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T-cell surface glycoprotein CD4

 G1T4B9_RABIT            Unreviewed;       459 AA.
G1T4B9;
19-OCT-2011, integrated into UniProtKB/TrEMBL.
19-OCT-2011, sequence version 1.
28-MAR-2018, entry version 39.
SubName: Full=T-cell surface glycoprotein CD4 {ECO:0000313|Ensembl:ENSOCUP00000011113};
Name=CD4 {ECO:0000313|Ensembl:ENSOCUP00000011113};
Oryctolagus cuniculus (Rabbit).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae;
Oryctolagus.
NCBI_TaxID=9986 {ECO:0000313|Ensembl:ENSOCUP00000011113, ECO:0000313|Proteomes:UP000001811};
[1] {ECO:0000313|Ensembl:ENSOCUP00000011113, ECO:0000313|Proteomes:UP000001811}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Thorbecke {ECO:0000313|Proteomes:UP000001811};
PubMed=21993624; DOI=10.1038/nature10530;
Lindblad-Toh K., Garber M., Zuk O., Lin M.F., Parker B.J.,
Washietl S., Kheradpour P., Ernst J., Jordan G., Mauceli E.,
Ward L.D., Lowe C.B., Holloway A.K., Clamp M., Gnerre S., Alfoldi J.,
Beal K., Chang J., Clawson H., Cuff J., Di Palma F., Fitzgerald S.,
Flicek P., Guttman M., Hubisz M.J., Jaffe D.B., Jungreis I.,
Kent W.J., Kostka D., Lara M., Martins A.L., Massingham T., Moltke I.,
Raney B.J., Rasmussen M.D., Robinson J., Stark A., Vilella A.J.,
Wen J., Xie X., Zody M.C., Baldwin J., Bloom T., Chin C.W., Heiman D.,
Nicol R., Nusbaum C., Young S., Wilkinson J., Worley K.C., Kovar C.L.,
Muzny D.M., Gibbs R.A., Cree A., Dihn H.H., Fowler G., Jhangiani S.,
Joshi V., Lee S., Lewis L.R., Nazareth L.V., Okwuonu G.,
Santibanez J., Warren W.C., Mardis E.R., Weinstock G.M., Wilson R.K.,
Delehaunty K., Dooling D., Fronik C., Fulton L., Fulton B., Graves T.,
Minx P., Sodergren E., Birney E., Margulies E.H., Herrero J.,
Green E.D., Haussler D., Siepel A., Goldman N., Pollard K.S.,
Pedersen J.S., Lander E.S., Kellis M.;
"A high-resolution map of human evolutionary constraint using 29
mammals.";
Nature 478:476-482(2011).
[2] {ECO:0000313|Ensembl:ENSOCUP00000011113}
IDENTIFICATION.
STRAIN=Thorbecke {ECO:0000313|Ensembl:ENSOCUP00000011113};
Ensembl;
Submitted (SEP-2011) to UniProtKB.
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EMBL; AAGW02051578; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; AAGW02051579; -; NOT_ANNOTATED_CDS; Genomic_DNA.
Ensembl; ENSOCUT00000012911; ENSOCUP00000011113; ENSOCUG00000012911.
GeneTree; ENSGT00390000001745; -.
OMA; PEAGMWQ; -.
OrthoDB; EOG091G0AZL; -.
Proteomes; UP000001811; Chromosome 8.
Bgee; ENSOCUG00000012911; -.
GO; GO:0005788; C:endoplasmic reticulum lumen; IEA:Ensembl.
GO; GO:0005789; C:endoplasmic reticulum membrane; IEA:Ensembl.
GO; GO:0009897; C:external side of plasma membrane; IEA:Ensembl.
GO; GO:0005887; C:integral component of plasma membrane; IEA:Ensembl.
GO; GO:0045121; C:membrane raft; IEA:Ensembl.
GO; GO:0015026; F:coreceptor activity; IEA:InterPro.
GO; GO:0042011; F:interleukin-16 binding; IEA:Ensembl.
GO; GO:0042012; F:interleukin-16 receptor activity; IEA:Ensembl.
GO; GO:0042289; F:MHC class II protein binding; IEA:Ensembl.
GO; GO:0042803; F:protein homodimerization activity; IEA:Ensembl.
GO; GO:1990782; F:protein tyrosine kinase binding; IEA:Ensembl.
GO; GO:0008270; F:zinc ion binding; IEA:Ensembl.
GO; GO:0007155; P:cell adhesion; IEA:InterPro.
GO; GO:0097011; P:cellular response to granulocyte macrophage colony-stimulating factor stimulus; IEA:Ensembl.
GO; GO:0001816; P:cytokine production; IEA:Ensembl.
GO; GO:0050829; P:defense response to Gram-negative bacterium; IEA:Ensembl.
