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Tetraspanin-1 (Tspan-1) (Tetraspan NET-1) (Tetraspanin TM4-C)

 TSN1_HUMAN              Reviewed;         241 AA.
O60635; D3DQ14; O60745; Q5VST0;
01-DEC-2000, integrated into UniProtKB/Swiss-Prot.
01-DEC-2000, sequence version 2.
28-FEB-2018, entry version 136.
RecName: Full=Tetraspanin-1;
Short=Tspan-1;
AltName: Full=Tetraspan NET-1;
AltName: Full=Tetraspanin TM4-C;
Name=TSPAN1;
Homo sapiens (Human).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
NCBI_TaxID=9606;
[1]
NUCLEOTIDE SEQUENCE [MRNA].
PubMed=9714763; DOI=10.1016/S0167-4781(98)00087-6;
Todd S.C., Doctor V.S., Levy S.;
"Sequences and expression of six new members of the tetraspanin/TM4SF
family.";
Biochim. Biophys. Acta 1399:101-104(1998).
[2]
NUCLEOTIDE SEQUENCE [MRNA].
Rubinstein E., Serru V., Boucheix C.;
"New tetraspans identified in the EST database.";
Submitted (MAY-1998) to the EMBL/GenBank/DDBJ databases.
[3]
NUCLEOTIDE SEQUENCE [MRNA].
Puls K.L., Ni J., Liu D., Morahan G., Wright M.D.;
"The molecular characterization of four tetraspanins.";
Submitted (MAR-1999) to the EMBL/GenBank/DDBJ databases.
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=Testis;
PubMed=14702039; DOI=10.1038/ng1285;
Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R.,
Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H.,
Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.,
Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K.,
Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A.,
Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M.,
Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y.,
Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M.,
Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K.,
Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S.,
Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J.,
Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y.,
Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N.,
Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S.,
Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S.,
Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O.,
Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H.,
Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B.,
Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y.,
Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T.,
Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y.,
Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S.,
Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T.,
Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M.,
Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T.,
Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K.,
Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R.,
Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.;
"Complete sequencing and characterization of 21,243 full-length human
cDNAs.";
Nat. Genet. 36:40-45(2004).
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
PubMed=16710414; DOI=10.1038/nature04727;
Gregory S.G., Barlow K.F., McLay K.E., Kaul R., Swarbreck D.,
Dunham A., Scott C.E., Howe K.L., Woodfine K., Spencer C.C.A.,
Jones M.C., Gillson C., Searle S., Zhou Y., Kokocinski F.,
McDonald L., Evans R., Phillips K., Atkinson A., Cooper R., Jones C.,
Hall R.E., Andrews T.D., Lloyd C., Ainscough R., Almeida J.P.,
Ambrose K.D., Anderson F., Andrew R.W., Ashwell R.I.S., Aubin K.,
Babbage A.K., Bagguley C.L., Bailey J., Beasley H., Bethel G.,
Bird C.P., Bray-Allen S., Brown J.Y., Brown A.J., Buckley D.,
Burton J., Bye J., Carder C., Chapman J.C., Clark S.Y., Clarke G.,
Clee C., Cobley V., Collier R.E., Corby N., Coville G.J., Davies J.,
Deadman R., Dunn M., Earthrowl M., Ellington A.G., Errington H.,
Frankish A., Frankland J., French L., Garner P., Garnett J., Gay L.,
Ghori M.R.J., Gibson R., Gilby L.M., Gillett W., Glithero R.J.,
Grafham D.V., Griffiths C., Griffiths-Jones S., Grocock R.,
Hammond S., Harrison E.S.I., Hart E., Haugen E., Heath P.D.,
Holmes S., Holt K., Howden P.J., Hunt A.R., Hunt S.E., Hunter G.,
Isherwood J., James R., Johnson C., Johnson D., Joy A., Kay M.,
Kershaw J.K., Kibukawa M., Kimberley A.M., King A., Knights A.J.,
Lad H., Laird G., Lawlor S., Leongamornlert D.A., Lloyd D.M.,
Loveland J., Lovell J., Lush M.J., Lyne R., Martin S.,
Mashreghi-Mohammadi M., Matthews L., Matthews N.S.W., McLaren S.,
Milne S., Mistry S., Moore M.J.F., Nickerson T., O'Dell C.N.,
Oliver K., Palmeiri A., Palmer S.A., Parker A., Patel D., Pearce A.V.,
Peck A.I., Pelan S., Phelps K., Phillimore B.J., Plumb R., Rajan J.,
Raymond C., Rouse G., Saenphimmachak C., Sehra H.K., Sheridan E.,
Shownkeen R., Sims S., Skuce C.D., Smith M., Steward C.,
Subramanian S., Sycamore N., Tracey A., Tromans A., Van Helmond Z.,
Wall M., Wallis J.M., White S., Whitehead S.L., Wilkinson J.E.,
Willey D.L., Williams H., Wilming L., Wray P.W., Wu Z., Coulson A.,
Vaudin M., Sulston J.E., Durbin R.M., Hubbard T., Wooster R.,
Dunham I., Carter N.P., McVean G., Ross M.T., Harrow J., Olson M.V.,
Beck S., Rogers J., Bentley D.R.;
"The DNA sequence and biological annotation of human chromosome 1.";
Nature 441:315-321(2006).
