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TBP-associated factor 1, isoform E (EC 2.3.1.48) (EC 2.7.11.-)

 A0A0B4K602_DROME        Unreviewed;      2172 AA.
A0A0B4K602;
01-APR-2015, integrated into UniProtKB/TrEMBL.
01-APR-2015, sequence version 1.
22-NOV-2017, entry version 25.
SubName: Full=TBP-associated factor 1, isoform E {ECO:0000313|EMBL:AFH06271.1};
EC=2.3.1.48 {ECO:0000313|EMBL:AFH06271.1};
EC=2.7.11.- {ECO:0000313|EMBL:AFH06271.1};
Name=Taf1 {ECO:0000313|EMBL:AFH06271.1,
ECO:0000313|FlyBase:FBgn0010355};
Synonyms=230 {ECO:0000313|EMBL:AFH06271.1},
BG:DS00004.13 {ECO:0000313|EMBL:AFH06271.1},
cel {ECO:0000313|EMBL:AFH06271.1}, cell {ECO:0000313|EMBL:AFH06271.1},
d230 {ECO:0000313|EMBL:AFH06271.1},
Dmel\CG17603 {ECO:0000313|EMBL:AFH06271.1},
dmTAF1 {ECO:0000313|EMBL:AFH06271.1},
dmTAF[[II]]230 {ECO:0000313|EMBL:AFH06271.1},
dTAF1 {ECO:0000313|EMBL:AFH06271.1},
dTAF230 {ECO:0000313|EMBL:AFH06271.1},
dTAF250 {ECO:0000313|EMBL:AFH06271.1},
dTAF[[II]]230 {ECO:0000313|EMBL:AFH06271.1},
dTAF[[II]]250 {ECO:0000313|EMBL:AFH06271.1},
dTAFII250 {ECO:0000313|EMBL:AFH06271.1},
EfW1 {ECO:0000313|EMBL:AFH06271.1},
l(3)84Ab {ECO:0000313|EMBL:AFH06271.1},
p230 {ECO:0000313|EMBL:AFH06271.1},
SR3-5 {ECO:0000313|EMBL:AFH06271.1},
TAF {ECO:0000313|EMBL:AFH06271.1}, TAF1 {ECO:0000313|EMBL:AFH06271.1},
Taf1p {ECO:0000313|EMBL:AFH06271.1},
TAF200 {ECO:0000313|EMBL:AFH06271.1},
Taf200 {ECO:0000313|EMBL:AFH06271.1},
TAF230 {ECO:0000313|EMBL:AFH06271.1},
Taf230 {ECO:0000313|EMBL:AFH06271.1},
TAF250 {ECO:0000313|EMBL:AFH06271.1},
Taf250 {ECO:0000313|EMBL:AFH06271.1},
TAF[[II]] {ECO:0000313|EMBL:AFH06271.1},
TAF[[II]]230 {ECO:0000313|EMBL:AFH06271.1},
TAF[[II]]250 {ECO:0000313|EMBL:AFH06271.1},
Taf[[II]]250 {ECO:0000313|EMBL:AFH06271.1},
TAF[II]250 {ECO:0000313|EMBL:AFH06271.1},
TAFII-250 {ECO:0000313|EMBL:AFH06271.1},
TAFII250 {ECO:0000313|EMBL:AFH06271.1},
TFIID {ECO:0000313|EMBL:AFH06271.1},
TFIID TAF250 {ECO:0000313|EMBL:AFH06271.1};
ORFNames=CG17603 {ECO:0000313|EMBL:AFH06271.1,
ECO:0000313|FlyBase:FBgn0010355},
Dmel_CG17603 {ECO:0000313|EMBL:AFH06271.1};
Drosophila melanogaster (Fruit fly).
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha;
Ephydroidea; Drosophilidae; Drosophila; Sophophora.