GO; GO:0035397; P:helper T cell enhancement of adaptive immune response; IEA:Ensembl.
GO; GO:0006955; P:immune response; IEA:InterPro.
GO; GO:0006948; P:induction by virus of host cell-cell fusion; IEA:Ensembl.
GO; GO:0035723; P:interleukin-15-mediated signaling pathway; IEA:Ensembl.
GO; GO:0032507; P:maintenance of protein location in cell; IEA:Ensembl.
GO; GO:0050850; P:positive regulation of calcium-mediated signaling; IEA:Ensembl.
GO; GO:0070374; P:positive regulation of ERK1 and ERK2 cascade; IEA:Ensembl.
GO; GO:0043123; P:positive regulation of I-kappaB kinase/NF-kappaB signaling; IEA:Ensembl.
GO; GO:0045657; P:positive regulation of monocyte differentiation; IEA:Ensembl.
GO; GO:0050731; P:positive regulation of peptidyl-tyrosine phosphorylation; IEA:Ensembl.
GO; GO:0045860; P:positive regulation of protein kinase activity; IEA:Ensembl.
GO; GO:0050870; P:positive regulation of T cell activation; IEA:Ensembl.
GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IEA:Ensembl.
GO; GO:0046598; P:positive regulation of viral entry into host cell; IEA:Ensembl.
GO; GO:0051924; P:regulation of calcium ion transport; IEA:Ensembl.
GO; GO:0045058; P:T cell selection; IEA:Ensembl.
Gene3D; 2.60.40.10; -; 4.
InterPro; IPR000973; CD4.
InterPro; IPR015274; CD4-extracel.
InterPro; IPR007110; Ig-like_dom.
InterPro; IPR036179; Ig-like_dom_sf.
InterPro; IPR013783; Ig-like_fold.
InterPro; IPR008424; Ig_C2-set.
InterPro; IPR003599; Ig_sub.
InterPro; IPR013106; Ig_V-set.
InterPro; IPR013151; Immunoglobulin.
InterPro; IPR021963; Tcell_CD4_Cterm.
PANTHER; PTHR11422:SF0; PTHR11422:SF0; 1.
Pfam; PF05790; C2-set; 2.
Pfam; PF09191; CD4-extracel; 1.
Pfam; PF00047; ig; 1.
Pfam; PF12104; Tcell_CD4_C; 1.
PRINTS; PR00692; CD4TCANTIGEN.
SMART; SM00409; IG; 3.
SMART; SM00406; IGv; 1.
SUPFAM; SSF48726; SSF48726; 4.
PROSITE; PS50835; IG_LIKE; 1.
4: Predicted;
Complete proteome {ECO:0000313|Proteomes:UP000001811};
Immunoglobulin domain {ECO:0000256|SAAS:SAAS00442402};
Membrane {ECO:0000256|SAM:Phobius};
Reference proteome {ECO:0000313|Proteomes:UP000001811};
Signal {ECO:0000256|SAM:SignalP};
Transmembrane {ECO:0000256|SAM:Phobius};
Transmembrane helix {ECO:0000256|SAM:Phobius}.
SIGNAL 1 25 {ECO:0000256|SAM:SignalP}.
CHAIN 26 459 {ECO:0000256|SAM:SignalP}.
/FTId=PRO_5003422953.
TRANSMEM 398 421 Helical. {ECO:0000256|SAM:Phobius}.
DOMAIN 20 123 Ig-like. {ECO:0000259|PROSITE:PS50835}.
SEQUENCE 459 AA; 50857 MW; 7280734CD0473EA5 CRC64;
MNRRIYFQCL LLVLPLALLP AATWGKTVVR GKAGAIVELP CQSSQKRNSV FNWKHANQVK
ILGNQGSSSS SFWLKGNSPL SNRVESKKNM WDQGSFPLVI KDLRMDDSGT YICEVGDKKM
EVELLVFRLT ANPNTRLLHG QSLTLTLEGP SVGSPSVQWK SPENKIIETG KTCSMPKLRL
QDSGTWSCHL SFQDQNKLEL DIKIVVLGFQ KASATVYKKE GEQVEFSFPL NFEDESLSGE
LMWQADGASS AQSWVSFSLE DRKVSVQKIL PDLKIQMSKG LPLSLTLPQA LHRYAGSGNL
SLTLDKGKLH QQVSLVMLKV TQVKNKLICE VLGPIDPKMK LSLKLEDQEA KVSTPKMVQV
LDPKAGTWQC LLSSGDQVLL ESKADVLATG LSHQQPTLLA GALGGAAGLV LFAGLCIYCC
VKCRHRRHQA QRMSQIKKLL SEKKTCQCPH RLQKTYNLL


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