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T-box transcription factor TBX3 (T-box protein 3)

 TBX3_MOUSE              Reviewed;         741 AA.
P70324; E9QM97; Q60708; Q8BWH7;
01-NOV-1997, integrated into UniProtKB/Swiss-Prot.
27-JUL-2011, sequence version 3.
05-DEC-2018, entry version 154.
RecName: Full=T-box transcription factor TBX3;
Short=T-box protein 3;
Name=Tbx3;
Mus musculus (Mouse).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
NCBI_TaxID=10090;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
STRAIN=C57BL/6J; TISSUE=Lung;
PubMed=16141072; DOI=10.1126/science.1112014;
Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N.,
Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K.,
Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M.,
Davis M.J., Wilming L.G., Aidinis V., Allen J.E.,
Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L.,
Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M.,
Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R.,
Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G.,
di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G.,
Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M.,
Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E.,
Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N.,
Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T.,
Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H.,
Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K.,
Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J.,
Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L.,
Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K.,
Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P.,
Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O.,
Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G.,
Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M.,
Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C.,
Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y.,
Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B.,
Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K.,
Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A.,
Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K.,
Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C.,
Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J.,
Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y.,
Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T.,
Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N.,
Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N.,
Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S.,
Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J.,
Hayashizaki Y.;
"The transcriptional landscape of the mammalian genome.";
Science 309:1559-1563(2005).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=C57BL/6J;
PubMed=19468303; DOI=10.1371/journal.pbio.1000112;
Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S.,
She X., Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W.,
Kapustin Y., Meric P., Maglott D., Birtle Z., Marques A.C., Graves T.,
Zhou S., Teague B., Potamousis K., Churas C., Place M., Herschleb J.,
Runnheim R., Forrest D., Amos-Landgraf J., Schwartz D.C., Cheng Z.,
Lindblad-Toh K., Eichler E.E., Ponting C.P.;
"Lineage-specific biology revealed by a finished genome assembly of
the mouse.";
PLoS Biol. 7:E1000112-E1000112(2009).
[3]
NUCLEOTIDE SEQUENCE [MRNA] OF 112-313 (ISOFORM 2).
TISSUE=Embryo;
PubMed=8878690;
Agulnik S.I., Garvey N., Hancock S., Ruvinsky I., Chapman D.L.,
Agulnik I., Bollag R.J., Papaioannou V.E., Silver L.M.;
"Evolution of mouse T-box genes by tandem duplication and cluster
dispersion.";
Genetics 144:249-254(1996).
[4]
NUCLEOTIDE SEQUENCE [MRNA] OF 185-286 (ISOFORM 2).
TISSUE=Embryo;
PubMed=7920656; DOI=10.1038/ng0794-383;
Bollag R.J., Siegfried Z., Cebra-Thomas J.A., Garvey N., Davison E.M.,
Silver L.M.;
"An ancient family of embryonically expressed mouse genes sharing a
conserved protein motif with the T locus.";
Nat. Genet. 7:383-389(1994).
[5]
DEVELOPMENTAL STAGE.
PubMed=8853987;
DOI=10.1002/(SICI)1097-0177(199608)206:4<379::AID-AJA4>3.0.CO;2-F;
Chapman D.L., Garvey N., Hancock S., Alexiou M., Agulnik S.I.,
Gibson-Brown J.J., Cebra-Thomas J., Bollag R.J., Silver L.M.,
Papaioannou V.E.;
"Expression of the T-box family genes, Tbx1-Tbx5, during early mouse
development.";
Dev. Dyn. 206:379-390(1996).
[6]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-705, AND IDENTIFICATION
BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
TISSUE=Liver;
PubMed=17242355; DOI=10.1073/pnas.0609836104;
Villen J., Beausoleil S.A., Gerber S.A., Gygi S.P.;
"Large-scale phosphorylation analysis of mouse liver.";
Proc. Natl. Acad. Sci. U.S.A. 104:1488-1493(2007).
[7]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-705, AND IDENTIFICATION
BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
TISSUE=Brown adipose tissue, Kidney, Liver, and Lung;
PubMed=21183079; DOI=10.1016/j.cell.2010.12.001;
Huttlin E.L., Jedrychowski M.P., Elias J.E., Goswami T., Rad R.,
Beausoleil S.A., Villen J., Haas W., Sowa M.E., Gygi S.P.;
"A tissue-specific atlas of mouse protein phosphorylation and
expression.";
Cell 143:1174-1189(2010).
