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TAL effector protein PthXo1 (Avirulence protein PthXo1) (TAL effector protein Tal2b)

 PTHX1_XANOP             Reviewed;        1373 AA.
B2SU53; Q6RKD2;
29-OCT-2014, integrated into UniProtKB/Swiss-Prot.
16-OCT-2013, sequence version 2.
07-JUN-2017, entry version 48.
RecName: Full=TAL effector protein PthXo1 {ECO:0000303|PubMed:22223736};
AltName: Full=Avirulence protein PthXo1 {ECO:0000303|PubMed:15553245};
AltName: Full=TAL effector protein Tal2b {ECO:0000303|PubMed:18452608};
Name=pthXo1; Synonyms=tal2b; OrderedLocusNames=PXO_00227;
Xanthomonas oryzae pv. oryzae (strain PXO99A).
Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales;
Xanthomonadaceae; Xanthomonas.
NCBI_TaxID=360094;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=PXO99A;
PubMed=18452608; DOI=10.1186/1471-2164-9-204;
Salzberg S.L., Sommer D.D., Schatz M.C., Phillippy A.M.,
Rabinowicz P.D., Tsuge S., Furutani A., Ochiai H., Delcher A.L.,
Kelley D., Madupu R., Puiu D., Radune D., Shumway M., Trapnell C.,
Aparna G., Jha G., Pandey A., Patil P.B., Ishihara H., Meyer D.F.,
Szurek B., Verdier V., Koebnik R., Dow J.M., Ryan R.P., Hirata H.,
Tsuyumu S., Won Lee S., Seo Y.-S., Sriariyanum M., Ronald P.C.,
Sonti R.V., Van Sluys M.-A., Leach J.E., White F.F., Bogdanove A.J.;
"Genome sequence and rapid evolution of the rice pathogen Xanthomonas
oryzae pv. oryzae PXO99A.";
BMC Genomics 9:204-204(2008).
[2]
NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 276-1241, FUNCTION, AND
DISRUPTION PHENOTYPE.
STRAIN=PXO99A;
PubMed=15553245; DOI=10.1094/MPMI.2004.17.11.1192;
Yang B., White F.F.;
"Diverse members of the AvrBs3/PthA family of type III effectors are
major virulence determinants in bacterial blight disease of rice.";
Mol. Plant Microbe Interact. 17:1192-1200(2004).
[3]
FUNCTION, DISRUPTION PHENOTYPE, AND INDUCTION OF HOST GENES.
STRAIN=PXO99A;
PubMed=16798873; DOI=10.1073/pnas.0604088103;
Yang B., Sugio A., White F.F.;
"Os8N3 is a host disease-susceptibility gene for bacterial blight of
rice.";
Proc. Natl. Acad. Sci. U.S.A. 103:10503-10508(2006).
[4]
FUNCTION, AND DNA-BINDING.
PubMed=20345643; DOI=10.1111/j.1469-8137.2010.03217.x;
Roemer P., Recht S., Strauss T., Elsaesser J., Schornack S., Boch J.,
Wang S., Lahaye T.;
"Promoter elements of rice susceptibility genes are bound and
activated by specific TAL effectors from the bacterial blight
pathogen, Xanthomonas oryzae pv. oryzae.";
New Phytol. 187:1048-1057(2010).
[5]
BIOTECHNOLOGY.
PubMed=20660643; DOI=10.1534/genetics.110.120717;
Christian M., Cermak T., Doyle E.L., Schmidt C., Zhang F., Hummel A.,
Bogdanove A.J., Voytas D.F.;
"Targeting DNA double-strand breaks with TAL effector nucleases.";
Genetics 186:757-761(2010).
[6]
BIOTECHNOLOGY USES REVIEW.
PubMed=25057889; DOI=10.1042/BJ20140295;
Wright D.A., Li T., Yang B., Spalding M.H.;
"TALEN-mediated genome editing: prospects and perspectives.";
Biochem. J. 462:15-24(2014).
[7]
BIOTECHNOLOGY USES REVIEW.
PubMed=24602153; DOI=10.1111/tpj.12431;
de Lange O., Binder A., Lahaye T.;
"From dead leaf, to new life: TAL effectors as tools for synthetic
biology.";
Plant J. 78:753-771(2014).
[8]
X-RAY CRYSTALLOGRAPHY (3.00 ANGSTROMS) OF 127-1149 IN COMPLEX WITH
DNA, DNA-BINDING, AND DOMAIN.
