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Succinyl-diaminopimelate desuccinylase (SDAP desuccinylase) (EC 3.5.1.18) (N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase)

 A0A0L6JBH5_9RHIZ        Unreviewed;       389 AA.
A0A0L6JBH5;
11-NOV-2015, integrated into UniProtKB/TrEMBL.
11-NOV-2015, sequence version 1.
25-OCT-2017, entry version 14.
RecName: Full=Succinyl-diaminopimelate desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690, ECO:0000256|SAAS:SAAS00765884};
Short=SDAP desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690};
EC=3.5.1.18 {ECO:0000256|HAMAP-Rule:MF_01690};
AltName: Full=N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase {ECO:0000256|HAMAP-Rule:MF_01690};
Name=dapE {ECO:0000256|HAMAP-Rule:MF_01690};
ORFNames=AKJ13_09120 {ECO:0000313|EMBL:KNY23033.1};
Methylobacterium sp. ARG-1.
Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
Methylobacteriaceae; Methylobacterium.
NCBI_TaxID=1692501 {ECO:0000313|EMBL:KNY23033.1, ECO:0000313|Proteomes:UP000036734};
[1] {ECO:0000313|Proteomes:UP000036734}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=ARG-1 {ECO:0000313|Proteomes:UP000036734};
Hirst R., James-Pederson M., Tai A.;
"Draft Genome Sequence of Methylobacterium sp. Strain ARG-1 Isolated
from the White-Rot Fungus, Armillaria gallica.";
Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases.
-!- FUNCTION: Catalyzes the hydrolysis of N-succinyl-L,L-
diaminopimelic acid (SDAP), forming succinate and LL-2,6-
diaminoheptanedioate (DAP), an intermediate involved in the
bacterial biosynthesis of lysine and meso-diaminopimelic acid, an
essential component of bacterial cell walls.
{ECO:0000256|SAAS:SAAS00765822}.
-!- CATALYTIC ACTIVITY: N-succinyl-LL-2,6-diaminoheptanedioate + H(2)O
= succinate + LL-2,6-diaminoheptanedioate. {ECO:0000256|HAMAP-
Rule:MF_01690, ECO:0000256|SAAS:SAAS00765871}.
-!- PATHWAY: Amino-acid biosynthesis; L-lysine biosynthesis via DAP
pathway; LL-2,6-diaminopimelate from (S)-tetrahydrodipicolinate
(succinylase route): step 3/3. {ECO:0000256|HAMAP-Rule:MF_01690,
ECO:0000256|SAAS:SAAS00765795}.
-!- SUBUNIT: Homodimer. {ECO:0000256|HAMAP-Rule:MF_01690,
ECO:0000256|SAAS:SAAS00765883}.
-!- SIMILARITY: Belongs to the peptidase M20A family. DapE subfamily.
{ECO:0000256|HAMAP-Rule:MF_01690, ECO:0000256|SAAS:SAAS00765843}.
-!- CAUTION: The sequence shown here is derived from an
EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is
preliminary data. {ECO:0000313|EMBL:KNY23033.1}.
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EMBL; LHCD01000006; KNY23033.1; -; Genomic_DNA.
RefSeq; WP_050733041.1; NZ_LHCD01000006.1.
EnsemblBacteria; KNY23033; KNY23033; AKJ13_09120.
PATRIC; fig|1692501.3.peg.5786; -.
UniPathway; UPA00034; UER00021.
Proteomes; UP000036734; Unassembled WGS sequence.
GO; GO:0050897; F:cobalt ion binding; IEA:UniProtKB-UniRule.
GO; GO:0008237; F:metallopeptidase activity; IEA:InterPro.
GO; GO:0009014; F:succinyl-diaminopimelate desuccinylase activity; IEA:UniProtKB-UniRule.
GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-UniRule.
GO; GO:0019877; P:diaminopimelate biosynthetic process; IEA:UniProtKB-UniRule.
