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Telomere repeat-binding protein 2 (Protein TRF-LIKE 1)

 TRP2_ARATH              Reviewed;         553 AA.
Q9SNB9; Q2V3Q5; Q3L8D5; Q700E9; Q8RX21; Q8W4L7;
18-MAY-2010, integrated into UniProtKB/Swiss-Prot.
01-MAY-2000, sequence version 1.
23-MAY-2018, entry version 126.
RecName: Full=Telomere repeat-binding protein 2;
AltName: Full=Protein TRF-LIKE 1;
Name=TRP2; Synonyms=TRFL1, TRP4; OrderedLocusNames=At3g46590;
ORFNames=F12A12.110;
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=11130713; DOI=10.1038/35048706;
Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M.,
Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B.,
Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P.,
De Simone V., Choisne N., Artiguenave F., Robert C., Brottier P.,
Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F.,
Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V.,
Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S.,
Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G.,
Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B.,
Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G.,
Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J.,
Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D.,
Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
Monfort A., Argiriou A., Flores M., Liguori R., Vitale D.,
Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W.,
Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J.,
Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P.,
Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S.,
Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V.,
Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C.,
Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E.,
Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y.,
Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A.,
Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
Watanabe A., Yamada M., Yasuda M., Tabata S.;
"Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana.";
Nature 408:820-822(2000).
[2]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
PubMed=27862469; DOI=10.1111/tpj.13415;
Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
Town C.D.;
"Araport11: a complete reannotation of the Arabidopsis thaliana
reference genome.";
Plant J. 89:789-804(2017).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
STRAIN=cv. Columbia;
PubMed=14593172; DOI=10.1126/science.1088305;
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J.,
Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F.,
Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.,
Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J.,
Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y.,
Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P.,
Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F.,
Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M.,
Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J.,
Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T.,
Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y.,
Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis
genome.";
Science 302:842-846(2003).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
PubMed=15208423; DOI=10.1104/pp.104.042176;
Gong W., Shen Y.-P., Ma L.-G., Pan Y., Du Y.-L., Wang D.-H.,
Yang J.-Y., Hu L.-D., Liu X.-F., Dong C.-X., Ma L., Chen Y.-H.,
Yang X.-Y., Gao Y., Zhu D., Tan X., Mu J.-Y., Zhang D.-B., Liu Y.-L.,
Dinesh-Kumar S.P., Li Y., Wang X.-P., Gu H.-Y., Qu L.-J., Bai S.-N.,
Lu Y.-T., Li J.-Y., Zhao J.-D., Zuo J., Huang H., Deng X.-W.,
Zhu Y.-X.;
"Genome-wide ORFeome cloning and analysis of Arabidopsis transcription
factor genes.";
Plant Physiol. 135:773-782(2004).
[5]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 3).
Chen C.M., Wang C.T., Kao Y.-H., Chang G.-D., Ho C.-H., Lee F.-M.,
Hseu M.-J.;
"Functional redundancy of the duplex telomeric DNA-binding proteins in
Arabidopsis.";
Bot. Bull. Acad. Sin. 46:315-324(2005).
[6]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
de los Reyes C., Quan R., Chen H., Bautista V., Kim C.J., Ecker J.R.;
"Arabidopsis ORF clones.";
Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases.
[7]
GENE FAMILY, DNA-BINDING, TISSUE SPECIFICITY, SUBUNIT, AND DISRUPTION
PHENOTYPE.
PubMed=15364931; DOI=10.1074/jbc.M407938200;
Karamysheva Z.N., Surovtseva Y.V., Vespa L., Shakirov E.V.,
Shippen D.E.;
"A C-terminal Myb extension domain defines a novel family of double-
strand telomeric DNA-binding proteins in Arabidopsis.";
J. Biol. Chem. 279:47799-47807(2004).
[8]
FUNCTION, DNA-BINDING, AND TISSUE SPECIFICITY.
PubMed=15688221; DOI=10.1007/s00438-004-1096-3;
Hwang M.G., Kim K., Lee W.K., Cho M.H.;
"AtTBP2 and AtTRP2 in Arabidopsis encode proteins that bind plant
telomeric DNA and induce DNA bending in vitro.";
Mol. Genet. Genomics 273:66-75(2005).
[9]
GENE FAMILY.
PubMed=16463103; DOI=10.1007/s11103-005-2910-y;
Chen Y., Yang X., He K., Liu M., Li J., Gao Z., Lin Z., Zhang Y.,
Wang X., Qiu X., Shen Y., Zhang L., Deng X., Luo J., Deng X.-W.,
Chen Z., Gu H., Qu L.-J.;
"The MYB transcription factor superfamily of Arabidopsis: expression
analysis and phylogenetic comparison with the rice MYB family.";
Plant Mol. Biol. 60:107-124(2006).
