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Thermospermine synthase ACAULIS5 (EC 2.5.1.79)

 ACL5_ARATH              Reviewed;         339 AA.
Q9S7X6; A8MSC8; C0Z321; Q8VWK6; Q8W3K7; Q8W3K8; Q8W3K9;
05-OCT-2010, integrated into UniProtKB/Swiss-Prot.
01-MAY-2000, sequence version 1.
20-DEC-2017, entry version 116.
RecName: Full=Thermospermine synthase ACAULIS5;
EC=2.5.1.79;
Name=ACL5; Synonyms=TKV; OrderedLocusNames=At5g19530;
ORFNames=T20D1.50;
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA] (ISOFORM 1), MUTAGENESIS OF
GLU-123, FUNCTION, TISSUE SPECIFICITY, AND INDUCTION.
STRAIN=cv. Columbia;
PubMed=10944107; DOI=10.1093/emboj/19.16.4248;
Hanzawa Y., Takahashi T., Michael A.J., Burtin D., Long D.,
Pineiro M., Coupland G., Komeda Y.;
"ACAULIS5, an Arabidopsis gene required for stem elongation, encodes a
spermine synthase.";
EMBO J. 19:4248-4256(2000).
[2]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
STRAIN=cv. Ag-0, cv. Bl-1, cv. Bus-1, cv. Ci-0, cv. Cvi-0, cv. Dra-0,
cv. Edi-0, cv. Hau-0, cv. In-0, cv. Ita-0, cv. Kas-1, cv. Mr-0,
cv. Nok-4, cv. Ost-0, cv. Pog-0, cv. Rou-0, cv. Shokei, cv. Su-0,
cv. Ts-1, and cv. Wassilewskija;
PubMed=12655134; DOI=10.1266/ggs.78.11;
Yoshida K., Kamiya T., Kawabe A., Miyashita N.T.;
"DNA polymorphism at the ACAULIS5 locus of the wild plant Arabidopsis
thaliana.";
Genes Genet. Syst. 78:11-21(2003).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=11130714; DOI=10.1038/35048507;
Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K.,
Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S.,
Nakazaki N., Naruo K., Okumura S., Shinpo S., Takeuchi C., Wada T.,
Watanabe A., Yamada M., Yasuda M., Sato S., de la Bastide M.,
Huang E., Spiegel L., Gnoj L., O'Shaughnessy A., Preston R.,
Habermann K., Murray J., Johnson D., Rohlfing T., Nelson J.,
Stoneking T., Pepin K., Spieth J., Sekhon M., Armstrong J., Becker M.,
Belter E., Cordum H., Cordes M., Courtney L., Courtney W., Dante M.,
Du H., Edwards J., Fryman J., Haakensen B., Lamar E., Latreille P.,
Leonard S., Meyer R., Mulvaney E., Ozersky P., Riley A., Strowmatt C.,
Wagner-McPherson C., Wollam A., Yoakum M., Bell M., Dedhia N.,
Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D., Baker J.,
Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S.,
Langham S.-A., McCullagh B., Robben J., Grymonprez B., Zimmermann W.,
Ramsperger U., Wedler H., Balke K., Wedler E., Peters S.,
van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R.,
Weitzenegger T., Bothe G., Rose M., Hauf J., Berneiser S., Hempel S.,
Feldpausch M., Lamberth S., Villarroel R., Gielen J., Ardiles W.,
Bents O., Lemcke K., Kolesov G., Mayer K.F.X., Rudd S., Schoof H.,
Schueller C., Zaccaria P., Mewes H.-W., Bevan M., Fransz P.F.;
"Sequence and analysis of chromosome 5 of the plant Arabidopsis
thaliana.";
Nature 408:823-826(2000).
[4]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
The Arabidopsis Information Portal (Araport);
Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
STRAIN=cv. Columbia;
PubMed=14593172; DOI=10.1126/science.1088305;
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J.,
Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F.,
Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.,
Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J.,
Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y.,
Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P.,
Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F.,
Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M.,
Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J.,
Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T.,
Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y.,
Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis
genome.";
Science 302:842-846(2003).
[6]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
Feldmann K.A.;
"Full-length cDNA from Arabidopsis thaliana.";
Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
[7]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 3).
