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Structural maintenance of chromosomes protein

 Q9V3A7_DROME            Unreviewed;      1409 AA.
Q9V3A7;
01-MAY-2000, integrated into UniProtKB/TrEMBL.
01-MAY-2000, sequence version 1.
23-MAY-2018, entry version 153.
RecName: Full=Structural maintenance of chromosomes protein {ECO:0000256|PIRNR:PIRNR005719};
Name=glu {ECO:0000313|EMBL:AAF53560.1,
ECO:0000313|FlyBase:FBgn0015391};
Synonyms=anon-WO0118547.156 {ECO:0000313|EMBL:AAF53560.1},
BcDNA.LD20207 {ECO:0000313|EMBL:AAF53560.1},
BcDNA:LD20207 {ECO:0000313|EMBL:AAF53560.1},
Dmel\CG11397 {ECO:0000313|EMBL:AAF53560.1},
DmSMC4 {ECO:0000313|EMBL:AAF53560.1},
dSMC4 {ECO:0000313|EMBL:AAF53560.1},
Glu {ECO:0000313|EMBL:AAF53560.1},
Gluon {ECO:0000313|EMBL:AAF53560.1},
gluon {ECO:0000313|EMBL:AAF53560.1},
l(2)k08819 {ECO:0000313|EMBL:AAF53560.1},
SMC4 {ECO:0000313|EMBL:AAF53560.1},
Smc4 {ECO:0000313|EMBL:AAF53560.1};
ORFNames=CG11397 {ECO:0000313|EMBL:AAF53560.1,
ECO:0000313|FlyBase:FBgn0015391},
Dmel_CG11397 {ECO:0000313|EMBL:AAF53560.1};
Drosophila melanogaster (Fruit fly).
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha;
Ephydroidea; Drosophilidae; Drosophila; Sophophora.
NCBI_TaxID=7227 {ECO:0000313|EMBL:AAF53560.1, ECO:0000313|Proteomes:UP000000803};
[1] {ECO:0000313|EMBL:AAF01416.1}
NUCLEOTIDE SEQUENCE.
Steffensen S., Coelho P.A., Sunkel C.E.;
"Drosophila melanogaster Structural Maintenance of Chromosomes Protein
4, Condensin subunit DmSMC4.";
Submitted (SEP-1999) to the EMBL/GenBank/DDBJ databases.
[2] {ECO:0000313|EMBL:AAF53560.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=10731132; DOI=10.1126/science.287.5461.2185;
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D.,
Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F.,
George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N.,
Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X.,
Brandon R.C., Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D.,
Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Gabor G.L.,
Abril J.F., Agbayani A., An H.J., Andrews-Pfannkoch C., Baldwin D.,
Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M.,
Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S.,
Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P.,
Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I.,
Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P.,
de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M.,
Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P.,
Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W.,
Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K.,
Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M.,
Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J.,
Hostin D., Houston K.A., Howland T.J., Wei M.H., Ibegwam C.,
Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A.,
Kimmel B.E., Kodira C.D., Kraft C., Kravitz S., Kulp D., Lai Z.,
Lasko P., Lei Y., Levitsky A.A., Li J., Li Z., Liang Y., Lin X.,
Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D.,
Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A.,
Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L.,
Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M.,
Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G.,
Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H.,
Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.,
Spier E., Spradling A.C., Stapleton M., Strong R., Sun E.,
Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X.,
Wang Z.Y., Wassarman D.A., Weinstock G.M., Weissenbach J.,
Williams S.M., WoodageT, Worley K.C., Wu D., Yang S., Yao Q.A., Ye J.,
Yeh R.F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L.,
Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S., Zhu X., Smith H.O.,
Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.;
"The genome sequence of Drosophila melanogaster.";
Science 287:2185-2195(2000).
