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TIA1 cytotoxic granule associated RNA binding protein

 M3WS96_FELCA            Unreviewed;       385 AA.
M3WS96;
01-MAY-2013, integrated into UniProtKB/TrEMBL.
01-MAY-2013, sequence version 1.
25-OCT-2017, entry version 37.
SubName: Full=TIA1 cytotoxic granule associated RNA binding protein {ECO:0000313|Ensembl:ENSFCAP00000017232};
Name=TIA1 {ECO:0000313|Ensembl:ENSFCAP00000017232};
Felis catus (Cat) (Felis silvestris catus).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae;
Felinae; Felis.
NCBI_TaxID=9685 {ECO:0000313|Ensembl:ENSFCAP00000017232, ECO:0000313|Proteomes:UP000011712};
[1] {ECO:0000313|Ensembl:ENSFCAP00000017232, ECO:0000313|Proteomes:UP000011712}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Abyssinian {ECO:0000313|Ensembl:ENSFCAP00000017232,
ECO:0000313|Proteomes:UP000011712};
PubMed=17975172; DOI=10.1101/gr.6380007;
Pontius J.U., Mullikin J.C., Smith D.R., Lindblad-Toh K., Gnerre S.,
Clamp M., Chang J., Stephens R., Neelam B., Volfovsky N.,
Schaffer A.A., Agarwala R., Narfstrom K., Murphy W.J., Giger U.,
Roca A.L., Antunes A., Menotti-Raymond M., Yuhki N.,
Pecon-Slattery J., Johnson W.E., Bourque G., Tesler G., O'Brien S.J.;
"Initial sequence and comparative analysis of the cat genome.";
Genome Res. 17:1675-1689(2007).
[2] {ECO:0000313|Ensembl:ENSFCAP00000017232}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Abyssinian {ECO:0000313|Ensembl:ENSFCAP00000017232};
Hillier L.W., Warren W., Obrien S., Wilson R.K.;
"Sequence assembly of the Felis catus genome version 6.2.";
Submitted (SEP-2011) to the EMBL/GenBank/DDBJ databases.
[3] {ECO:0000313|Ensembl:ENSFCAP00000017232}
IDENTIFICATION.
STRAIN=breed Abyssinian {ECO:0000313|Ensembl:ENSFCAP00000017232};
Ensembl;
Submitted (MAR-2013) to UniProtKB.
-!- CAUTION: The sequence shown here is derived from an Ensembl
automatic analysis pipeline and should be considered as
preliminary data. {ECO:0000313|Ensembl:ENSFCAP00000017232}.
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EMBL; AANG02143084; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; AANG02143085; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; AANG02143086; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; AANG02143087; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; AANG02143089; -; NOT_ANNOTATED_CDS; Genomic_DNA.
STRING; 9685.ENSFCAP00000017232; -.
Ensembl; ENSFCAT00000022562; ENSFCAP00000017232; ENSFCAG00000023732.
eggNOG; KOG0148; Eukaryota.
eggNOG; ENOG410XQ8U; LUCA.
GeneTree; ENSGT00870000136413; -.
InParanoid; M3WS96; -.
OMA; YEHRHAA; -.
OrthoDB; EOG091G0FH8; -.
Proteomes; UP000011712; Chromosome A3.
Bgee; ENSFCAG00000023732; -.
GO; GO:0010494; C:cytoplasmic stress granule; IEA:Ensembl.
GO; GO:0005829; C:cytosol; IEA:Ensembl.
GO; GO:0097165; C:nuclear stress granule; IEA:Ensembl.
GO; GO:0005654; C:nucleoplasm; IEA:Ensembl.
GO; GO:0017091; F:AU-rich element binding; IEA:Ensembl.
GO; GO:0042036; P:negative regulation of cytokine biosynthetic process; IEA:Ensembl.
GO; GO:0017148; P:negative regulation of translation; IEA:Ensembl.
GO; GO:1903608; P:protein localization to cytoplasmic stress granule; IEA:Ensembl.
GO; GO:0048024; P:regulation of mRNA splicing, via spliceosome; IEA:Ensembl.
CDD; cd12618; RRM2_TIA1; 1.
CDD; cd12621; RRM3_TIA1; 1.
InterPro; IPR035979; RBD_domain_sf.
InterPro; IPR000504; RRM_dom.
InterPro; IPR003954; RRM_dom_euk.
InterPro; IPR034830; TIA1_RRM2.
InterPro; IPR034832; TIA1_RRM3.
Pfam; PF00076; RRM_1; 3.
SMART; SM00360; RRM; 3.
SMART; SM00361; RRM_1; 3.
SUPFAM; SSF54928; SSF54928; 3.
PROSITE; PS50102; RRM; 3.
4: Predicted;
Complete proteome {ECO:0000313|Proteomes:UP000011712};
Reference proteome {ECO:0000313|Proteomes:UP000011712};
RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00176,
ECO:0000256|SAAS:SAAS00572889}.
DOMAIN 6 82 RRM. {ECO:0000259|PROSITE:PS50102}.
DOMAIN 105 183 RRM. {ECO:0000259|PROSITE:PS50102}.
DOMAIN 213 285 RRM. {ECO:0000259|PROSITE:PS50102}.
SEQUENCE 385 AA; 42823 MW; C5EFE93E5EFE5221 CRC64;
KPMQKKQIYV GNLSRDVTEA LILQLFSQIG PCKNCKMIMD TAGNDPYCFV EFYEHRHAAA
ALAAMNGRKI MGKEVKVNWA TTPSSQKKDT SSSTVVSTQR SQDHFHVFVG DLSPEITTED
IKAAFAPFGR ISDARVVKDM ATGKSKGYGF VSFFNKWDAE NAIQQMGGQW LGGRQIRTNW
ATRKPPAPKS TYESNTKQLS YDEVVNQSSP SNCTVYCGGV TSGLTEQLMR QTFSPFGQIM
EIRVFPDKGY SFVRFNSHES AAHAIVSVNG TTIEGHVVKC YWGKETLDMI NPVQQQNQIG
YPQAYGQWGQ WYGNAQQIGQ YMPNGWQVPA YGMYGQAWNQ QGFNQTQSSA PWMGPNYGVQ
PPPGQNGSML PNQPAGYRVA GYETQ


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