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Syndetin (Coiled-coil domain-containing protein 132) (EARP/GARPII complex subunit VPS50)

 VPS50_CHICK             Reviewed;         949 AA.
Q5ZKV9;
23-OCT-2007, integrated into UniProtKB/Swiss-Prot.
23-NOV-2004, sequence version 1.
23-MAY-2018, entry version 65.
RecName: Full=Syndetin {ECO:0000250|UniProtKB:Q96JG6};
AltName: Full=Coiled-coil domain-containing protein 132 {ECO:0000305};
AltName: Full=EARP/GARPII complex subunit VPS50 {ECO:0000250|UniProtKB:Q96JG6};
Name=VPS50 {ECO:0000250|UniProtKB:Q96JG6}; Synonyms=CCDC132;
ORFNames=RCJMB04_8p23 {ECO:0000303|PubMed:15642098};
Gallus gallus (Chicken).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
Phasianidae; Phasianinae; Gallus.
NCBI_TaxID=9031;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=CB; TISSUE=Bursa of Fabricius;
PubMed=15642098; DOI=10.1186/gb-2004-6-1-r6;
Caldwell R.B., Kierzek A.M., Arakawa H., Bezzubov Y., Zaim J.,
Fiedler P., Kutter S., Blagodatski A., Kostovska D., Koter M.,
Plachy J., Carninci P., Hayashizaki Y., Buerstedde J.-M.;
"Full-length cDNAs from chicken bursal lymphocytes to facilitate gene
function analysis.";
Genome Biol. 6:R6.1-R6.9(2005).
-!- FUNCTION: Acts as component of the EARP complex that is involved
in endocytic recycling. The EARP complex associates with Rab4-
positive endosomes and promotes recycling of internalized
transferrin receptor (TFRC) to the plasma membrane.
{ECO:0000250|UniProtKB:Q96JG6}.
-!- SUBUNIT: Component of the endosome-associated retrograde protein
(EARP) complex. {ECO:0000250|UniProtKB:Q96JG6}.
-!- SUBCELLULAR LOCATION: Recycling endosome
{ECO:0000250|UniProtKB:Q96JG6}.
-!- SIMILARITY: Belongs to the syndetin family. {ECO:0000305}.
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EMBL; AJ719975; CAG31634.1; -; mRNA.
RefSeq; NP_001012872.1; NM_001012854.2.
UniGene; Gga.21841; -.
STRING; 9031.ENSGALP00000037320; -.
PaxDb; Q5ZKV9; -.
PRIDE; Q5ZKV9; -.
Ensembl; ENSGALT00000015463; ENSGALP00000015447; ENSGALG00000009500.
GeneID; 420560; -.
KEGG; gga:420560; -.
CTD; 55610; -.
eggNOG; KOG2939; Eukaryota.
eggNOG; ENOG410XS88; LUCA.
GeneTree; ENSGT00390000003442; -.
HOGENOM; HOG000230787; -.
HOVERGEN; HBG075377; -.
InParanoid; Q5ZKV9; -.
PhylomeDB; Q5ZKV9; -.
PRO; PR:Q5ZKV9; -.
Proteomes; UP000000539; Chromosome 2.
Bgee; ENSGALG00000009500; -.
ExpressionAtlas; Q5ZKV9; baseline and differential.
GO; GO:1990745; C:EARP complex; ISS:UniProtKB.
GO; GO:0055037; C:recycling endosome; ISS:UniProtKB.
GO; GO:0000149; F:SNARE binding; IEA:Ensembl.
GO; GO:0032456; P:endocytic recycling; ISS:UniProtKB.
GO; GO:0015031; P:protein transport; IEA:UniProtKB-KW.
InterPro; IPR019514; DUF2451_C.
InterPro; IPR019515; VPS54_N.
Pfam; PF10474; DUF2451; 1.
Pfam; PF10475; Vps54_N; 1.
2: Evidence at transcript level;
Coiled coil; Complete proteome; Endosome; Protein transport;
Reference proteome; Transport.
CHAIN 1 949 Syndetin.
/FTId=PRO_0000307267.
COILED 82 104 {ECO:0000255}.
COILED 198 226 {ECO:0000255}.
SEQUENCE 949 AA; 109553 MW; F6EF8F827FFFF2B5 CRC64;
MQKIKSLMTR QGLRSPQESV HDLSPIENLR FPTKEELRES WEEPTDPQAQ QEIINSIEEV
YFSNDAFDIV KYELERLPPV LSLQELEEYR DKLKQQQAAE LERVTSLQNG LQLAAVICAD
GRRHLNIAKE GFTQTSLGLL ANQRKRQLLI GLLKSLRTIK TLQRTDVRLS EMLEEEDYPG
AIQLCLECQK AASTFKHYSC ISELNSKLQD TLEQIEEQLD VALSKICKNF DINHYTKVQQ
AYRLLGKTQT AMDQLHMHFT QAIHNTVFQV VLGYVELCAG NTDTKFQKLQ YKDLCTHITS
DSYIPCLADL CKALWEVMLS YYRTMQWHEN HDQDEAATVS SVSDGSSVVG TEENSFDRSY
VKKKLEHGLS RIWQDVQLKV KTYLLGTDLS NFKYDDFIFV LDVISRLMQV GEEFCGSKSE
VLQESIRKQS VNYFKTYHRT RLEELRMFLE NETWELCPVK SSFDILQLHE FKFMVQSRSP
SVSPSKQPAS AISTTVTLFE QYCNGGNPFE IQADSKDDET EDVLASNGYE SDEQEKSAYQ
EYDSDSDVPE ELKRDYVDEQ TGDAPMKSVS RETLRSRKKS DYSLNKGNAP ILTNTTLNVV
RLVGKYMQMM NILKPIAFDV IHFMSQLFDY YLYAVYTFFG RNDTFESTGL GLSSSRLRTT
LNRIQESLID LEVSADPTGT LTAAEERKEK VPSPHLSHLV VLTSGSSLYG LAERVVATES
LVFLAEQFEF LQPHLDAVMP AAKKPFLQQF YSQTVSTANE LRKPVYWIVA AKAIDYEQML
LLMANVKWDV KEIMSQHNVY VDSLLKEFEE FNRRLNEVSK RVRIPLIVSN ILWEHCMRLA
NRTLVEGYAN VKKCSNEGRA LMQLDFQQFL MKLEKLTDIR PIPDKEFVET YIKAYYLTEN
DMERWIKEHR EYSTKHLTNL VNVCLGSHIN KKARQKLLAA IDDIDRPKR


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