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Succinate--CoA ligase [ADP-forming] subunit beta (EC 6.2.1.5) (Succinyl-CoA synthetase subunit beta) (SCS-beta)

 A0A2E6VCA5_9FLAO        Unreviewed;       396 AA.
A0A2E6VCA5;
31-JAN-2018, integrated into UniProtKB/TrEMBL.
31-JAN-2018, sequence version 1.
28-MAR-2018, entry version 3.
RecName: Full=Succinate--CoA ligase [ADP-forming] subunit beta {ECO:0000256|HAMAP-Rule:MF_00558};
EC=6.2.1.5 {ECO:0000256|HAMAP-Rule:MF_00558};
AltName: Full=Succinyl-CoA synthetase subunit beta {ECO:0000256|HAMAP-Rule:MF_00558};
Short=SCS-beta {ECO:0000256|HAMAP-Rule:MF_00558};
Name=sucC {ECO:0000256|HAMAP-Rule:MF_00558};
ORFNames=CMO82_08145 {ECO:0000313|EMBL:MBL86613.1};
Winogradskyella sp.
Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales;
Flavobacteriaceae; Winogradskyella.
NCBI_TaxID=1883156 {ECO:0000313|EMBL:MBL86613.1};
[1] {ECO:0000313|EMBL:MBL86613.1}
NUCLEOTIDE SEQUENCE.
STRAIN=SP247 {ECO:0000313|EMBL:MBL86613.1};
Tully B.J., Graham E.D., Heidelberg J.F.;
"The Reconstruction of 2,631 Draft Metagenome-Assembled Genomes from
the Global Oceans.";
Submitted (SEP-2017) to the EMBL/GenBank/DDBJ databases.
-!- FUNCTION: Succinyl-CoA synthetase functions in the citric acid
cycle (TCA), coupling the hydrolysis of succinyl-CoA to the
synthesis of either ATP or GTP and thus represents the only step
of substrate-level phosphorylation in the TCA. The beta subunit
provides nucleotide specificity of the enzyme and binds the
substrate succinate, while the binding sites for coenzyme A and
phosphate are found in the alpha subunit. {ECO:0000256|HAMAP-
Rule:MF_00558}.
-!- CATALYTIC ACTIVITY: ATP + succinate + CoA = ADP + phosphate +
succinyl-CoA. {ECO:0000256|HAMAP-Rule:MF_00558}.
-!- COFACTOR:
Name=Mg(2+); Xref=ChEBI:CHEBI:18420;
Evidence={ECO:0000256|HAMAP-Rule:MF_00558};
Note=Binds 1 Mg(2+) ion per subunit. {ECO:0000256|HAMAP-
Rule:MF_00558};
-!- PATHWAY: Carbohydrate metabolism; tricarboxylic acid cycle;
succinate from succinyl-CoA (ligase route): step 1/1.
{ECO:0000256|HAMAP-Rule:MF_00558}.
-!- SUBUNIT: Heterotetramer of two alpha and two beta subunits.
{ECO:0000256|HAMAP-Rule:MF_00558}.
-!- SIMILARITY: Belongs to the succinate/malate CoA ligase beta
subunit family. {ECO:0000256|HAMAP-Rule:MF_00558,
ECO:0000256|SAAS:SAAS00640093}.
-!- CAUTION: Lacks conserved residue(s) required for the propagation
of feature annotation. {ECO:0000256|HAMAP-Rule:MF_00558}.
-!- CAUTION: The sequence shown here is derived from an
EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is
preliminary data. {ECO:0000313|EMBL:MBL86613.1}.
-----------------------------------------------------------------------
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EMBL; PBLD01000006; MBL86613.1; -; Genomic_DNA.
UniPathway; UPA00223; UER00999.
GO; GO:0005524; F:ATP binding; IEA:UniProtKB-UniRule.
GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-UniRule.
GO; GO:0004775; F:succinate-CoA ligase (ADP-forming) activity; IEA:UniProtKB-UniRule.
GO; GO:0006099; P:tricarboxylic acid cycle; IEA:UniProtKB-UniRule.
