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Structural polyprotein

 A0A076V957_9VIRU        Unreviewed;      1248 AA.
A0A076V957;
29-OCT-2014, integrated into UniProtKB/TrEMBL.
29-OCT-2014, sequence version 1.
22-NOV-2017, entry version 15.
SubName: Full=Structural polyprotein {ECO:0000313|EMBL:AIK21920.1};
synthetic recombinant Chikungunya virus strain LS3-GFP.
Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage;
Togaviridae; Alphavirus; unclassified Alphavirus.
NCBI_TaxID=1529938 {ECO:0000313|EMBL:AIK21920.1, ECO:0000313|Proteomes:UP000163570};
[1] {ECO:0000313|EMBL:AIK21920.1, ECO:0000313|Proteomes:UP000163570}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=LS3-GFP {ECO:0000313|EMBL:AIK21920.1};
PubMed=23936484;
Scholte F.E., Tas A., Martina B.E., Cordioli P., Narayanan K.,
Makino S., Snijder E.J., van Hemert M.J.;
"Characterization of synthetic Chikungunya viruses based on the
consensus sequence of recent E1-226V isolates.";
PLoS ONE 8:E71047-E71047(2013).
-!- SUBCELLULAR LOCATION: Host cytoplasm
{ECO:0000256|SAAS:SAAS00937464}.
-!- SUBCELLULAR LOCATION: Virion membrane
{ECO:0000256|SAAS:SAAS00944678}; Multi-pass membrane protein
{ECO:0000256|SAAS:SAAS00944678}.
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EMBL; KC149887; AIK21920.1; -; Other_RNA.
Proteomes; UP000163570; Genome.
GO; GO:0030430; C:host cell cytoplasm; IEA:UniProtKB-SubCell.
GO; GO:0033644; C:host cell membrane; IEA:UniProtKB-KW.
GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
GO; GO:0019028; C:viral capsid; IEA:UniProtKB-KW.
GO; GO:0055036; C:virion membrane; IEA:UniProtKB-SubCell.
GO; GO:0004252; F:serine-type endopeptidase activity; IEA:InterPro.
GO; GO:0005198; F:structural molecule activity; IEA:InterPro.
GO; GO:0039654; P:fusion of virus membrane with host endosome membrane; IEA:UniProtKB-KW.
GO; GO:0019062; P:virion attachment to host cell; IEA:UniProtKB-KW.
Gene3D; 2.60.40.350; -; 1.
InterPro; IPR002548; Alpha_E1_glycop.
InterPro; IPR000936; Alpha_E2_glycop.
InterPro; IPR002533; Alpha_E3_glycop.
InterPro; IPR000336; Flavivir/Alphavir_Ig-like_sf.
InterPro; IPR036253; Glycoprot_cen/dimer_sf.
InterPro; IPR014756; Ig_E-set.
InterPro; IPR009003; Peptidase_S1_PA.
InterPro; IPR000930; Peptidase_S3.
Pfam; PF01589; Alpha_E1_glycop; 1.
Pfam; PF00943; Alpha_E2_glycop; 1.
Pfam; PF01563; Alpha_E3_glycop; 1.
Pfam; PF00944; Peptidase_S3; 1.
PRINTS; PR00798; TOGAVIRIN.
SUPFAM; SSF50494; SSF50494; 1.
SUPFAM; SSF56983; SSF56983; 1.
SUPFAM; SSF81296; SSF81296; 1.
PROSITE; PS51690; ALPHAVIRUS_CP; 1.