[10]
INTERACTION WITH SNL1.
PubMed=19962994; DOI=10.1016/j.jmb.2009.11.065;
Bowen A.J., Gonzalez D., Mullins J.G., Bhatt A.M., Martinez A.,
Conlan R.S.;
"PAH-domain-specific interactions of the Arabidopsis transcription
coregulator SIN3-LIKE1 (SNL1) with telomere-binding protein 1 and
ALWAYS EARLY2 Myb-DNA binding factors.";
J. Mol. Biol. 395:937-949(2010).
-!- FUNCTION: Binds specifically to the plant telomeric double-
stranded DNA sequences. At least 2 repeats of telomeric sequences
are required for binding. Induces DNA bending.
{ECO:0000269|PubMed:15688221}.
-!- SUBUNIT: Homodimer and heterodimer with TRP1. Interacts with SNL1.
{ECO:0000269|PubMed:15364931, ECO:0000269|PubMed:19962994}.
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-
ProRule:PRU00625}.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=3;
Name=1;
IsoId=Q9SNB9-1; Sequence=Displayed;
Name=2;
IsoId=Q9SNB9-2; Sequence=VSP_039136;
Name=3;
IsoId=Q9SNB9-3; Sequence=VSP_039137;
-!- TISSUE SPECIFICITY: Expressed ubiquitously. Highest expression in
flowers and leaves. {ECO:0000269|PubMed:15364931,
ECO:0000269|PubMed:15688221}.
-!- DOMAIN: The Myb-extension domain (509-540) is necessary and
sufficient for telomere binding.
-!- DISRUPTION PHENOTYPE: No visible phenotype, probably due to
redundancy. {ECO:0000269|PubMed:15364931}.
-!- SEQUENCE CAUTION:
Sequence=AAL32567.1; Type=Miscellaneous discrepancy; Note=Chimera. Chimera of genomic DNA and cDNA.; Evidence={ECO:0000305};
-----------------------------------------------------------------------
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Distributed under the Creative Commons Attribution-NoDerivs License
-----------------------------------------------------------------------
EMBL; AL133314; CAB62329.1; -; Genomic_DNA.
EMBL; CP002686; AEE78175.1; -; Genomic_DNA.
EMBL; CP002686; AEE78176.1; -; Genomic_DNA.
EMBL; CP002686; AEE78177.1; -; Genomic_DNA.
EMBL; AK229705; BAF01544.1; -; mRNA.
EMBL; AY062489; AAL32567.1; ALT_SEQ; mRNA.
EMBL; AY090966; AAM14002.1; -; mRNA.
EMBL; AY519541; AAS10011.1; -; mRNA.
EMBL; AY568647; AAS79537.1; -; mRNA.
EMBL; AJ630475; CAG25848.1; -; mRNA.
EMBL; AY395985; AAR28946.1; -; mRNA.
EMBL; BT033142; ACF40322.1; -; mRNA.
PIR; T45596; T45596.
RefSeq; NP_001030821.1; NM_001035744.2. [Q9SNB9-1]
RefSeq; NP_001030822.2; NM_001035745.2. [Q9SNB9-3]
RefSeq; NP_190243.2; NM_114526.3. [Q9SNB9-2]
UniGene; At.25047; -.
ProteinModelPortal; Q9SNB9; -.
SMR; Q9SNB9; -.
BioGrid; 9132; 3.
IntAct; Q9SNB9; 1.
STRING; 3702.AT3G46590.2; -.
PaxDb; Q9SNB9; -.
PRIDE; Q9SNB9; -.
EnsemblPlants; AT3G46590.1; AT3G46590.1; AT3G46590. [Q9SNB9-2]
EnsemblPlants; AT3G46590.2; AT3G46590.2; AT3G46590. [Q9SNB9-1]
EnsemblPlants; AT3G46590.3; AT3G46590.3; AT3G46590. [Q9SNB9-3]
GeneID; 823812; -.
Gramene; AT3G46590.1; AT3G46590.1; AT3G46590. [Q9SNB9-2]
Gramene; AT3G46590.2; AT3G46590.2; AT3G46590. [Q9SNB9-1]
Gramene; AT3G46590.3; AT3G46590.3; AT3G46590. [Q9SNB9-3]
KEGG; ath:AT3G46590; -.