[6]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L.,
Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R.,
Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V.,
Hannenhalli S., Turner R., Yooseph S., Lu F., Nusskern D.R.,
Shue B.C., Zheng X.H., Zhong F., Delcher A.L., Huson D.H.,
Kravitz S.A., Mouchard L., Reinert K., Remington K.A., Clark A.G.,
Waterman M.S., Eichler E.E., Adams M.D., Hunkapiller M.W., Myers E.W.,
Venter J.C.;
Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases.
[7]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=Colon;
PubMed=15489334; DOI=10.1101/gr.2596504;
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA
project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[8]
SUBCELLULAR LOCATION, GLYCOSYLATION AT ASN-141; ASN-154; ASN-178 AND
ASN-184, AND MUTAGENESIS OF ASN-141; ASN-154; ASN-178 AND ASN-184.
PubMed=19508227; DOI=10.2174/092986609789071234;
Scholz C.-J., Sauer G., Deissler H.;
"Glycosylation of tetraspanin Tspan-1 at four distinct sites promotes
its transition through the endoplasmic reticulum.";
Protein Pept. Lett. 16:1244-1248(2009).
-!- SUBCELLULAR LOCATION: Lysosome membrane
{ECO:0000269|PubMed:19508227}; Multi-pass membrane protein
{ECO:0000269|PubMed:19508227}.
-!- SIMILARITY: Belongs to the tetraspanin (TM4SF) family.
{ECO:0000305}.
-!- WEB RESOURCE: Name=Atlas of Genetics and Cytogenetics in Oncology
and Haematology;
URL="http://atlasgeneticsoncology.org/Genes/TSPAN1ID44178ch1p34.html";
-----------------------------------------------------------------------
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EMBL; AF054838; AAC69714.1; -; mRNA.
EMBL; AF065388; AAC17119.1; -; mRNA.
EMBL; AF133425; AAF08364.1; -; mRNA.
EMBL; AK313774; BAG36512.1; -; mRNA.
EMBL; AL672043; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; CH471059; EAX06938.1; -; Genomic_DNA.
EMBL; CH471059; EAX06939.1; -; Genomic_DNA.
EMBL; CH471059; EAX06940.1; -; Genomic_DNA.
EMBL; BC007290; AAH07290.1; -; mRNA.
EMBL; BC013404; AAH13404.1; -; mRNA.
CCDS; CCDS530.1; -.
PIR; A59262; A59262.
RefSeq; NP_005718.2; NM_005727.3.
UniGene; Hs.38972; -.
ProteinModelPortal; O60635; -.
BioGrid; 115410; 17.
IntAct; O60635; 1.
STRING; 9606.ENSP00000361072; -.
iPTMnet; O60635; -.
PhosphoSitePlus; O60635; -.
BioMuta; TSPAN1; -.
MaxQB; O60635; -.
PaxDb; O60635; -.
PeptideAtlas; O60635; -.
PRIDE; O60635; -.
DNASU; 10103; -.
Ensembl; ENST00000372003; ENSP00000361072; ENSG00000117472.
GeneID; 10103; -.
KEGG; hsa:10103; -.
UCSC; uc001cpd.4; human.
CTD; 10103; -.
DisGeNET; 10103; -.
EuPathDB; HostDB:ENSG00000117472.9; -.
GeneCards; TSPAN1; -.
HGNC; HGNC:20657; TSPAN1.
HPA; HPA011909; -.
MIM; 613170; gene.
neXtProt; NX_O60635; -.
OpenTargets; ENSG00000117472; -.
PharmGKB; PA134938100; -.
eggNOG; KOG3882; Eukaryota.
eggNOG; ENOG4111IRY; LUCA.
GeneTree; ENSGT00880000137858; -.
HOGENOM; HOG000230651; -.
HOVERGEN; HBG107159; -.
InParanoid; O60635; -.
KO; K17348; -.
OMA; CGFTNYT; -.
OrthoDB; EOG091G0PTV; -.
PhylomeDB; O60635; -.
TreeFam; TF352892; -.
GenomeRNAi; 10103; -.
PRO; PR:O60635; -.
Proteomes; UP000005640; Chromosome 1.
Bgee; ENSG00000117472; -.
CleanEx; HS_TSPAN1; -.
Genevisible; O60635; HS.
