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TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L (PCAF-associated factor 65 beta) (PAF65-beta)

 TAF5L_MOUSE             Reviewed;         589 AA.
Q91WQ5; Q8BTL5;
26-APR-2004, integrated into UniProtKB/Swiss-Prot.
01-DEC-2001, sequence version 1.
28-MAR-2018, entry version 140.
RecName: Full=TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L;
AltName: Full=PCAF-associated factor 65 beta;
Short=PAF65-beta;
Name=Taf5l; Synonyms=Paf65b;
Mus musculus (Mouse).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
NCBI_TaxID=10090;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=C57BL/6J; TISSUE=Colon;
PubMed=16141072; DOI=10.1126/science.1112014;
Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N.,
Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K.,
Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M.,
Davis M.J., Wilming L.G., Aidinis V., Allen J.E.,
Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L.,
Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M.,
Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R.,
Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G.,
di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G.,
Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M.,
Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E.,
Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N.,
Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T.,
Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H.,
Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K.,
Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J.,
Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L.,
Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K.,
Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P.,
Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O.,
Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G.,
Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M.,
Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C.,
Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y.,
Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B.,
Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K.,
Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A.,
Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K.,
Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C.,
Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J.,
Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y.,
Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T.,
Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N.,
Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N.,
Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S.,
Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J.,
Hayashizaki Y.;
"The transcriptional landscape of the mammalian genome.";
Science 309:1559-1563(2005).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=Kidney;
PubMed=15489334; DOI=10.1101/gr.2596504;
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA
project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
-!- FUNCTION: Functions as a component of the PCAF complex. The PCAF
complex is capable of efficiently acetylating histones in a
nucleosomal context. The PCAF complex could be considered as the
human version of the yeast SAGA complex (By similarity).
{ECO:0000250}.
-!- SUBUNIT: The PCAF complex is composed of a number of TBP-
associated factors (TAFS), such as TAF5, TAF5L, TAF6, TAF6L, TAF9,
TAF10 and TAF12, PCAF, and also PCAF-associated factors (PAFs),
such as TADA2L/ADA2, TADA3L/ADA3 and SPT3. Component of the STAGA
transcription coactivator-HAT complex, at least composed of
SUPT3H, GCN5L2, TAF5L, TAF6L, SUPT7L, TADA3L, TAD1L, TAF10, TAF12,
TRRAP and TAF9 (By similarity). {ECO:0000250}.
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
-!- SIMILARITY: Belongs to the WD repeat TAF5 family. {ECO:0000305}.
-----------------------------------------------------------------------
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EMBL; AK033477; BAC28309.1; -; mRNA.
EMBL; AK089463; BAC40894.1; -; mRNA.
EMBL; BC013550; AAH13550.1; -; mRNA.
CCDS; CCDS22767.1; -.
RefSeq; NP_598727.1; NM_133966.2.
RefSeq; XP_006530609.1; XM_006530546.3.
UniGene; Mm.291777; -.
ProteinModelPortal; Q91WQ5; -.
IntAct; Q91WQ5; 2.
MINT; Q91WQ5; -.
STRING; 10090.ENSMUSP00000090726; -.
iPTMnet; Q91WQ5; -.
PhosphoSitePlus; Q91WQ5; -.
EPD; Q91WQ5; -.
MaxQB; Q91WQ5; -.
PaxDb; Q91WQ5; -.
PRIDE; Q91WQ5; -.
Ensembl; ENSMUST00000093039; ENSMUSP00000090726; ENSMUSG00000038697.
Ensembl; ENSMUST00000165628; ENSMUSP00000128710; ENSMUSG00000038697.
GeneID; 102162; -.
KEGG; mmu:102162; -.
UCSC; uc009nww.2; mouse.
CTD; 27097; -.
MGI; MGI:1919039; Taf5l.
eggNOG; KOG0263; Eukaryota.
eggNOG; ENOG410XPM5; LUCA.
GeneTree; ENSGT00910000144058; -.
HOGENOM; HOG000212423; -.
HOVERGEN; HBG050226; -.
InParanoid; Q91WQ5; -.
KO; K03130; -.
OMA; YCNAPAD; -.
OrthoDB; EOG091G03SP; -.
PhylomeDB; Q91WQ5; -.
TreeFam; TF300669; -.
PRO; PR:Q91WQ5; -.