[3] {ECO:0000313|EMBL:AAF53560.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537568;
Celniker S.E., Wheeler D.A., Kronmiller B., Carlson J.W., Halpern A.,
Patel S., Adams M., Champe M., Dugan S.P., Frise E., Hodgson A.,
George R.A., Hoskins R.A., Laverty T., Muzny D.M., Nelson C.R.,
Pacleb J.M., Park S., Pfeiffer B.D., Richards S., Sodergren E.J.,
Svirskas R., Tabor P.E., Wan K., Stapleton M., Sutton G.G., Venter C.,
Weinstock G., Scherer S.E., Myers E.W., Gibbs R.A., Rubin G.M.;
"Finishing a whole-genome shotgun: release 3 of the Drosophila
melanogaster euchromatic genome sequence.";
Genome Biol. 3:RESEARCH0079-RESEARCH0079(2002).
[4] {ECO:0000313|EMBL:AAF53560.1, ECO:0000313|Proteomes:UP000000803}
GENOME REANNOTATION.
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537572; DOI=10.1186/gb-2002-3-12-research0083;
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S.,
Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E.,
Smith C.D., Tupy J.L., Whitfied E.J., Bayraktaroglu L., Berman B.P.,
Bettencourt B.R., Celniker S.E., de Grey A.D., Drysdale R.A.,
Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q.,
Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M.,
Lewis S.E.;
"Annotation of the Drosophila melanogaster euchromatic genome: a
systematic review.";
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002).
[5] {ECO:0000313|EMBL:AAF53560.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537573;
Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J., Svirskas R.,
Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M.,
Ashburner M., Celniker S.E.;
"The transposable elements of the Drosophila melanogaster euchromatin:
a genomics perspective.";
Genome Biol. 3:RESEARCH0084.1-RESEARCH0084.20(2002).
[6] {ECO:0000313|EMBL:AAF53560.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537574;
Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A.,
Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G.,
Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M.,
Karpen G.H.;
"Heterochromatic sequences in a Drosophila whole-genome shotgun
assembly.";
Genome Biol. 3:RESEARCH0085-RESEARCH0085(2002).
[7] {ECO:0000313|EMBL:AAF53560.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=16110336; DOI=10.1371/journal.pcbi.0010022;
Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D.,
Ashburner M., Anxolabehere D.;
"Combined evidence annotation of transposable elements in genome
sequences.";
PLoS Comput. Biol. 1:166-175(2005).
[8] {ECO:0000313|EMBL:AAF53560.1}
NUCLEOTIDE SEQUENCE.
Celniker S., Carlson J., Wan K., Frise E., Hoskins R., Park S.,
Svirskas R., Rubin G.;
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases.
[9] {ECO:0000313|EMBL:AAF53560.1}
NUCLEOTIDE SEQUENCE.
Berkeley Drosophila Genome Project;
Celniker S., Carlson J., Wan K., Pfeiffer B., Frise E., George R.,
Hoskins R., Stapleton M., Pacleb J., Park S., Svirskas R., Smith E.,
Yu C., Rubin G.;
"Drosophila melanogaster release 4 sequence.";
Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases.
[10] {ECO:0000313|EMBL:AAF53560.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569856; DOI=10.1126/science.1139815;
Smith C.D., Shu S., Mungall C.J., Karpen G.H.;
"The Release 5.1 annotation of Drosophila melanogaster
heterochromatin.";
Science 316:1586-1591(2007).
[11] {ECO:0000313|EMBL:AAF53560.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569867; DOI=10.1126/science.1139816;
Hoskins R.A., Carlson J.W., Kennedy C., Acevedo D., Evans-Holm M.,
Frise E., Wan K.H., Park S., Mendez-Lago M., Rossi F., Villasante A.,
Dimitri P., Karpen G.H., Celniker S.E.;
"Sequence finishing and mapping of Drosophila melanogaster
heterochromatin.";
Science 316:1625-1628(2007).
[12] {ECO:0000313|EMBL:ABX00747.1}
NUCLEOTIDE SEQUENCE.
STRAIN=Berkeley {ECO:0000313|EMBL:ABX00747.1};
Stapleton M., Carlson J., Frise E., Kapadia B., Park S., Wan K.,
Yu C., Celniker S.;
Submitted (NOV-2007) to the EMBL/GenBank/DDBJ databases.
[13] {ECO:0000313|EMBL:AAF53560.1}
NUCLEOTIDE SEQUENCE.
FlyBase;
Submitted (DEC-2016) to the EMBL/GenBank/DDBJ databases.
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PIRNR:PIRNR005719}.