STRAIN=PXO99A;
PubMed=22223736; DOI=10.1126/science.1216211;
Mak A.N., Bradley P., Cernadas R.A., Bogdanove A.J., Stoddard B.L.;
"The crystal structure of TAL effector PthXo1 bound to its DNA
target.";
Science 335:716-719(2012).
-!- FUNCTION: Avirulence protein. Acts as a transcription factor in
rice, inducing expression of a number of host genes including
SWEET11 (Os8N3, XA13, AC Q6YZF3) in susceptible plants with the
Xa13 allele. Plants with the xa13 allele, which has an altered
promoter, are resistant to bacterial blight caused by this
bacterial strain and do not induce SWEET11. The xa13 allele
elicits an atypical hypersensitive response (HR). PthXo1 binds
SWEET11 promoter DNA in a sequence-specific manner.
{ECO:0000269|PubMed:15553245, ECO:0000269|PubMed:16798873,
ECO:0000269|PubMed:20345643, ECO:0000269|PubMed:22223736}.
-!- SUBCELLULAR LOCATION: Secreted {ECO:0000250|UniProtKB:P14727}.
Host nucleus {ECO:0000250|UniProtKB:P14727}. Note=Secreted via a
type III secretions system (TTSS). Localizes to the plant cell
nucleus. {ECO:0000250|UniProtKB:P14727}.
-!- DOMAIN: The central DNA-binding region is composed of 23.5 tandem
core repeats with 1 base-specifying residue (BSR residue 13, also
called the repeat variable diresidue, RVD, residues 12 and 13)
each of which recognizes 1 base in the target DNA. The BSR is the
only residue which contacts DNA in a sequence-specific manner.
{ECO:0000269|PubMed:22223736}.
-!- DISRUPTION PHENOTYPE: Reduced virulence in susceptible rice; its
introduction into a deletion mutant restores virulence to the
bacteria in rice plants. No longer induces SWEET11 (Os8N3, XA13,
AC Q6YZF3). {ECO:0000269|PubMed:15553245,
ECO:0000269|PubMed:16798873}.
-!- BIOTECHNOLOGY: By combining the central DNA-binding domain with
the catalytic domain of the restriction endonuclease FokI, TALE-
nuclease (TALEN) enzymes able to target specific dsDNA sequences
can be created that enable eukaryotic genome modification. Other
potential uses as transcriptional repressors, for transposon
targeting, DNA methylation or histone tail modifictions are also
possible. {ECO:0000269|PubMed:20660643,
ECO:0000303|PubMed:24602153, ECO:0000303|PubMed:25057889}.
-!- SIMILARITY: Belongs to the transcription activator-like effector
(TALE) family. {ECO:0000305}.
-----------------------------------------------------------------------
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Distributed under the Creative Commons Attribution-NoDerivs License
-----------------------------------------------------------------------
EMBL; CP000967; ACD58243.2; -; Genomic_DNA.
EMBL; AY495676; AAS46025.1; -; Genomic_DNA.
RefSeq; WP_041182630.1; NC_010717.2.
PDB; 3UGM; X-ray; 3.00 A; A=127-1149.
PDBsum; 3UGM; -.
SMR; B2SU53; -.
EnsemblBacteria; ACD58243; ACD58243; PXO_00227.
KEGG; xop:PXO_00227; -.
HOGENOM; HOG000060719; -.
KO; K18876; -.
Proteomes; UP000001740; Chromosome.
GO; GO:0005576; C:extracellular region; IEA:UniProtKB-SubCell.
GO; GO:0042025; C:host cell nucleus; IEA:UniProtKB-SubCell.
GO; GO:0003824; F:catalytic activity; IEA:InterPro.
GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO; GO:0034053; P:modulation by symbiont of host defense-related programmed cell death; IEA:UniProtKB-KW.
GO; GO:0009405; P:pathogenesis; IEA:UniProtKB-KW.
GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW.
GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW.
Gene3D; 3.40.47.10; -; 2.
InterPro; IPR005042; TAL_effector_rpt.
InterPro; IPR016039; Thiolase-like.
Pfam; PF03377; TAL_effector; 24.
1: Evidence at protein level;
3D-structure; Complete proteome; DNA-binding; Host nucleus;
Hypersensitive response elicitation; Repeat; Secreted; Transcription;
Transcription regulation; Virulence.
CHAIN 1 1373 TAL effector protein PthXo1.