Proteomes; UP000000589; Chromosome 8.
Bgee; ENSMUSG00000038697; -.
ExpressionAtlas; Q91WQ5; baseline and differential.
Genevisible; Q91WQ5; MM.
GO; GO:0036464; C:cytoplasmic ribonucleoprotein granule; ISO:MGI.
GO; GO:0016607; C:nuclear speck; ISO:MGI.
GO; GO:0005634; C:nucleus; ISO:MGI.
GO; GO:0030914; C:STAGA complex; ISO:MGI.
GO; GO:0033276; C:transcription factor TFTC complex; ISO:MGI.
GO; GO:0004402; F:histone acetyltransferase activity; IEA:Ensembl.
GO; GO:0003713; F:transcription coactivator activity; ISO:MGI.
GO; GO:0043966; P:histone H3 acetylation; ISO:MGI.
GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW.
GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW.
CDD; cd08044; TAF5_NTD2; 1.
Gene3D; 1.25.40.500; -; 1.
Gene3D; 2.130.10.10; -; 2.
InterPro; IPR020472; G-protein_beta_WD-40_rep.
InterPro; IPR037826; TAF5L.
InterPro; IPR007582; TFIID_NTD2.
InterPro; IPR037264; TFIID_NTD2_sf.
InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
InterPro; IPR001680; WD40_repeat.
InterPro; IPR019775; WD40_repeat_CS.
InterPro; IPR017986; WD40_repeat_dom.
InterPro; IPR036322; WD40_repeat_dom_sf.
PANTHER; PTHR19879:SF6; PTHR19879:SF6; 1.
Pfam; PF04494; TFIID_NTD2; 1.
Pfam; PF00400; WD40; 5.
PRINTS; PR00320; GPROTEINBRPT.
SMART; SM00320; WD40; 6.
SUPFAM; SSF160897; SSF160897; 1.
SUPFAM; SSF50978; SSF50978; 2.
PROSITE; PS00678; WD_REPEATS_1; 2.
PROSITE; PS50082; WD_REPEATS_2; 5.
PROSITE; PS50294; WD_REPEATS_REGION; 1.
2: Evidence at transcript level;
Complete proteome; Nucleus; Reference proteome; Repeat; Transcription;
Transcription regulation; WD repeat.
CHAIN 1 589 TAF5-like RNA polymerase II p300/CBP-
associated factor-associated factor 65
kDa subunit 5L.
/FTId=PRO_0000051262.
REPEAT 266 305 WD 1.
REPEAT 340 379 WD 2.
REPEAT 382 421 WD 3.
REPEAT 424 463 WD 4.
REPEAT 466 505 WD 5.
REPEAT 508 547 WD 6.
SEQUENCE 589 AA; 65911 MW; ABD880FD73F1FCD8 CRC64;
MKRVRTEQVQ VAVSCYLKRR QYVDSEGPLK QGLRLSQTPE EMAANLTVQS ESGCANAVSA
APCQAEPQQY EVQFGRLRSF LTDSDSQYSR EVMPLLYPLF VYLHLNLVQS GPKSTVESFY
SRFHGMFLQN ASQKDVIEQL QTTQTIQDIL SNFQLRAFLD NKYVVRLQED SYNYLIRYLQ
SDNNTALCKV LAVHIHLDVQ PAKRTDYQLY ASGGSSRTEN SSLEPPEVPS PILQNEAALE
VLQESIKRVK DGPPSLTTIC FYAFYNTEQL LNTAEISSDS KLLAAGFDNS CIKLWSLRSK
KLKSEPHHVD TSRIRLACDT LEEEENEEDN TGTEMKILRG HCGPVYSTRF LADSSGLLSC
SEDMSIRYWD LGSFTNTVLY QGHAYPVWDV DISPFSLYFA SGSHDRTARL WSFDRTYPLR
IYAGHLADVD CVKFHPNSNY LATGSTDKTV RLWSAQQGNS VRLFTGHRGP VLSLSFSPNG
KYLASAGEDQ RLKLWDLASG TLFKELRGHT DSITSLAFSP DSGLIASASM DNSVRVWDIR
STCCNTPADG SSGELVGVYT GQMSNVLSVQ FMACNLLLVT GITQENQEH


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