NCBI_TaxID=7227 {ECO:0000313|EMBL:AFH06271.1, ECO:0000313|Proteomes:UP000000803};
[1] {ECO:0000313|EMBL:AFH06271.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=10731132; DOI=10.1126/science.287.5461.2185;
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D.,
Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F.,
George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N.,
Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X.,
Brandon R.C., Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D.,
Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Gabor G.L.,
Abril J.F., Agbayani A., An H.J., Andrews-Pfannkoch C., Baldwin D.,
Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M.,
Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S.,
Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P.,
Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I.,
Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P.,
de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M.,
Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P.,
Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W.,
Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K.,
Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M.,
Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J.,
Hostin D., Houston K.A., Howland T.J., Wei M.H., Ibegwam C.,
Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A.,
Kimmel B.E., Kodira C.D., Kraft C., Kravitz S., Kulp D., Lai Z.,
Lasko P., Lei Y., Levitsky A.A., Li J., Li Z., Liang Y., Lin X.,
Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D.,
Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A.,
Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L.,
Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M.,
Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G.,
Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H.,
Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.,
Spier E., Spradling A.C., Stapleton M., Strong R., Sun E.,
Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X.,
Wang Z.Y., Wassarman D.A., Weinstock G.M., Weissenbach J.,
Williams S.M., WoodageT, Worley K.C., Wu D., Yang S., Yao Q.A., Ye J.,
Yeh R.F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L.,
Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S., Zhu X., Smith H.O.,
Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.;
"The genome sequence of Drosophila melanogaster.";
Science 287:2185-2195(2000).
[2] {ECO:0000313|EMBL:AFH06271.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537568;
Celniker S.E., Wheeler D.A., Kronmiller B., Carlson J.W., Halpern A.,
Patel S., Adams M., Champe M., Dugan S.P., Frise E., Hodgson A.,
George R.A., Hoskins R.A., Laverty T., Muzny D.M., Nelson C.R.,
Pacleb J.M., Park S., Pfeiffer B.D., Richards S., Sodergren E.J.,
Svirskas R., Tabor P.E., Wan K., Stapleton M., Sutton G.G., Venter C.,
Weinstock G., Scherer S.E., Myers E.W., Gibbs R.A., Rubin G.M.;
"Finishing a whole-genome shotgun: release 3 of the Drosophila
melanogaster euchromatic genome sequence.";
Genome Biol. 3:RESEARCH0079-RESEARCH0079(2002).
[3] {ECO:0000313|EMBL:AFH06271.1, ECO:0000313|Proteomes:UP000000803}
GENOME REANNOTATION.
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537572; DOI=10.1186/gb-2002-3-12-research0083;
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S.,
Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E.,
Smith C.D., Tupy J.L., Whitfied E.J., Bayraktaroglu L., Berman B.P.,
Bettencourt B.R., Celniker S.E., de Grey A.D., Drysdale R.A.,
Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q.,
Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M.,
Lewis S.E.;
"Annotation of the Drosophila melanogaster euchromatic genome: a
systematic review.";
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002).
[4] {ECO:0000313|EMBL:AFH06271.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537573;
Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J., Svirskas R.,
Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M.,
Ashburner M., Celniker S.E.;
"The transposable elements of the Drosophila melanogaster euchromatin:
a genomics perspective.";
Genome Biol. 3:RESEARCH0084.1-RESEARCH0084.20(2002).
[5] {ECO:0000313|EMBL:AFH06271.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537574;
Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A.,
Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G.,
Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M.,
Karpen G.H.;
"Heterochromatic sequences in a Drosophila whole-genome shotgun
assembly.";
Genome Biol. 3:RESEARCH0085-RESEARCH0085(2002).
[6] {ECO:0000313|EMBL:AFH06271.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=16110336; DOI=10.1371/journal.pcbi.0010022;
Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D.,
Ashburner M., Anxolabehere D.;
"Combined evidence annotation of transposable elements in genome
sequences.";
PLoS Comput. Biol. 1:166-175(2005).
[7] {ECO:0000313|EMBL:AFH06271.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569856; DOI=10.1126/science.1139815;
Smith C.D., Shu S., Mungall C.J., Karpen G.H.;
"The Release 5.1 annotation of Drosophila melanogaster
heterochromatin.";
Science 316:1586-1591(2007).
[8] {ECO:0000313|EMBL:AFH06271.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569867; DOI=10.1126/science.1139816;
Hoskins R.A., Carlson J.W., Kennedy C., Acevedo D., Evans-Holm M.,
Frise E., Wan K.H., Park S., Mendez-Lago M., Rossi F., Villasante A.,
Dimitri P., Karpen G.H., Celniker S.E.;
"Sequence finishing and mapping of Drosophila melanogaster
heterochromatin.";
Science 316:1625-1628(2007).
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EMBL; AE014297; AFH06271.1; -; Genomic_DNA.
RefSeq; NP_001246952.1; NM_001260023.1.
UniGene; Dm.7380; -.
SMR; A0A0B4K602; -.
