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Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial (CybS) (CII-4) (QPs3) (Succinate dehydrogenase complex subunit D) (Succinate-ubiquinone oxidoreductase cytochrome b small subunit) (Succinate-ubiquinone reductase membrane anchor subunit)

 DHSD_MOUSE              Reviewed;         159 AA.
Q9CXV1; A6H629; Q3UX11;
31-AUG-2004, integrated into UniProtKB/Swiss-Prot.
01-MAR-2003, sequence version 2.
12-SEP-2018, entry version 117.
RecName: Full=Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial;
Short=CybS;
AltName: Full=CII-4;
AltName: Full=QPs3;
AltName: Full=Succinate dehydrogenase complex subunit D;
AltName: Full=Succinate-ubiquinone oxidoreductase cytochrome b small subunit;
AltName: Full=Succinate-ubiquinone reductase membrane anchor subunit;
Flags: Precursor;
Name=Sdhd;
Mus musculus (Mouse).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
NCBI_TaxID=10090;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=C57BL/6J; TISSUE=Egg, and Head;
PubMed=16141072; DOI=10.1126/science.1112014;
Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N.,
Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K.,
Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M.,
Davis M.J., Wilming L.G., Aidinis V., Allen J.E.,
Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L.,
Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M.,
Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R.,
Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G.,
di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G.,
Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M.,
Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E.,
Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N.,
Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T.,
Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H.,
Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K.,
Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J.,
Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L.,
Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K.,
Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P.,
Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O.,
Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G.,
Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M.,
Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C.,
Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y.,
Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B.,
Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K.,
Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A.,
Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K.,
Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C.,
Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J.,
Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y.,
Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T.,
Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N.,
Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N.,
Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S.,
Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J.,
Hayashizaki Y.;
"The transcriptional landscape of the mammalian genome.";
Science 309:1559-1563(2005).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=Brain;
PubMed=15489334; DOI=10.1101/gr.2596504;
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA
project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[3]
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
TISSUE=Brown adipose tissue, Heart, and Kidney;
PubMed=21183079; DOI=10.1016/j.cell.2010.12.001;
Huttlin E.L., Jedrychowski M.P., Elias J.E., Goswami T., Rad R.,
Beausoleil S.A., Villen J., Haas W., Sowa M.E., Gygi S.P.;
"A tissue-specific atlas of mouse protein phosphorylation and
expression.";
Cell 143:1174-1189(2010).
-!- FUNCTION: Membrane-anchoring subunit of succinate dehydrogenase
(SDH) that is involved in complex II of the mitochondrial electron
transport chain and is responsible for transferring electrons from
succinate to ubiquinone (coenzyme Q). {ECO:0000250}.
-!- PATHWAY: Carbohydrate metabolism; tricarboxylic acid cycle.
-!- SUBUNIT: Component of complex II composed of four subunits: the
flavoprotein (FP) SDHA, iron-sulfur protein (IP) SDHB, and a
cytochrome b560 composed of SDHC and SDHD. {ECO:0000250}.
-!- SUBCELLULAR LOCATION: Mitochondrion inner membrane {ECO:0000250};
Multi-pass membrane protein {ECO:0000250}.
-!- SIMILARITY: Belongs to the CybS family. {ECO:0000305}.
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EMBL; AK013962; BAB29086.2; -; mRNA.
EMBL; AK135970; BAE22752.1; -; mRNA.
EMBL; BC145731; AAI45732.1; -; mRNA.
EMBL; BC145733; AAI45734.1; -; mRNA.
CCDS; CCDS40623.1; -.
RefSeq; NP_080124.1; NM_025848.3.
UniGene; Mm.10406; -.
ProteinModelPortal; Q9CXV1; -.
SMR; Q9CXV1; -.
ComplexPortal; CPX-562; Mitochondrial respiratory chain complex II.
CORUM; Q9CXV1; -.
STRING; 10090.ENSMUSP00000000175; -.
SwissPalm; Q9CXV1; -.
MaxQB; Q9CXV1; -.
PaxDb; Q9CXV1; -.
PeptideAtlas; Q9CXV1; -.
PRIDE; Q9CXV1; -.
TopDownProteomics; Q9CXV1; -.