-!- FUNCTION: Transcriptional repressor involved in developmental
processes. Probably plays a role in limb pattern formation. Acts
as a negative regulator of PML function in cellular senescence (By
similarity). {ECO:0000250}.
-!- SUBUNIT: Interacts with PML. {ECO:0000250}.
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-
ProRule:PRU00201}.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=2;
Name=1;
IsoId=P70324-1; Sequence=Displayed;
Name=2;
IsoId=P70324-2; Sequence=VSP_013377;
-!- TISSUE SPECIFICITY: In adults, highest levels in lung. Also found
in brain, heart, kidney, liver and ovary.
-!- DEVELOPMENTAL STAGE: First expressed in the blastocyst at day 3.5.
At day 7.5, expressed in the extraembryonic endoderm and in the
mesoderm of the chorion and amnion. At day 9.5, in the facial
region, forelimb, pharyngeal epithelium, mesenchyme of the
pharyngeal arches and the lateral body wall and, at day 12.5, in
the trigeminal ganglia, developing central nervous system and in
the mammary buds. {ECO:0000269|PubMed:8853987}.
-----------------------------------------------------------------------
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EMBL; AK052453; BAC34999.1; -; mRNA.
EMBL; AC140675; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; U57328; AAC53107.1; -; mRNA.
EMBL; U15567; AAC52698.1; -; mRNA.
CCDS; CCDS19613.1; -. [P70324-1]
CCDS; CCDS19614.1; -. [P70324-2]
RefSeq; NP_035665.2; NM_011535.3. [P70324-1]
RefSeq; XP_006530339.1; XM_006530276.3. [P70324-1]
UniGene; Mm.219139; -.
ProteinModelPortal; P70324; -.
SMR; P70324; -.
BioGrid; 203988; 2.
IntAct; P70324; 2.
STRING; 10090.ENSMUSP00000018748; -.
iPTMnet; P70324; -.
PhosphoSitePlus; P70324; -.
MaxQB; P70324; -.
PaxDb; P70324; -.
PeptideAtlas; P70324; -.
PRIDE; P70324; -.
Ensembl; ENSMUST00000018748; ENSMUSP00000018748; ENSMUSG00000018604. [P70324-1]
Ensembl; ENSMUST00000079719; ENSMUSP00000078657; ENSMUSG00000018604. [P70324-2]
Ensembl; ENSMUST00000121021; ENSMUSP00000112519; ENSMUSG00000018604. [P70324-2]
GeneID; 21386; -.
KEGG; mmu:21386; -.
UCSC; uc008zgu.2; mouse. [P70324-1]
CTD; 6926; -.
MGI; MGI:98495; Tbx3.
eggNOG; KOG3585; Eukaryota.
eggNOG; ENOG410XSTS; LUCA.
GeneTree; ENSGT00940000158066; -.
HOGENOM; HOG000038046; -.
HOVERGEN; HBG000412; -.
InParanoid; P70324; -.
KO; K10177; -.
OMA; RHPFLNA; -.
OrthoDB; EOG091G0I8R; -.
TreeFam; TF106341; -.
PRO; PR:P70324; -.
Proteomes; UP000000589; Chromosome 5.
Bgee; ENSMUSG00000018604; Expressed in 293 organ(s), highest expression level in blastocyst.
CleanEx; MM_TBX3; -.
ExpressionAtlas; P70324; baseline and differential.
Genevisible; P70324; MM.
GO; GO:0005634; C:nucleus; IDA:MGI.
GO; GO:0003700; F:DNA-binding transcription factor activity; IDA:MGI.
GO; GO:0001078; F:proximal promoter DNA-binding transcription repressor activity, RNA polymerase II-specific; ISO:MGI.
GO; GO:0001102; F:RNA polymerase II activating transcription factor binding; IPI:BHF-UCL.
GO; GO:0000978; F:RNA polymerase II proximal promoter sequence-specific DNA binding; ISO:MGI.
GO; GO:0001085; F:RNA polymerase II transcription factor binding; IPI:BHF-UCL.