PaxDb; A0A0B4K602; -.
EnsemblMetazoa; FBtr0304903; FBpp0293442; FBgn0010355.
GeneID; 40813; -.
CTD; 6872; -.
FlyBase; FBgn0010355; Taf1.
eggNOG; KOG0008; Eukaryota.
eggNOG; COG5076; LUCA.
eggNOG; COG5179; LUCA.
GeneTree; ENSGT00390000012659; -.
OMA; PTHMGPM; -.
OrthoDB; EOG091G00MO; -.
PhylomeDB; A0A0B4K602; -.
GenomeRNAi; 40813; -.
Proteomes; UP000000803; Chromosome 3R.
ExpressionAtlas; A0A0B4K602; differential.
GO; GO:0005669; C:transcription factor TFIID complex; IEA:InterPro.
GO; GO:0003677; F:DNA binding; IEA:InterPro.
GO; GO:0004402; F:histone acetyltransferase activity; IEA:UniProtKB-EC.
GO; GO:0006352; P:DNA-templated transcription, initiation; IEA:InterPro.
GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro.
Gene3D; 1.10.1100.10; -; 1.
Gene3D; 1.20.920.10; -; 2.
InterPro; IPR017956; AT_hook_DNA-bd_motif.
InterPro; IPR001487; Bromodomain.
InterPro; IPR036427; Bromodomain-like_sf.
InterPro; IPR018359; Bromodomain_CS.
InterPro; IPR011177; TAF1_animal.
InterPro; IPR009067; TAF_II_230-bd.
InterPro; IPR036741; TAFII-230_TBP-bd_sf.
InterPro; IPR022591; TFIID_sub1_DUF3591.
Pfam; PF00439; Bromodomain; 2.
Pfam; PF12157; DUF3591; 1.
Pfam; PF09247; TBP-binding; 1.
PIRSF; PIRSF003047; TAF1_animal; 2.
PRINTS; PR00503; BROMODOMAIN.
SMART; SM00384; AT_hook; 2.
SMART; SM00297; BROMO; 2.
SUPFAM; SSF47055; SSF47055; 1.
SUPFAM; SSF47370; SSF47370; 2.
PROSITE; PS00633; BROMODOMAIN_1; 2.
PROSITE; PS50014; BROMODOMAIN_2; 2.
1: Evidence at protein level;
Acyltransferase {ECO:0000313|EMBL:AFH06271.1};
Bromodomain {ECO:0000256|PROSITE-ProRule:PRU00035,
ECO:0000256|SAAS:SAAS00735317}; Coiled coil {ECO:0000256|SAM:Coils};
Complete proteome {ECO:0000313|Proteomes:UP000000803};
Proteomics identification {ECO:0000213|PeptideAtlas:A0A0B4K602};
Reference proteome {ECO:0000313|Proteomes:UP000000803};
Transferase {ECO:0000313|EMBL:AFH06271.1}.
DOMAIN 1530 1600 Bromo. {ECO:0000259|PROSITE:PS50014}.
DOMAIN 1652 1722 Bromo. {ECO:0000259|PROSITE:PS50014}.
COILED 1178 1218 {ECO:0000256|SAM:Coils}.
COILED 1302 1336 {ECO:0000256|SAM:Coils}.