Ensembl; ENSMUST00000000175; ENSMUSP00000000175; ENSMUSG00000000171.
GeneID; 66925; -.
KEGG; mmu:66925; -.
UCSC; uc009pjv.2; mouse.
CTD; 6392; -.
MGI; MGI:1914175; Sdhd.
eggNOG; KOG4097; Eukaryota.
eggNOG; ENOG4111RTW; LUCA.
GeneTree; ENSGT00390000010003; -.
HOGENOM; HOG000290645; -.
HOVERGEN; HBG003003; -.
InParanoid; Q9CXV1; -.
KO; K00237; -.
OMA; PCSAVDY; -.
OrthoDB; EOG091G0RHX; -.
PhylomeDB; Q9CXV1; -.
TreeFam; TF313310; -.
Reactome; R-MMU-71403; Citric acid cycle (TCA cycle).
UniPathway; UPA00223; -.
ChiTaRS; Sdhd; mouse.
PRO; PR:Q9CXV1; -.
Proteomes; UP000000589; Chromosome 9.
Bgee; ENSMUSG00000000171; Expressed in 331 organ(s), highest expression level in skeletal muscle tissue.
Genevisible; Q9CXV1; MM.
GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
GO; GO:0005743; C:mitochondrial inner membrane; ISS:UniProtKB.
GO; GO:0005749; C:mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone); ISS:UniProtKB.
GO; GO:0005739; C:mitochondrion; IDA:MGI.
GO; GO:0020037; F:heme binding; ISS:UniProtKB.
GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO; GO:0000104; F:succinate dehydrogenase activity; IMP:MGI.
GO; GO:0048039; F:ubiquinone binding; ISS:UniProtKB.
GO; GO:0071456; P:cellular response to hypoxia; IMP:MGI.
GO; GO:0006121; P:mitochondrial electron transport, succinate to ubiquinone; IBA:GO_Central.
GO; GO:0050433; P:regulation of catecholamine secretion; IMP:MGI.
GO; GO:0006099; P:tricarboxylic acid cycle; ISO:MGI.
CDD; cd03496; SQR_TypeC_CybS; 1.
Gene3D; 1.20.1300.10; -; 1.
InterPro; IPR007992; CybS.
InterPro; IPR034804; SQR/QFR_C/D.
PANTHER; PTHR13337; PTHR13337; 1.
SUPFAM; SSF81343; SSF81343; 1.
1: Evidence at protein level;
Complete proteome; Electron transport; Heme; Iron; Membrane;
Metal-binding; Mitochondrion; Mitochondrion inner membrane;
Reference proteome; Transit peptide; Transmembrane;
Transmembrane helix; Transport; Tricarboxylic acid cycle.
TRANSIT 1 56 Mitochondrion. {ECO:0000255}.
CHAIN 57 159 Succinate dehydrogenase [ubiquinone]
cytochrome b small subunit,
mitochondrial.
/FTId=PRO_0000006488.
TOPO_DOM 57 63 Mitochondrial matrix. {ECO:0000250}.
TRANSMEM 64 85 Helical. {ECO:0000250}.
TOPO_DOM 86 90 Mitochondrial intermembrane.
{ECO:0000250}.
TRANSMEM 91 111 Helical. {ECO:0000250}.
TOPO_DOM 112 120 Mitochondrial matrix. {ECO:0000250}.
TRANSMEM 121 142 Helical. {ECO:0000250}.
TOPO_DOM 143 159 Mitochondrial intermembrane.
{ECO:0000250}.
METAL 102 102 Iron (heme axial ligand); shared with
SDHC. {ECO:0000250}.
BINDING 114 114 Ubiquinone; shared with IP/SDHB.
{ECO:0000250}.
SEQUENCE 159 AA; 17014 MW; CB3B3CB37E257A06 CRC64;
MAVLLKLGVL CSGQGARALL LRSRVVRPAY VSAFLQDQPT QGRCGTQHIH LSPSHHSGSK
AASLHWTSER VVSVLLLGLI PAGYLNPCSV VDYSLAAALT LHSHWGLGQV VTDYVHGDTL
PKAARAGLLA LSALTFAGLC YFNYHDVGIC RAVAMLWKL


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