GO; GO:0043565; F:sequence-specific DNA binding; ISS:UniProtKB.
GO; GO:0009887; P:animal organ morphogenesis; ISO:MGI.
GO; GO:0008595; P:anterior/posterior axis specification, embryo; ISS:UniProtKB.
GO; GO:0003167; P:atrioventricular bundle cell differentiation; IMP:MGI.
GO; GO:0001568; P:blood vessel development; IMP:MGI.
GO; GO:0060444; P:branching involved in mammary gland duct morphogenesis; IMP:MGI.
GO; GO:0055007; P:cardiac muscle cell differentiation; IMP:MGI.
GO; GO:0060923; P:cardiac muscle cell fate commitment; IMP:MGI.
GO; GO:0007569; P:cell aging; IDA:MGI.
GO; GO:0090398; P:cellular senescence; ISS:UniProtKB.
GO; GO:0042733; P:embryonic digit morphogenesis; IMP:MGI.
GO; GO:0035115; P:embryonic forelimb morphogenesis; ISS:UniProtKB.
GO; GO:0035050; P:embryonic heart tube development; IMP:MGI.
GO; GO:0035116; P:embryonic hindlimb morphogenesis; IMP:MGI.
GO; GO:0030540; P:female genitalia development; ISS:UniProtKB.
GO; GO:0046884; P:follicle-stimulating hormone secretion; ISS:UniProtKB.
GO; GO:0035136; P:forelimb morphogenesis; ISO:MGI.
GO; GO:0001947; P:heart looping; IMP:MGI.
GO; GO:0003007; P:heart morphogenesis; IMP:MGI.
GO; GO:0001701; P:in utero embryonic development; IMP:MGI.
GO; GO:0035108; P:limb morphogenesis; IMP:MGI.
GO; GO:0021761; P:limbic system development; IMP:MGI.
GO; GO:0032275; P:luteinizing hormone secretion; ISS:UniProtKB.
GO; GO:0030539; P:male genitalia development; ISS:UniProtKB.
GO; GO:0030879; P:mammary gland development; IMP:MGI.
GO; GO:0060596; P:mammary placode formation; IDA:MGI.
GO; GO:0048332; P:mesoderm morphogenesis; ISS:UniProtKB.
GO; GO:0043066; P:negative regulation of apoptotic process; ISS:UniProtKB.
GO; GO:0030857; P:negative regulation of epithelial cell differentiation; IMP:MGI.
GO; GO:0045662; P:negative regulation of myoblast differentiation; ISS:UniProtKB.
GO; GO:0000122; P:negative regulation of transcription by RNA polymerase II; ISO:MGI.
GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IDA:MGI.
GO; GO:0003151; P:outflow tract morphogenesis; IMP:MGI.
GO; GO:0045787; P:positive regulation of cell cycle; ISS:UniProtKB.
GO; GO:0008284; P:positive regulation of cell proliferation; ISS:UniProtKB.
GO; GO:2000648; P:positive regulation of stem cell proliferation; IMP:MGI.
GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IMP:MGI.
GO; GO:0042127; P:regulation of cell proliferation; IMP:MGI.
GO; GO:0060021; P:roof of mouth development; IGI:MGI.
GO; GO:0060931; P:sinoatrial node cell development; IMP:MGI.
GO; GO:0001501; P:skeletal system development; ISS:UniProtKB.
GO; GO:0010159; P:specification of animal organ position; IDA:MGI.
GO; GO:0019827; P:stem cell population maintenance; IMP:MGI.
GO; GO:0060412; P:ventricular septum morphogenesis; IMP:MGI.
CDD; cd00182; TBOX; 1.
Gene3D; 2.60.40.820; -; 1.
InterPro; IPR008967; p53-like_TF_DNA-bd.
InterPro; IPR036960; T-box_sf.
InterPro; IPR022582; TBX.
InterPro; IPR001699; TF_T-box.
InterPro; IPR018186; TF_T-box_CS.
PANTHER; PTHR11267; PTHR11267; 1.
Pfam; PF00907; T-box; 1.
Pfam; PF12598; TBX; 1.
PRINTS; PR00937; TBOX.
SMART; SM00425; TBOX; 1.
SUPFAM; SSF49417; SSF49417; 1.