/FTId=PRO_0000430621.
REPEAT 221 239 Cryptic repeat -1.
{ECO:0000303|PubMed:22223736}.
REPEAT 256 273 Cryptic repeat 0.
{ECO:0000303|PubMed:22223736}.
REPEAT 289 322 Core repeat 1.
{ECO:0000303|PubMed:15553245}.
REPEAT 323 356 Core repeat 2.
{ECO:0000303|PubMed:15553245}.
REPEAT 357 390 Core repeat 3.
{ECO:0000303|PubMed:15553245}.
REPEAT 391 424 Core repeat 4.
{ECO:0000303|PubMed:15553245}.
REPEAT 425 458 Core repeat 5.
{ECO:0000303|PubMed:15553245}.
REPEAT 459 492 Core repeat 6.
{ECO:0000303|PubMed:15553245}.
REPEAT 493 525 Core repeat 7.
{ECO:0000303|PubMed:15553245}.
REPEAT 526 559 Core repeat 8.
{ECO:0000303|PubMed:15553245}.
REPEAT 560 593 Core repeat 9.
{ECO:0000303|PubMed:15553245}.
REPEAT 594 627 Core repeat 10.
{ECO:0000303|PubMed:15553245}.
REPEAT 628 661 Core repeat 11.
{ECO:0000303|PubMed:15553245}.
REPEAT 662 695 Core repeat 12.
{ECO:0000303|PubMed:15553245}.
REPEAT 696 729 Core repeat 13.
{ECO:0000303|PubMed:15553245}.
REPEAT 714 760 HEAT 1. {ECO:0000255}.
REPEAT 730 763 Core repeat 14.
{ECO:0000303|PubMed:15553245}.
REPEAT 764 797 Core repeat 15.
{ECO:0000303|PubMed:15553245}.
REPEAT 782 828 HEAT 2. {ECO:0000255}.
REPEAT 798 831 Core repeat 16.
{ECO:0000303|PubMed:15553245}.
REPEAT 832 865 Core repeat 17.
{ECO:0000303|PubMed:15553245}.
REPEAT 850 893 HEAT 3. {ECO:0000255}.
REPEAT 866 899 Core repeat 18.
{ECO:0000303|PubMed:15553245}.
REPEAT 900 933 Core repeat 19.
{ECO:0000303|PubMed:15553245}.
REPEAT 918 961 HEAT 4. {ECO:0000255}.
REPEAT 934 967 Core repeat 20.
{ECO:0000303|PubMed:15553245}.
REPEAT 968 1001 Core repeat 21.
{ECO:0000303|PubMed:15553245}.
REPEAT 1002 1034 Core repeat 22.
{ECO:0000303|PubMed:15553245}.
REPEAT 1035 1068 Core repeat 23.
{ECO:0000303|PubMed:15553245}.
REPEAT 1053 1091 HEAT 5. {ECO:0000255}.
REPEAT 1069 1087 Core repeat 23.5.
{ECO:0000303|PubMed:15553245}.
REGION 1136 1364 Acidic activation domain.
{ECO:0000250|UniProtKB:P14727}.
MOTIF 1222 1225 Nuclear localization signal NLS1.
{ECO:0000250|UniProtKB:P14727}.
MOTIF 1268 1271 Nuclear localization signal NLS2.
{ECO:0000250|UniProtKB:P14727}.
MOTIF 1305 1308 Nuclear localization signal NLS3.
{ECO:0000250|UniProtKB:P14727}.
CONFLICT 358 358 P -> T (in Ref. 2; AAS46025).
{ECO:0000305}.
CONFLICT 1120 1120 M -> L (in Ref. 2; AAS46025).
{ECO:0000305}.
CONFLICT 1137 1137 V -> I (in Ref. 2; AAS46025).
{ECO:0000305}.
CONFLICT 1142 1142 G -> P (in Ref. 2; AAS46025).
{ECO:0000305}.
CONFLICT 1150 1154 ADYAQ -> PDLAH (in Ref. 2; AAS46025).
{ECO:0000305}.
CONFLICT 1160 1164 EFFQC -> GFFQS (in Ref. 2; AAS46025).
{ECO:0000305}.
CONFLICT 1170 1174 YAFDE -> QAFDD (in Ref. 2; AAS46025).
{ECO:0000305}.
CONFLICT 1184 1184 N -> H (in Ref. 2; AAS46025).
{ECO:0000305}.