Araport; AT3G46590; -.
TAIR; locus:2075145; AT3G46590.
eggNOG; ENOG410IVC2; Eukaryota.
eggNOG; ENOG4111PQU; LUCA.
HOGENOM; HOG000239616; -.
InParanoid; Q9SNB9; -.
OMA; STEVGAC; -.
OrthoDB; EOG093606QV; -.
PhylomeDB; Q9SNB9; -.
PRO; PR:Q9SNB9; -.
Proteomes; UP000006548; Chromosome 3.
ExpressionAtlas; Q9SNB9; baseline and differential.
Genevisible; Q9SNB9; AT.
GO; GO:0000783; C:nuclear telomere cap complex; IBA:GO_Central.
GO; GO:0008301; F:DNA binding, bending; IDA:TAIR.
GO; GO:0003691; F:double-stranded telomeric DNA binding; IBA:GO_Central.
GO; GO:0042162; F:telomeric DNA binding; IDA:TAIR.
GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW.
GO; GO:0009737; P:response to abscisic acid; IEP:TAIR.
GO; GO:0046686; P:response to cadmium ion; IEP:TAIR.
GO; GO:0009723; P:response to ethylene; IEP:TAIR.
GO; GO:0009739; P:response to gibberellin; IEP:TAIR.
GO; GO:0009753; P:response to jasmonic acid; IEP:TAIR.
GO; GO:0009751; P:response to salicylic acid; IEP:TAIR.
GO; GO:0031627; P:telomeric loop formation; IBA:GO_Central.
GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW.
InterPro; IPR009057; Homeobox-like_sf.
InterPro; IPR017930; Myb_dom.
InterPro; IPR001005; SANT/Myb.
InterPro; IPR029071; Ubiquitin-like_domsf.
InterPro; IPR000626; Ubiquitin_dom.
SMART; SM00717; SANT; 1.
SUPFAM; SSF46689; SSF46689; 1.
SUPFAM; SSF54236; SSF54236; 1.
PROSITE; PS51294; HTH_MYB; 1.
PROSITE; PS50053; UBIQUITIN_2; 1.
1: Evidence at protein level;
Alternative splicing; Complete proteome; DNA-binding; Nucleus;
Reference proteome; Transcription; Transcription regulation.
CHAIN 1 553 Telomere repeat-binding protein 2.
/FTId=PRO_0000394125.
DOMAIN 285 364 Ubiquitin-like. {ECO:0000255|PROSITE-
ProRule:PRU00214}.
DOMAIN 448 507 HTH myb-type. {ECO:0000255|PROSITE-
ProRule:PRU00625}.
DNA_BIND 476 503 H-T-H motif. {ECO:0000255|PROSITE-
ProRule:PRU00625}.
VAR_SEQ 28 28 Missing (in isoform 2).
{ECO:0000303|PubMed:15208423}.
/FTId=VSP_039136.
VAR_SEQ 210 215 Missing (in isoform 3).
{ECO:0000303|Ref.5}.
/FTId=VSP_039137.
SEQUENCE 553 AA; 61775 MW; 92C4C2D9DB252594 CRC64;
MVSHKVLEFG DDGYKLPAQA RAPRSLRKKR IYEKKIPGDD KMCAIDLLAT VAGSLLLESK
SPVNACLVVQ NTVKNEYPAD ENPVKAVPYS ESPSLFDNGK CGFSSVITNP NHLLVGDKVG
KEVEGFSSLG VSGDVKPDVV ASIGSNSSTE VGACGNGSPN ESRDDVNLFS RNDDDENFSG
YIRTRMTRPV PRIGDRRIRK ILASRHWKGG SKNNTDAKPW YCSKRSYYLH HHQRSYPIKK
RKYFDSVYDS NSDDYRLQGK THKGSRTISS MKSRNASFVS RDHHVKLRIK SFRVPELFVE
IPETATVGSL KRMVMEAVTT ILGDGLRVGL MVQGKKVRDD GKTLLQTGIS EENNHLDSLG
FSLEPSLETT PQPLLSSYLS DHACDDVTLC HDNALDSSHE PEPSPADSFG KLGTSDHSRA
LIPVASAAML APRPPNRKFK RTEQQLAAQR RIRRPFSVTE VEALVQAVEK LGTGRWRDVK
VRAFEDADHR TYVDLKDKWK TLVHTARISP QQRRGEPVPQ ELLDRVLKAH AYWSQHLMHQ
LQTEPPSTQV EAL


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