PROSITE; PS01283; TBOX_1; 1.
PROSITE; PS01264; TBOX_2; 1.
PROSITE; PS50252; TBOX_3; 1.
1: Evidence at protein level;
Alternative splicing; Complete proteome; Developmental protein;
DNA-binding; Nucleus; Phosphoprotein; Reference proteome; Repressor;
Transcription; Transcription regulation.
CHAIN 1 741 T-box transcription factor TBX3.
/FTId=PRO_0000184429.
DNA_BIND 107 220 T-box; first part. {ECO:0000255|PROSITE-
ProRule:PRU00201}.
DNA_BIND 241 305 T-box; second part. {ECO:0000255|PROSITE-
ProRule:PRU00201}.
MOD_RES 369 369 Phosphoserine.
{ECO:0000250|UniProtKB:O15119}.
MOD_RES 432 432 Phosphoserine.
{ECO:0000250|UniProtKB:O15119}.
MOD_RES 438 438 Phosphoserine.
{ECO:0000250|UniProtKB:O15119}.
MOD_RES 456 456 Phosphoserine.
{ECO:0000250|UniProtKB:O15119}.
MOD_RES 705 705 Phosphoserine.
{ECO:0000244|PubMed:17242355,
ECO:0000244|PubMed:21183079}.
MOD_RES 736 736 Phosphoserine.
{ECO:0000250|UniProtKB:O15119}.
MOD_RES 738 738 Phosphoserine.
{ECO:0000250|UniProtKB:O15119}.
MOD_RES 740 740 Phosphoserine.
{ECO:0000250|UniProtKB:O15119}.
VAR_SEQ 221 240 Missing (in isoform 2).
{ECO:0000303|PubMed:7920656,
ECO:0000303|PubMed:8878690}.
/FTId=VSP_013377.
CONFLICT 154 155 DI -> T (in Ref. 3; AAC53107).
{ECO:0000305}.
CONFLICT 184 184 M -> R (in Ref. 3; AAC53107).
{ECO:0000305}.
CONFLICT 306 309 TGNG -> IGHC (in Ref. 3; AAC53107).
{ECO:0000305}.
CONFLICT 569 569 S -> Y (in Ref. 1; BAC34999).
{ECO:0000305}.
CONFLICT 717 717 S -> N (in Ref. 1; BAC34999).
{ECO:0000305}.
SEQUENCE 741 AA; 79160 MW; B502FE817EFF124D CRC64;
MSLSMRDPVI PGTSMAYHPF LPHRAPDFAM SAVLGHQPPF FPALTLPPNG AAALSLPGAL
AKPIMDQLVG AAETGIPFSS LGPQAHLRPL KTMEPEEDVE DDPKVHLEAK ELWDQFHKRG
TEMVITKSGR RMFPPFKVRC SGLDKKAKYI LLMDIIAADD CRYKFHNSRW MVAGKADPEM
PKRMYIHPDS PATGEQWMSK VVTFHKLKLT NNISDKHGFT LAFPSDHATW QGNYSFGTQT
ILNSMHKYQP RFHIVRANDI LKLPYSTFRT YLFPETEFIA VTAYQNDKIT QLKIDNNPFA
KGFRDTGNGR REKRKQLTLQ SMRVFEERHK KETSDESSSE QAAFNCFAQA SSPAVSIVGT
SNLKDLCPSE AESDAEAESK EEHGPEACDA AKISTTTAEE PGRDKGSPAT RAQLFPAEPS
RARDTARLDK ASPDSRHSPA TISSSTRVPG ADERRSPGRE GPVATKVDEA RAIPAKDAFA
PLSVQTDATA HLAQGPLPGL GFAPGLAGQQ FFNGHPLFLH PGQFAMGGAF SSMAAGMGPL
LATVSGASTG VSGLESTAMA SAAAAQGLSG ASAATLPFHL QQHVLASQGL AMSPFGSLFP
YPYTYMAAAA AASTAAASSS VHRHPFLNLN SMRPRLRYSP YSIPVPVPDS SSLLATALPS
MASAAGPLDG KAAALAASPA SVAVDSGSEL NSRSSTLSSG SVSLSPKLCS EKEAATSELQ
SIQRLVSGLE AKPDRSCSGS P


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