STRAIN=cv. Columbia;
PubMed=19423640; DOI=10.1093/dnares/dsp009;
Iida K., Fukami-Kobayashi K., Toyoda A., Sakaki Y., Kobayashi M.,
Seki M., Shinozaki K.;
"Analysis of multiple occurrences of alternative splicing events in
Arabidopsis thaliana using novel sequenced full-length cDNAs.";
DNA Res. 16:155-164(2009).
[8]
TISSUE SPECIFICITY, DEVELOPMENTAL STAGE, AND DISRUPTION PHENOTYPE.
PubMed=15894745; DOI=10.1104/pp.104.055756;
Clay N.K., Nelson T.;
"Arabidopsis thickvein mutation affects vein thickness and organ
vascularization, and resides in a provascular cell-specific spermine
synthase involved in vein definition and in polar auxin transport.";
Plant Physiol. 138:767-777(2005).
[9]
FUNCTION, AND CATALYTIC ACTIVITY.
PubMed=17560575; DOI=10.1016/j.febslet.2007.05.074;
Knott J.M., Romer P., Sumper M.;
"Putative spermine synthases from Thalassiosira pseudonana and
Arabidopsis thaliana synthesize thermospermine rather than spermine.";
FEBS Lett. 581:3081-3086(2007).
[10]
FUNCTION, AND DISRUPTION PHENOTYPE.
PubMed=18599510; DOI=10.1242/dev.019349;
Muniz L., Minguet E.G., Singh S.K., Pesquet E., Vera-Sirera F.,
Moreau-Courtois C.L., Carbonell J., Blazquez M.A., Tuominen H.;
"ACAULIS5 controls Arabidopsis xylem specification through the
prevention of premature cell death.";
Development 135:2573-2582(2008).
[11]
FUNCTION, AND INDUCTION BY THERMOSPERMINE.
PubMed=18669523; DOI=10.1093/pcp/pcn109;
Kakehi J., Kuwashiro Y., Niitsu M., Takahashi T.;
"Thermospermine is required for stem elongation in Arabidopsis
thaliana.";
Plant Cell Physiol. 49:1342-1349(2008).
[12]
INDUCTION BY SALT.
PubMed=20137962; DOI=10.1016/j.plaphy.2010.01.013;
Naka Y., Watanabe K., Sagor G.H., Niitsu M., Pillai M.A., Kusano T.,
Takahashi Y.;
"Quantitative analysis of plant polyamines including thermospermine
during growth and salinity stress.";
Plant Physiol. Biochem. 48:527-533(2010).
-!- FUNCTION: Required for correct xylem specification through
regulation of the lifetime of the xylem elements. Prevents
premature death of the xylem vessel elements.
{ECO:0000269|PubMed:10944107, ECO:0000269|PubMed:17560575,
ECO:0000269|PubMed:18599510, ECO:0000269|PubMed:18669523}.
-!- CATALYTIC ACTIVITY: S-adenosyl 3-(methylthio)propylamine +
spermidine = S-methyl-5'-thioadenosine + thermospermine + H(+).
{ECO:0000269|PubMed:17560575}.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=3;
Name=1;
IsoId=Q9S7X6-1; Sequence=Displayed;
Name=2;
IsoId=Q9S7X6-2; Sequence=VSP_039690;
Note=Derived from EST data. No experimental confirmation
available.;
Name=3;
IsoId=Q9S7X6-3; Sequence=VSP_039689;
Note=No experimental confirmation available.;
-!- TISSUE SPECIFICITY: Highly expressed in stem internodes and roots.
Lower levels in young seedlings before flowering and rosette
leaves. Expressed in the vascular tissues. Restricted to
procambial and/or provascular cells during primary root
development and early leaves development.
{ECO:0000269|PubMed:10944107, ECO:0000269|PubMed:15894745}.
-!- DEVELOPMENTAL STAGE: Expressed throughout early globular-staged
embryos and during embryogenesis. {ECO:0000269|PubMed:15894745}.