Gene3D; 3.30.1490.20; -; 1.
Gene3D; 3.40.50.261; -; 1.
HAMAP; MF_00558; Succ_CoA_beta; 1.
InterPro; IPR013650; ATP-grasp_succ-CoA_synth-type.
InterPro; IPR013815; ATP_grasp_subdomain_1.
InterPro; IPR005811; CoA_ligase.
InterPro; IPR017866; Succ-CoA_synthase_bsu_CS.
InterPro; IPR005809; Succ_CoA_synthase_bsu.
InterPro; IPR016102; Succinyl-CoA_synth-like.
PANTHER; PTHR11815; PTHR11815; 1.
Pfam; PF08442; ATP-grasp_2; 1.
Pfam; PF00549; Ligase_CoA; 1.
PIRSF; PIRSF001554; SucCS_beta; 1.
SUPFAM; SSF52210; SSF52210; 1.
TIGRFAMs; TIGR01016; sucCoAbeta; 1.
PROSITE; PS01217; SUCCINYL_COA_LIG_3; 1.
3: Inferred from homology;
ATP-binding {ECO:0000256|HAMAP-Rule:MF_00558};
Ligase {ECO:0000256|HAMAP-Rule:MF_00558,
ECO:0000256|SAAS:SAAS00650721, ECO:0000313|EMBL:MBL86613.1};
Magnesium {ECO:0000256|HAMAP-Rule:MF_00558,
ECO:0000256|SAAS:SAAS00666299};
Metal-binding {ECO:0000256|HAMAP-Rule:MF_00558,
ECO:0000256|SAAS:SAAS00666331};
Nucleotide-binding {ECO:0000256|HAMAP-Rule:MF_00558};
Tricarboxylic acid cycle {ECO:0000256|HAMAP-Rule:MF_00558,
ECO:0000256|SAAS:SAAS00665633}.
DOMAIN 2 210 ATP-grasp_2. {ECO:0000259|Pfam:PF08442}.
DOMAIN 271 390 Ligase_CoA. {ECO:0000259|Pfam:PF00549}.
NP_BIND 57 59 ATP. {ECO:0000256|HAMAP-Rule:MF_00558}.
REGION 330 332 Substrate binding; shared with subunit
alpha. {ECO:0000256|HAMAP-Rule:MF_00558}.
METAL 208 208 Magnesium. {ECO:0000256|HAMAP-
Rule:MF_00558}.
METAL 222 222 Magnesium. {ECO:0000256|HAMAP-
Rule:MF_00558}.
BINDING 50 50 ATP. {ECO:0000256|HAMAP-Rule:MF_00558}.
BINDING 106 106 ATP; via amide nitrogen.
{ECO:0000256|HAMAP-Rule:MF_00558}.
BINDING 116 116 ATP. {ECO:0000256|HAMAP-Rule:MF_00558}.
BINDING 273 273 Substrate; shared with subunit alpha.
{ECO:0000256|HAMAP-Rule:MF_00558}.
SEQUENCE 396 AA; 42761 MW; 69FF5428E4963FBF CRC64;
MNLHEYQGKE LLNSFGVRIQ RGIVAQTADE AVEAAKKLTE ETGTGWHVIK AQVHAGGRGK
GGGVKLAKNL DEVKDLAGQI IGMNLVTPQT SAEGKKVHQV LVAEDVYYPG DNEPEEYYMS
VLLNRGSGKN MIMYSTEGGM DIEEVAEKTP HLIFTEEIDP ALGLLPFQAR RVAFNLGLSG
TAFKEMTKFV SSLYTAYVKS DASLFEINPV LKTSDDKIMA VDSKVTLDAN ALYRHKDLAE
LRDKREENPI EVEAGELGLN YVDLDGNVGC MVNGAGLAMA TMDLIKQAGG EPANFLDVGG
TADAARVEAA FKIILKDPNV KAILINIFGG IVRCDRVAQG VIDAYKNMGN INVPIIVRLQ
GTNADIAKDL IDNSGLDVLS ATEFQEAADK VQEVLS


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