RNF8; baseline and differential.
GO; GO:0005634; C:nucleus; IDA:MGI.
GO; GO:0042731; F:PH domain binding; IDA:MGI.
GO; GO:0043621; F:protein self-association; IDA:MGI.
GO; GO:0032093; F:SAM domain binding; IDA:MGI.
GO; GO:0000122; P:negative regulation of transcription by RNA polymerase II; IDA:MGI.
InterPro; IPR001660; SAM.
InterPro; IPR013761; SAM/pointed_sf.
Pfam; PF00536; SAM_1; 1.
SMART; SM00454; SAM; 1.
SUPFAM; SSF47769; SSF47769; 1.
PROSITE; PS50105; SAM_DOMAIN; 1.
2: Evidence at transcript level;
Complete proteome; Nucleus; Phosphoprotein; Reference proteome.
CHAIN 1 542 Sterile alpha motif domain-containing
protein 11.
/FTId=PRO_0000279501.
DOMAIN 404 469 SAM. {ECO:0000255|PROSITE-
ProRule:PRU00184}.
MOD_RES 342 342 Phosphothreonine.
{ECO:0000250|UniProtKB:Q96NU1}.
MOD_RES 499 499 Phosphoserine.
{ECO:0000250|UniProtKB:Q96NU1}.
CONFLICT 16 16 E -> Q (in Ref. 2; BAE36160).
{ECO:0000305}.
SEQUENCE 542 AA; 57784 MW; 6534924C1147D6A2 CRC64;
MPEHPRHCDF QRGNVEIGLG PGGDLLGKRL SCPCITSHCS SEKKARSKDP QATSLLPELE
STMAPEDHYH QLMSALSEAS SFEETQRLYH LGIPSHDLLR VRQEVATATL RGPSGLEVHL
PSSTADHRRK QGLVQRREGA VPAAATSFSE REMSQPPPLL SPQNAAHITM SSHLRPPFLG
MPTAVCQTPG FSFLPSAQAE MLARQQELLR KQSLARLEMS ELLRQKELGS VHRPLLPAPE
VALHIPEGPD ELQRRGSMLV LKHSSAPLLA LPPQGPPGPG PPIPPKESAR SRSEKGSLGV
QPSQPKETTG AGLWAQEVSE EPSKDSDGED PETAAAREGT STPSQVPAGG TRAEGRGLLS
GSTLPPPLPL GFPCGAVSPY FHTGTMGGLF TDEETTTLED VNKWTVDDVC NFVGGLSGCG
EYARVFGEQG IDGETLPLLT EEHLLNTMGL KLGPALKIRA QVAKRLGRVF YMASFPVALP
LQPPSLQAPE LSPGHQPLSP ATTTSPYEGT HLPTGQASPK QENGSGTIAL LSGAPDPSQL
LQ


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