GO; GO:0030054; C:cell junction; IDA:HPA.
GO; GO:0005737; C:cytoplasm; IDA:UniProtKB.
GO; GO:0070062; C:extracellular exosome; HDA:UniProtKB.
GO; GO:0005887; C:integral component of plasma membrane; IBA:GO_Central.
GO; GO:0043231; C:intracellular membrane-bounded organelle; IDA:HPA.
GO; GO:0005765; C:lysosomal membrane; IEA:UniProtKB-SubCell.
GO; GO:0016020; C:membrane; IDA:UniProtKB.
GO; GO:0005654; C:nucleoplasm; IDA:HPA.
GO; GO:0048471; C:perinuclear region of cytoplasm; IDA:UniProtKB.
GO; GO:0005886; C:plasma membrane; IDA:UniProtKB.
GO; GO:0031982; C:vesicle; IDA:UniProtKB.
GO; GO:0016477; P:cell migration; IMP:UniProtKB.
GO; GO:0008283; P:cell proliferation; IDA:UniProtKB.
GO; GO:0007166; P:cell surface receptor signaling pathway; IBA:GO_Central.
GO; GO:0045807; P:positive regulation of endocytosis; IMP:UniProtKB.
GO; GO:0050821; P:protein stabilization; IDA:UniProtKB.
Gene3D; 1.10.1450.10; -; 1.
InterPro; IPR000301; Tetraspanin.
InterPro; IPR018499; Tetraspanin/Peripherin.
InterPro; IPR018503; Tetraspanin_CS.
InterPro; IPR008952; Tetraspanin_EC2_sf.
Pfam; PF00335; Tetraspannin; 1.
PIRSF; PIRSF002419; Tetraspanin; 1.
PRINTS; PR00259; TMFOUR.
SUPFAM; SSF48652; SSF48652; 1.
PROSITE; PS00421; TM4_1; 1.
1: Evidence at protein level;
Complete proteome; Glycoprotein; Lysosome; Membrane; Polymorphism;
Reference proteome; Transmembrane; Transmembrane helix.
CHAIN 1 241 Tetraspanin-1.
/FTId=PRO_0000219234.
TOPO_DOM 1 11 Cytoplasmic. {ECO:0000255}.
TRANSMEM 12 32 Helical. {ECO:0000255}.
TOPO_DOM 33 52 Extracellular. {ECO:0000255}.
TRANSMEM 53 73 Helical. {ECO:0000255}.
TOPO_DOM 74 88 Cytoplasmic. {ECO:0000255}.
TRANSMEM 89 109 Helical. {ECO:0000255}.
TOPO_DOM 110 211 Extracellular. {ECO:0000255}.
TRANSMEM 212 232 Helical. {ECO:0000255}.
TOPO_DOM 233 241 Cytoplasmic. {ECO:0000255}.
CARBOHYD 141 141 N-linked (GlcNAc...) asparagine.
{ECO:0000269|PubMed:19508227}.
CARBOHYD 154 154 N-linked (GlcNAc...) asparagine.
{ECO:0000269|PubMed:19508227}.
CARBOHYD 178 178 N-linked (GlcNAc...) asparagine.
{ECO:0000269|PubMed:19508227}.
CARBOHYD 184 184 N-linked (GlcNAc...) asparagine.
{ECO:0000269|PubMed:19508227}.
VARIANT 38 38 S -> F (in dbSNP:rs2234267).
/FTId=VAR_052327.
VARIANT 87 87 V -> M (in dbSNP:rs2234268).
/FTId=VAR_034573.
MUTAGEN 141 141 N->A: Loss of glycosylation.
{ECO:0000269|PubMed:19508227}.
MUTAGEN 154 154 N->A: Loss of glycosylation.
{ECO:0000269|PubMed:19508227}.
MUTAGEN 178 178 N->A: Loss of glycosylation.
{ECO:0000269|PubMed:19508227}.
MUTAGEN 184 184 N->A: Loss of glycosylation.
{ECO:0000269|PubMed:19508227}.
CONFLICT 189 189 K -> E (in Ref. 1; AAC69714).
{ECO:0000305}.
SEQUENCE 241 AA; 26301 MW; AF938AD7147CB884 CRC64;
MQCFSFIKTM MILFNLLIFL CGAALLAVGI WVSIDGASFL KIFGPLSSSA MQFVNVGYFL
IAAGVVVFAL GFLGCYGAKT ESKCALVTFF FILLLIFIAE VAAAVVALVY TTMAEHFLTL
LVVPAIKKDY GSQEDFTQVW NTTMKGLKCC GFTNYTDFED SPYFKENSAF PPFCCNDNVT
NTANETCTKQ KAHDQKVEGC FNQLLYDIRT NAVTVGGVAA GIGGLELAAM IVSMYLYCNL
Q


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