GO; GO:0009089; P:lysine biosynthetic process via diaminopimelate; IEA:UniProtKB-UniRule.
CDD; cd03891; M20_DapE_proteobac; 1.
HAMAP; MF_01690; DapE; 1.
InterPro; IPR001261; ArgE/DapE_CS.
InterPro; IPR036264; Bact_exopeptidase_dim_dom.
InterPro; IPR005941; DapE_proteobac.
InterPro; IPR002933; Peptidase_M20.
InterPro; IPR011650; Peptidase_M20_dimer.
Pfam; PF07687; M20_dimer; 1.
Pfam; PF01546; Peptidase_M20; 1.
SUPFAM; SSF55031; SSF55031; 1.
TIGRFAMs; TIGR01246; dapE_proteo; 1.
PROSITE; PS00759; ARGE_DAPE_CPG2_2; 1.
3: Inferred from homology;
Amino-acid biosynthesis {ECO:0000256|HAMAP-Rule:MF_01690,
ECO:0000256|SAAS:SAAS00765799};
Cobalt {ECO:0000256|HAMAP-Rule:MF_01690,
ECO:0000256|SAAS:SAAS00765819};
Complete proteome {ECO:0000313|Proteomes:UP000036734};
Diaminopimelate biosynthesis {ECO:0000256|HAMAP-Rule:MF_01690,
ECO:0000256|SAAS:SAAS00765792};
Hydrolase {ECO:0000256|HAMAP-Rule:MF_01690,
ECO:0000256|SAAS:SAAS00786827};
Lysine biosynthesis {ECO:0000256|HAMAP-Rule:MF_01690,
ECO:0000256|SAAS:SAAS00765799};
Metal-binding {ECO:0000256|HAMAP-Rule:MF_01690,
ECO:0000256|SAAS:SAAS00786925};
Zinc {ECO:0000256|HAMAP-Rule:MF_01690, ECO:0000256|SAAS:SAAS00765827}.
DOMAIN 183 288 M20_dimer. {ECO:0000259|Pfam:PF07687}.
ACT_SITE 76 76 {ECO:0000256|HAMAP-Rule:MF_01690}.
ACT_SITE 141 141 Proton acceptor. {ECO:0000256|HAMAP-
Rule:MF_01690}.
METAL 74 74 Cobalt or zinc 1. {ECO:0000256|HAMAP-
Rule:MF_01690}.
METAL 106 106 Cobalt or zinc 1. {ECO:0000256|HAMAP-
Rule:MF_01690}.
METAL 106 106 Cobalt or zinc 2. {ECO:0000256|HAMAP-
Rule:MF_01690}.
METAL 142 142 Cobalt or zinc 2. {ECO:0000256|HAMAP-
Rule:MF_01690}.
METAL 170 170 Cobalt or zinc 1. {ECO:0000256|HAMAP-
Rule:MF_01690}.
METAL 359 359 Cobalt or zinc 2. {ECO:0000256|HAMAP-
Rule:MF_01690}.
SEQUENCE 389 AA; 41154 MW; 1E53C0381030FCD7 CRC64;
MPADHSALSL ARALIRCPSV TPEDRGALDV VAQALSGAGF SVERPVFSEP GYPDTPNLYA
RIGDRGPCLV FAGHTDVVPE GDGAWRHGPF EATVADGLLY GRGAADMKGG IACMLAATLA
FVARRGGTVP GSIAFLITGD EEGPAVNGTV KLLDWARARG ERFDHCLLGE PTNPGRLGEM
IKIGRRGSLT GKLTVLGRQG HVAYPHKAEN PIPGLLRLAS ALVAEPLDGG TAHFDASNLE
FTTIDVGNPA TNVIPATARA TFNVRFNDDW TAASLGAELR RRLEQAAGNA VRFSLDLQPS
NAPAFLTQPD AFVDLVSRAI QVETGLTPTL STTGGTSDAR FIKGACPVIE FGLVGETMHQ
VDECVAVADI ERLTAIYERV LEDYFPAER


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