-!- SIMILARITY: Belongs to the SMC family.
{ECO:0000256|PIRNR:PIRNR005719}.
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EMBL; AF186472; AAF01416.1; -; mRNA.
EMBL; AE014134; AAF53560.1; -; Genomic_DNA.
EMBL; BT031125; ABX00747.1; -; mRNA.
RefSeq; NP_723996.1; NM_165180.2.
UniGene; Dm.3063; -.
SMR; Q9V3A7; -.
IntAct; Q9V3A7; 13.
STRING; 7227.FBpp0080489; -.
PRIDE; Q9V3A7; -.
EnsemblMetazoa; FBtr0080935; FBpp0080489; FBgn0015391.
GeneID; 35001; -.
KEGG; dme:Dmel_CG11397; -.
UCSC; CG11397-RA; d. melanogaster.
CTD; 35001; -.
FlyBase; FBgn0015391; glu.
eggNOG; KOG0996; Eukaryota.
eggNOG; COG1196; LUCA.
GeneTree; ENSGT00900000141094; -.
KO; K06675; -.
OMA; GIYKTYN; -.
OrthoDB; EOG091G01SY; -.
Reactome; R-DME-2514853; Condensation of Prometaphase Chromosomes.
GenomeRNAi; 35001; -.
Proteomes; UP000000803; Chromosome 2L.
Bgee; FBgn0015391; -.
ExpressionAtlas; Q9V3A7; baseline and differential.
GO; GO:0000785; C:chromatin; IDA:FlyBase.
GO; GO:0005694; C:chromosome; IDA:FlyBase.
GO; GO:0000796; C:condensin complex; IDA:FlyBase.
GO; GO:0005737; C:cytoplasm; IDA:FlyBase.
GO; GO:0005634; C:nucleus; IDA:FlyBase.
GO; GO:0005524; F:ATP binding; IEA:InterPro.
GO; GO:0016887; F:ATPase activity; ISS:FlyBase.
GO; GO:0003682; F:chromatin binding; ISS:FlyBase.
GO; GO:0003677; F:DNA binding; ISS:FlyBase.
GO; GO:0000166; F:nucleotide binding; ISS:FlyBase.
GO; GO:0046982; F:protein heterodimerization activity; ISS:FlyBase.
GO; GO:0030261; P:chromosome condensation; IMP:FlyBase.
GO; GO:0051304; P:chromosome separation; IGI:FlyBase.
GO; GO:0000278; P:mitotic cell cycle; IMP:FlyBase.
GO; GO:0007076; P:mitotic chromosome condensation; IMP:FlyBase.
GO; GO:0000070; P:mitotic sister chromatid segregation; IMP:FlyBase.
GO; GO:0007422; P:peripheral nervous system development; TAS:FlyBase.
GO; GO:0000819; P:sister chromatid segregation; IMP:FlyBase.
GO; GO:0007419; P:ventral cord development; HMP:FlyBase.
InterPro; IPR027417; P-loop_NTPase.
InterPro; IPR003395; RecF/RecN/SMC_N.
InterPro; IPR024704; SMC.
InterPro; IPR010935; SMC_hinge.
InterPro; IPR036277; SMC_hinge_sf.
Pfam; PF06470; SMC_hinge; 1.
Pfam; PF02463; SMC_N; 1.
PIRSF; PIRSF005719; SMC; 2.
SMART; SM00968; SMC_hinge; 1.
SUPFAM; SSF52540; SSF52540; 2.
SUPFAM; SSF75553; SSF75553; 1.
1: Evidence at protein level;
Coiled coil {ECO:0000256|SAM:Coils};
Complete proteome {ECO:0000313|Proteomes:UP000000803};
Hydrolase {ECO:0000313|EMBL:AAF53560.1};
Nucleus {ECO:0000256|PIRNR:PIRNR005719};
Proteomics identification {ECO:0000213|PeptideAtlas:Q9V3A7};
Reference proteome {ECO:0000313|Proteomes:UP000000803}.
DOMAIN 618 734 SMC_hinge. {ECO:0000259|SMART:SM00968}.
COILED 272 299 {ECO:0000256|SAM:Coils}.