CONFLICT 1198 1202 LEARG -> FEARY (in Ref. 2; AAS46025).
{ECO:0000305}.
HELIX 222 228 {ECO:0000244|PDB:3UGM}.
HELIX 234 245 {ECO:0000244|PDB:3UGM}.
TURN 246 252 {ECO:0000244|PDB:3UGM}.
HELIX 258 266 {ECO:0000244|PDB:3UGM}.
HELIX 268 282 {ECO:0000244|PDB:3UGM}.
HELIX 291 298 {ECO:0000244|PDB:3UGM}.
HELIX 303 313 {ECO:0000244|PDB:3UGM}.
HELIX 315 319 {ECO:0000244|PDB:3UGM}.
HELIX 325 328 {ECO:0000244|PDB:3UGM}.
TURN 329 333 {ECO:0000244|PDB:3UGM}.
HELIX 337 354 {ECO:0000244|PDB:3UGM}.
HELIX 359 366 {ECO:0000244|PDB:3UGM}.
HELIX 371 381 {ECO:0000244|PDB:3UGM}.
HELIX 383 389 {ECO:0000244|PDB:3UGM}.
HELIX 393 400 {ECO:0000244|PDB:3UGM}.
HELIX 405 422 {ECO:0000244|PDB:3UGM}.
HELIX 427 434 {ECO:0000244|PDB:3UGM}.
STRAND 435 438 {ECO:0000244|PDB:3UGM}.
HELIX 440 454 {ECO:0000244|PDB:3UGM}.
HELIX 461 468 {ECO:0000244|PDB:3UGM}.
HELIX 473 488 {ECO:0000244|PDB:3UGM}.
HELIX 495 504 {ECO:0000244|PDB:3UGM}.
HELIX 506 521 {ECO:0000244|PDB:3UGM}.
HELIX 528 535 {ECO:0000244|PDB:3UGM}.
TURN 538 540 {ECO:0000244|PDB:3UGM}.
HELIX 541 555 {ECO:0000244|PDB:3UGM}.
HELIX 562 568 {ECO:0000244|PDB:3UGM}.
STRAND 569 571 {ECO:0000244|PDB:3UGM}.
HELIX 574 591 {ECO:0000244|PDB:3UGM}.
HELIX 597 603 {ECO:0000244|PDB:3UGM}.
HELIX 608 618 {ECO:0000244|PDB:3UGM}.
HELIX 620 622 {ECO:0000244|PDB:3UGM}.
TURN 623 626 {ECO:0000244|PDB:3UGM}.
HELIX 631 637 {ECO:0000244|PDB:3UGM}.
HELIX 643 656 {ECO:0000244|PDB:3UGM}.
TURN 657 659 {ECO:0000244|PDB:3UGM}.
HELIX 664 670 {ECO:0000244|PDB:3UGM}.
HELIX 676 686 {ECO:0000244|PDB:3UGM}.
HELIX 688 694 {ECO:0000244|PDB:3UGM}.
HELIX 699 702 {ECO:0000244|PDB:3UGM}.
TURN 703 706 {ECO:0000244|PDB:3UGM}.
HELIX 711 727 {ECO:0000244|PDB:3UGM}.
HELIX 733 739 {ECO:0000244|PDB:3UGM}.
HELIX 744 754 {ECO:0000244|PDB:3UGM}.
HELIX 757 760 {ECO:0000244|PDB:3UGM}.
HELIX 766 769 {ECO:0000244|PDB:3UGM}.
TURN 770 773 {ECO:0000244|PDB:3UGM}.
HELIX 778 788 {ECO:0000244|PDB:3UGM}.
HELIX 800 807 {ECO:0000244|PDB:3UGM}.
HELIX 812 826 {ECO:0000244|PDB:3UGM}.
STRAND 829 831 {ECO:0000244|PDB:3UGM}.
HELIX 835 841 {ECO:0000244|PDB:3UGM}.
HELIX 846 854 {ECO:0000244|PDB:3UGM}.
TURN 855 859 {ECO:0000244|PDB:3UGM}.
TURN 861 863 {ECO:0000244|PDB:3UGM}.
HELIX 868 875 {ECO:0000244|PDB:3UGM}.
HELIX 880 897 {ECO:0000244|PDB:3UGM}.
HELIX 902 909 {ECO:0000244|PDB:3UGM}.
HELIX 914 929 {ECO:0000244|PDB:3UGM}.
HELIX 936 943 {ECO:0000244|PDB:3UGM}.