SEQUENCE 2172 AA; 244125 MW; CEF2AFE054DDF974 CRC64;
MEMESDNSDD EGSIGNGLDL TGILFGNIDS EGRLLQDDDG EGRGGTGFDA ELRENIGSLS
KLGLDSMLLE VIDLKEAEPP SDDEEEEDAR PSAVSASEGM SAFDALKAGV KREDGAVKAQ
DDAIDYSDIT ELSEDCPRTP PEETSTYDDL EDAIPASKVE AKLREDIAQI FKGLCNSCQS
DTITFAPLRL GSDLLLYREN NSHFVAAKDD KELMPPPSAP MRSGSGGGIE EPAKSNDASS
PSDDSKSTDS KDADRKLDTP LADILPSKYQ NVDVRELFPD FRPQKVLRFS RLFGPGKPTS
LPQIWRHVRK RRRKRNQSRD QKTTNTGGSD SPSDTEEPRK RGFSLHYAAE PTPAECMSDD
EDKLLGDFNS EDVRPEGPDN GENSDQKPKV ADWRFGPAQI WYDMLEVPDS GEGFNYGFKT
KAASTSSQPQ LKDERRVKSP EDDVEDPSIA DDAFLMVSQL HWEDDVVWDG NDIKAKVLQK
LNSKTNAAGW LPSSGSRTAG AFSQPGKPSM PVGSGSSKQG SGASSKKAQQ NAQAKPAEAP
DDTWYSLFPV ENEELIYYKW EDEVIWDAQQ VSKVPKPKVL TLDPNDENII LGIPDDIDPS
KINKSTGPPP KIKIPHPHVK KSKILLGKAG VINVLAEDTP PPPPKSPDRD PFNISNDTYY
TPKTEPTLRL KVGGNLIQHS TPVVELRAPF VPTHMGPMKL RAFHRPPLKK YSHGPMAQSI
PHPVFPLLKT IAKKAKQREV ERIASGGGDV FFMRNPEDLS GRDGDIVLAE FCEEHPPLIN
QVGMCSKIKN YYKRKAEKDS GPQDFVYGEV AFAHTSPFLG ILHPGQCIQA IENNMYRAPI
YPHKMAHNDF LVIRTRNNYW IRSVNSIYTV GQECPLYEVP GPNSKRANNF TRDFLQVFIY
RLFWKSRDNP RRIRMDDIKQ AFPAHSESSI RKRLKQCADF KRTGMDSNWW VIKPEFRLPS
EEEIRAMVSP EQCCAYFSMI AAEQRLKDAG YGEKFLFAPQ EDDDEEAQLK LDDEVKVAPW
NTTRAYIQAM RGKCLLQLSG PADPTGCGEG FSYVRVPNKP TQTKEEQESQ PKRSVTGTDA
DLRRLPLQRA KELLRQFKVP EEEIKKLSRW EVIDVVRTLS TEKAKAGEEG MDKFSRGNRF
SIAEHQERYK EECQRIFDLQ NRVLASSEVL STDEAESSAS EESDLEELGK NLENMLSNKK
TSTQLSRERE ELERQELLRQ LDEEHGGPSG SGGAKGAKGK DDPGQQMLAT NNQGRILRIT
RTFRGNDGKE YTRVETVRRQ PVIDAYIKIR TTKDEQFIKQ FATLDEQQKE EMKREKRRIQ
EQLRRIKRNQ ERERLAQLAQ NQKLQPGGMP TSLGDPKSSG GHSHKERDSG YKEVSPSRKK
FKLKPDLKLK CGACGQVGHM RTNKACPLYS GMQSSLSQSN PSLADDFDEQ SEKEMTMDDD
DLVNVDGTKV TLSSKILKRH GGDDGKRRSG SSSGFTLKVP RDAMGKKKRR VGGDLHCDYL
QRHNKTANRR RTDPVVVLSS ILEIIHNELR SMPDVSPFLF PVSAKKVPDY YRVVTKPMDL
QTMREYIRQR RYTSREMFLE DLKQIVDNSL IYNGPQSAYT LAAQRMFSSC FELLAEREDK
LMRLEKAINP LLDDDDQVAL SFIFDKLHSQ IKQLPESWPF LKPVNKKQVK DYYTVIKRPM
DLETIGKNIE AHRYHSRAEY LADIELIATN CEQYNGSDTR YTKFSKKILE YAQTQLIEFS
EHCGQLENNI AKTQERAREN APEFDEAWGN DDYNFDRGSR ASSPGDDYID VEGHGGHASS
SNSIHRSMGA EAGSSHTAPA VRKPAPPGPG EVKRGRGRPR KQRDPVEEVK SQNPVKRGRG
RPRKDSLASN MSHTQAYFLD EDLQCSTDDE DDDEEEDFQE VSEDENNAAS ILDQGERINA
PADAMDGMFD PKNIKTEIDL EAHQMAEEPI GEDDSQQVAE AMVQLSGVGG YYAQQQQDES
MDVDPNYDPS DFLAMHKQRQ SLGEPSSLQG AFTNFLSHEQ DDNGPYNPAE ASTSAASGAD
LGMDASMAMQ MAPEMPVNTM NNGMGIDDDL DISESDEEDD GSRVRIKKEV FDDGDYALQH
QQMGQAASQS QIYMVDSSNE PTTLDYQQPP QLDFQQVQEM EQLQHQVMPP MQSEQLQQQQ
TPQGDNDYAW TF


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