4: Predicted;
Capsid protein {ECO:0000256|SAAS:SAAS00944784};
Complete proteome {ECO:0000313|Proteomes:UP000163570};
Disulfide bond {ECO:0000256|SAAS:SAAS00139753};
Fusion of virus membrane with host endosomal membrane
{ECO:0000256|SAAS:SAAS00489633};
Fusion of virus membrane with host membrane
{ECO:0000256|SAAS:SAAS00489633};
Host cytoplasm {ECO:0000256|SAAS:SAAS00936979};
Host membrane {ECO:0000256|SAAS:SAAS00944684};
Host-virus interaction {ECO:0000256|SAAS:SAAS00944767};
Membrane {ECO:0000256|SAAS:SAAS00944681,
ECO:0000256|SAAS:SAAS00944684, ECO:0000256|SAM:Phobius};
Transmembrane {ECO:0000256|SAAS:SAAS00944681,
ECO:0000256|SAM:Phobius};
Transmembrane helix {ECO:0000256|SAAS:SAAS00944681,
ECO:0000256|SAM:Phobius};
Viral attachment to host cell {ECO:0000256|SAAS:SAAS00944767};
Viral penetration into host cytoplasm {ECO:0000256|SAAS:SAAS00489633};
Virion {ECO:0000256|SAAS:SAAS00944767, ECO:0000256|SAAS:SAAS00944784};
Virus entry into host cell {ECO:0000256|SAAS:SAAS00489633,
ECO:0000256|SAAS:SAAS00944767}.
TRANSMEM 687 715 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 727 746 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 766 787 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 794 810 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 1222 1245 Helical. {ECO:0000256|SAM:Phobius}.
DOMAIN 113 261 Peptidase S3.
{ECO:0000259|PROSITE:PS51690}.
SEQUENCE 1248 AA; 138328 MW; 04EF3CDF359100A4 CRC64;
MEFIPTQTFY NRRYQPRPWT PRSTIQVIRP RPRPQRQAGQ LAQLISAVNK LTMRAVPQQK
PRRNRKNKKQ KQKQQAPQNN TNQKKQPPKK KPAQKKKKPG RRERMCMKIE NDCIFEVKHE
GKVTGYACLV GDKVMKPAHV KGTIDNADLA KLAFKRSSKY DLECAQIPVH MKSDASKFTH
EKPEGYYNWH HGAVQYSGGR FTIPTGAGKP GDSGRPIFDN KGRVVAIVLG GANEGARTAL
SVVTWNKDIV TKITPEGAEE WSLAIPVMCL LANTTFPCSQ PPCTPCCYEK EPEETLRMLE
DNVMRPGYYQ LLQASLTCSP HRQRRSTKDN FNVYKATRPY LAHCPDCGEG HSCHSPVALE
RIRNEATDGT LKIQVSLQIG IKTDDSHDWT KLRYMDNHMP ADAERAGLFV RTSAPCTITG
TMGHFILARC PKGETLTVGF TDSRKISHSC THPFHHDPPV IGREKFHSRP QHGKELPCST
YVQSTAATTE EIEVHMPPDT PDRTLMSQQS GNVKITVNGQ TVRYKCNCGG SNEGLTTTDK
VINNCKVDQC HAAVTNHKKW QYNSPLVPRN AELGDRKGKI HIPFPLANVT CRVPKARNPT
VTYGKNQVIM LLYPDHPTLL SYRNMGEEPN YQEEWVMHKK EVVLTVPTEG LEVTWGNNEP
YKYWPQLSTN GTAHGHPHEI ILYYYELYPT MTVVVVSVAT FILLSMVGMA AGMCMCARRR
CITPYELTPG ATVPFLLSLI CCIRTAKAAT YQEAAIYLWN EQQPLFWLQA LIPLAALIVL
CNCLRLLPCC CKTLAFLAVM SVGAHTVSAY EHVTVIPNTV GVPYKTLVNR PGYSPMVLEM
ELLSVTLEPT LSLDYITCEY KTVIPSPYVK CCGTAECKDK NLPDYSCKVF TGVYPFMWGG
AYCFCDAENT QLSEAHVEKS ESCKTEFASA YRAHTASASA KLRVLYQGNN ITVTAYANGD
HAVTVKDAKF IVGPMSSAWT PFDNKIVVYK GDVYNMDYPP FGAGRPGQFG DIQSRTPESK
DVYANTQLVL QRPAVGTVHV PYSQAPSGFK YWLKERGASL QHTAPFGCQI ATNPVRAVNC
AVGNMPISID IPEAAFTRVV DAPSLTDMSC EVPACTHSSD FGGVAIIKYA ASKKGKCAVH
SMTNAVTIRE AEIEVEGNSQ LQISFSTALA SAEFRVQVCS TQVHCAAECH PPKDHIVNYP
ASHTTLGVQD ISATAMSWVQ KITGGVGLVV AVAALILIVV LCVSFSRH


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