HELIX 948 958 {ECO:0000244|PDB:3UGM}.
HELIX 960 964 {ECO:0000244|PDB:3UGM}.
HELIX 970 976 {ECO:0000244|PDB:3UGM}.
STRAND 979 981 {ECO:0000244|PDB:3UGM}.
TURN 982 984 {ECO:0000244|PDB:3UGM}.
HELIX 985 997 {ECO:0000244|PDB:3UGM}.
TURN 998 1000 {ECO:0000244|PDB:3UGM}.
HELIX 1004 1011 {ECO:0000244|PDB:3UGM}.
TURN 1012 1014 {ECO:0000244|PDB:3UGM}.
HELIX 1015 1023 {ECO:0000244|PDB:3UGM}.
HELIX 1026 1031 {ECO:0000244|PDB:3UGM}.
TURN 1037 1039 {ECO:0000244|PDB:3UGM}.
STRAND 1040 1042 {ECO:0000244|PDB:3UGM}.
SEQUENCE 1373 AA; 143535 MW; C96C8A8A862A8217 CRC64;
MDPIRSRTPS PARELLPGPQ PDRVQPTADR GGAPPAGGPL DGLPARRTMS RTRLPSPPAP
SPAFSAGSFS DLLRQFDPSL LDTSLLDSMP AVGTPHTAAA PAECDEVQSG LRAADDPPPT
VRVAVTAARP PRAKPAPRRR AAQPSDASPA AQVDLRTLGY SQQQQEKIKP KVGSTVAQHH
EALVGHGFTH AHIVALSRHP AALGTVAVKY QDMIAALPEA THEDIVGVGK QWSGARALEA
LLTVAGELRG PPLQLDTGQL VKIAKRGGVT AVEAVHASRN ALTGAPLNLT PAQVVAIASN
NGGKQALETV QRLLPVLCQA HGLTPAQVVA IASHDGGKQA LETMQRLLPV LCQAHGLPPD
QVVAIASNIG GKQALETVQR LLPVLCQAHG LTPDQVVAIA SHGGGKQALE TVQRLLPVLC
QAHGLTPDQV VAIASHDGGK QALETVQRLL PVLCQAHGLT PDQVVAIASN GGGKQALETV
QRLLPVLCQA HGLTPDQVVA IASNGGKQAL ETVQRLLPVL CQAHGLTPDQ VVAIASHDGG
KQALETVQRL LPVLCQTHGL TPAQVVAIAS HDGGKQALET VQQLLPVLCQ AHGLTPDQVV
AIASNIGGKQ ALATVQRLLP VLCQAHGLTP DQVVAIASNG GGKQALETVQ RLLPVLCQAH
GLTPDQVVAI ASNGGGKQAL ETVQRLLPVL CQAHGLTQVQ VVAIASNIGG KQALETVQRL
LPVLCQAHGL TPAQVVAIAS HDGGKQALET VQRLLPVLCQ AHGLTPDQVV AIASNGGGKQ
ALETVQRLLP VLCQAHGLTQ EQVVAIASNN GGKQALETVQ RLLPVLCQAH GLTPDQVVAI
ASNGGGKQAL ETVQRLLPVL CQAHGLTPAQ VVAIASNIGG KQALETVQRL LPVLCQDHGL
TLAQVVAIAS NIGGKQALET VQRLLPVLCQ AHGLTQDQVV AIASNIGGKQ ALETVQRLLP
VLCQDHGLTP DQVVAIASNI GGKQALETVQ RLLPVLCQDH GLTLDQVVAI ASNGGKQALE
TVQRLLPVLC QDHGLTPDQV VAIASNSGGK QALETVQRLL PVLCQDHGLT PNQVVAIASN
GGKQALESIV AQLSRPDPAL AALTNDHLVA LACLGGRPAM DAVKKGLPHA PELIRRVNRR
IGERTSHRVA DYAQVVRVLE FFQCHSHPAY AFDEAMTQFG MSRNGLVQLF RRVGVTELEA
RGGTLPPASQ RWDRILQASG MKRAKPSPTS AQTPDQASLH AFADSLERDL DAPSPMHEGD
QTGASSRKRS RSDRAVTGPS AQHSFEVRVP EQRDALHLPL SWRVKRPRTR IGGGLPDPGT
PIAADLAASS TVMWEQDAAP FAGAADDFPA FNEEELAWLM ELLPQSGSVG GTI


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