COILED 374 394 {ECO:0000256|SAM:Coils}.
COILED 409 436 {ECO:0000256|SAM:Coils}.
COILED 444 471 {ECO:0000256|SAM:Coils}.
COILED 497 517 {ECO:0000256|SAM:Coils}.
COILED 532 552 {ECO:0000256|SAM:Coils}.
COILED 783 845 {ECO:0000256|SAM:Coils}.
COILED 863 911 {ECO:0000256|SAM:Coils}.
COILED 941 1017 {ECO:0000256|SAM:Coils}.
COILED 1125 1145 {ECO:0000256|SAM:Coils}.
SEQUENCE 1409 AA; 159883 MW; F606069751842AFE CRC64;
MQKARPSKGT PKAAGGARQS GQFRVPQLTA QQQLRAQQQQ EEEDAAVDAL DDALIFDDEE
GGTRIGDIYI PPPVPPHCSM ESTGPRLIIS KIVNRNFKSY AGEVELGPFH QSFTAIIGPN
GSGKSNVIDS MMFVFGCRAN RIRCKRVSTL IHSSSSYPNL RSCSVAVHFK QIVDKGDGTC
EDVPDSSIVI ERTAMSDNSS YYQINDKRAQ LKDVAKLLKK HHVDLEHNRF LILQGEVESI
AMMKPKGQTE NETGMLEYLE DIVGTQRYIR PLQQINQRVD QLTDDRTEKH NRCKLAEREM
KDLEQPFNEA VDYLKKENEL VRTKSFHIQK IISIKKSKLE QYTQEHEACA EELKTHDEGT
AALKQSRAEK ETIIRKEIEE YEALVKKREQ IKKRLVTVES AYTEIQSTME NTNKQRKKDK
AQIEKNEKEL EDLHKLPEKN QREIEDCNKK LESLEVSKVT LNEELEKQQA ELTKTTAPLT
EKRLKLSDEL VGLKEKVNTA KGEVQVFESQ LKILKQAETT ESRKYETLKS SYEQSQKSLE
EKVTRVDELK ESIPRMKTEI ASKSAEVDKM VKEERNLSMQ CNKLRTEINE RSSVMQAQRS
NNKVLDFLMR MKMEGKIPGI LGRLGDLGGI DAKYDIAIST ACGRLDNIVT DNYETASAAI
GALKEYNVGR ATFITLDKIE HHRREANSRI NTPENVPRLY DLVKVEDDRV RTAFYFALRN
TLVCDDLEQG TRIAYGRERY RVVTLRGEMI EMTGTMSGGG SRPIRGKMGT QVRTKTAESA
DSSQISQKAL EDMQIQAEEL QARVNYCQEQ QGSLEREIQT LKNGLQRDEA EYKRLAVSIT
SLEQQMASNL KQCEAQRQRM LKKTTDERAV KEREEQIEAA KQELEQAQFA EQAVSSQIEE
IQNQYDTLRN ESVKPVEAKI KKVNSQIEKL AANVRSLNVG LATADRNITK ITGNNNNLRE
NIKAAEEKLK SLNEDRNKAK EKKEELEKEI EESEASIEGA KSQSSDIKKE IDEITKEENK
RNIERIEIDT KLQAAAGKMN KVKNDIPGWQ AQLAPLKLNE IPGETEPQAP LKELNEEELE
AETLEALQYK QTMLEEDLKT KKPNLSCIKE FNEKRLVYLD RVRVLEDITS KRNEMRDKYE
EVRKRRYKEF MDGFSIITRK LKEMYQMITL GGDAELELVD SMDPFTEGVN FTVRPPKKSW
KYISNLSGGE KTLSSLALVF ALHYYKPSPL YFMDEIDAAL DFKNVSIVGH YIKERTKNAQ
FIIVSLRVNM FELANFLVGI YKVSDCTDSI TMLNYPPTLP TQSPVVANSQ YVGGTIEGDN
TIAAENQDDT PTKKSQSPPS EQIVRLISEL GRDTTFAPPL ESTVRDTILA QNLKQAATEV
AAQPSDATGR VTTDVSLASP PSSPAILNV


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