-!- INDUCTION: Up-regulated by auxin (IAA), but not by abscisic acid
(ABA), brassinolid (BR), gibberelic acid (GA3)or benzyl
aminopurine (BA). Down-regulated by salt stress and
thermospermine. {ECO:0000269|PubMed:10944107,
ECO:0000269|PubMed:18669523, ECO:0000269|PubMed:20137962}.
-!- DISRUPTION PHENOTYPE: Severe reduction in the length of stem
internodes. Increased thickness of veins in leaves and
inflorescence stems. Altered morphology of xylem vessel elements.
{ECO:0000269|PubMed:15894745, ECO:0000269|PubMed:18599510}.
-!- SIMILARITY: Belongs to the spermidine/spermine synthase family.
{ECO:0000305}.
-----------------------------------------------------------------------
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EMBL; AF184094; AAF01312.1; -; mRNA.
EMBL; AF184093; AAF01311.1; -; Genomic_DNA.
EMBL; AB076723; BAB83633.1; -; Genomic_DNA.
EMBL; AB076724; BAB83634.1; -; Genomic_DNA.
EMBL; AB076725; BAB83635.1; -; Genomic_DNA.
EMBL; AB076726; BAB83636.1; -; Genomic_DNA.
EMBL; AB076727; BAB83637.1; -; Genomic_DNA.
EMBL; AB076728; BAB83638.1; -; Genomic_DNA.
EMBL; AB076729; BAB83639.1; -; Genomic_DNA.
EMBL; AB076730; BAB83640.1; -; Genomic_DNA.
EMBL; AB076731; BAB83641.1; -; Genomic_DNA.
EMBL; AB076732; BAB83642.1; -; Genomic_DNA.
EMBL; AB076733; BAB83643.1; -; Genomic_DNA.
EMBL; AB076734; BAB83644.1; -; Genomic_DNA.
EMBL; AB076735; BAB83645.1; -; Genomic_DNA.
EMBL; AB076736; BAB83646.1; -; Genomic_DNA.
EMBL; AB076737; BAB83647.1; -; Genomic_DNA.
EMBL; AB076739; BAB83649.1; -; Genomic_DNA.
EMBL; AB076740; BAB83650.1; -; Genomic_DNA.
EMBL; AB076741; BAB83651.1; -; Genomic_DNA.
EMBL; AB076742; BAB83652.1; -; Genomic_DNA.
EMBL; AB076743; BAB83653.1; -; Genomic_DNA.
EMBL; AB076738; BAB83648.1; -; Genomic_DNA.
EMBL; AF296830; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; CP002688; AED92721.1; -; Genomic_DNA.
EMBL; CP002688; AED92722.1; -; Genomic_DNA.
EMBL; AY127003; AAM83230.1; -; mRNA.
EMBL; BT002254; AAN72265.1; -; mRNA.
EMBL; AY087927; AAM65477.1; -; mRNA.
EMBL; AK318985; BAH57100.1; -; mRNA.
RefSeq; NP_001078605.1; NM_001085136.1. [Q9S7X6-2]
RefSeq; NP_568376.1; NM_121958.4. [Q9S7X6-1]
UniGene; At.11696; -.
ProteinModelPortal; Q9S7X6; -.
SMR; Q9S7X6; -.
STRING; 3702.AT5G19530.1; -.
iPTMnet; Q9S7X6; -.
PaxDb; Q9S7X6; -.
EnsemblPlants; AT5G19530.1; AT5G19530.1; AT5G19530. [Q9S7X6-1]
EnsemblPlants; AT5G19530.2; AT5G19530.2; AT5G19530. [Q9S7X6-2]
GeneID; 832073; -.
Gramene; AT5G19530.1; AT5G19530.1; AT5G19530. [Q9S7X6-1]
Gramene; AT5G19530.2; AT5G19530.2; AT5G19530. [Q9S7X6-2]
KEGG; ath:AT5G19530; -.
Araport; AT5G19530; -.
TAIR; locus:2180816; AT5G19530.
eggNOG; KOG1562; Eukaryota.
eggNOG; COG0421; LUCA.
InParanoid; Q9S7X6; -.
KO; K18787; -.
OMA; DPIEAGP; -.
OrthoDB; EOG09360D8I; -.
PhylomeDB; Q9S7X6; -.
BioCyc; MetaCyc:MONOMER-15365; -.
BRENDA; 2.5.1.79; 399.
PRO; PR:Q9S7X6; -.
Proteomes; UP000006548; Chromosome 5.
ExpressionAtlas; Q9S7X6; baseline and differential.
Genevisible; Q9S7X6; AT.
GO; GO:0005737; C:cytoplasm; TAS:TAIR.
GO; GO:0016768; F:spermine synthase activity; IDA:TAIR.
GO; GO:0010487; F:thermospermine synthase activity; IDA:TAIR.
GO; GO:0009926; P:auxin polar transport; IMP:TAIR.
GO; GO:0010087; P:phloem or xylem histogenesis; IMP:TAIR.
GO; GO:0006596; P:polyamine biosynthetic process; IEA:UniProtKB-KW.
GO; GO:0048759; P:xylem vessel member cell differentiation; IMP:TAIR.
Gene3D; 2.30.140.10; -; 1.
HAMAP; MF_00198; Spermidine_synth; 1.
InterPro; IPR030374; PABS.
InterPro; IPR029063; SAM-dependent_MTases.
InterPro; IPR001045; Spermi_synthase.
InterPro; IPR035246; Spermidine_synt_N.
InterPro; IPR037163; Spermidine_synt_N_sf.
Pfam; PF17284; Spermine_synt_N; 1.
SUPFAM; SSF53335; SSF53335; 1.
PROSITE; PS51006; PABS_2; 1.
1: Evidence at protein level;
Alternative splicing; Complete proteome; Polyamine biosynthesis;
Reference proteome; Transferase.
CHAIN 1 339 Thermospermine synthase ACAULIS5.
/FTId=PRO_0000397674.
DOMAIN 33 270 PABS.
REGION 168 169 S-adenosylmethioninamine binding.
{ECO:0000250}.
ACT_SITE 186 186 Proton acceptor. {ECO:0000250}.
BINDING 62 62 S-adenosylmethioninamine. {ECO:0000250}.
BINDING 117 117 S-adenosylmethioninamine. {ECO:0000250}.
BINDING 137 137 S-adenosylmethioninamine. {ECO:0000250}.
VAR_SEQ 1 81 Missing (in isoform 3).
{ECO:0000303|PubMed:19423640}.
/FTId=VSP_039689.
VAR_SEQ 1 7 Missing (in isoform 2). {ECO:0000305}.
/FTId=VSP_039690.
VARIANT 17 17 H -> L (in strain: cv. Bus-1, cv. Ci-0,
cv. Cvi-0, cv. Edi-0, cv. Kas-1 and cv.
Ost-0).
VARIANT 63 63 D -> N (in strain: cv. Pog-0).
VARIANT 240 240 N -> S (in strain: cv. Bl-1).
VARIANT 259 259 F -> L (in strain: cv. Edi-0).
MUTAGEN 123 123 E->K: In acl5-1; loss of function.
{ECO:0000269|PubMed:10944107}.
SEQUENCE 339 AA; 38547 MW; 2DB97B1E9DB447F9 CRC64;
MGEAVEVMFG NGFPEIHKAT SPTQTLHSNQ QDCHWYEETI DDDLKWSFAL NSVLHQGTSE
YQDIALLDTK RFGKVLVIDG KMQSAERDEF IYHECLIHPA LLFHPNPKTV FIMGGGEGSA
AREILKHTTI EKVVMCDIDQ EVVDFCRRFL TVNSDAFCNK KLELVIKDAK AELEKREEKF
DIIVGDLADP VEGGPCYQLY TKSFYQNILK PKLSPNGIFV TQAGPAGIFT HKEVFTSIYN
TMKQVFKYVK AYTAHVPSFA DTWGWVMASD HEFDVEVDEM DRRIEERVNG ELMYLNAPSF
VSAATLNKTI SLALEKETEV YSEENARFIH GHGVAYRHI


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547, Yurok Circle
San Jose, CA 95123
CA 95123
Tel (408) 780-0908,
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Genprice Inc, Invoices and accounting
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San Jose, CA 95123




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NL850396268B01 KVK nummer 52327027
Kuiper 1
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