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Toll-like receptor 3 (Fragment)

 R0M8K4_ANAPL            Unreviewed;       899 AA.
R0M8K4;
26-JUN-2013, integrated into UniProtKB/TrEMBL.
26-JUN-2013, sequence version 1.
23-MAY-2018, entry version 42.
SubName: Full=Toll-like receptor 3 {ECO:0000313|EMBL:EOB09103.1, ECO:0000313|Ensembl:ENSAPLP00000008663};
Flags: Fragment;
Name=TLR3 {ECO:0000313|Ensembl:ENSAPLP00000008663};
ORFNames=Anapl_09935 {ECO:0000313|EMBL:EOB09103.1};
Anas platyrhynchos (Mallard) (Anas boschas).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae;
Anatinae; Anas.
NCBI_TaxID=8839 {ECO:0000313|EMBL:EOB09103.1};
[1] {ECO:0000313|EMBL:EOB09103.1, ECO:0000313|Ensembl:ENSAPLP00000008663}
NUCLEOTIDE SEQUENCE.
Li N.;
"The genome sequence and transcriptome of duck provide insight into
the interaction host.";
Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases.
[2] {ECO:0000313|Ensembl:ENSAPLP00000008663}
NUCLEOTIDE SEQUENCE.
PubMed=23749191; DOI=10.1038/ng.2657;
Huang Y., Li Y., Burt D.W., Chen H., Zhang Y., Qian W., Kim H.,
Gan S., Zhao Y., Li J., Yi K., Feng H., Zhu P., Li B., Liu Q.,
Fairley S., Magor K.E., Du Z., Hu X., Goodman L., Tafer H., Vignal A.,
Lee T., Kim K.W., Sheng Z., An Y., Searle S., Herrero J.,
Groenen M.A., Crooijmans R.P., Faraut T., Cai Q., Webster R.G.,
Aldridge J.R., Warren W.C., Bartschat S., Kehr S., Marz M.,
Stadler P.F., Smith J., Kraus R.H., Zhao Y., Ren L., Fei J.,
Morisson M., Kaiser P., Griffin D.K., Rao M., Pitel F., Wang J.,
Li N.;
"The duck genome and transcriptome provide insight into an avian
influenza virus reservoir species.";
Nat. Genet. 45:776-783(2013).
[3] {ECO:0000313|Ensembl:ENSAPLP00000008663}
IDENTIFICATION.
Ensembl;
Submitted (SEP-2013) to UniProtKB.
-!- SIMILARITY: Belongs to the Toll-like receptor family.
{ECO:0000256|SAAS:SAAS00598595}.
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EMBL; ADON01000672; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; KB742391; EOB09103.1; -; Genomic_DNA.
SMR; R0M8K4; -.
Ensembl; ENSAPLT00000009346; ENSAPLP00000008663; ENSAPLG00000008976.
GeneTree; ENSGT00760000119006; -.
OMA; HLLKDPL; -.
OrthoDB; EOG091G02Q2; -.
Proteomes; UP000016666; Unassembled WGS sequence.
GO; GO:0005737; C:cytoplasm; IEA:Ensembl.
GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
GO; GO:0003725; F:double-stranded RNA binding; IEA:Ensembl.
GO; GO:0042802; F:identical protein binding; IEA:Ensembl.
GO; GO:0004888; F:transmembrane signaling receptor activity; IEA:InterPro.
GO; GO:0071260; P:cellular response to mechanical stimulus; IEA:Ensembl.
GO; GO:0051607; P:defense response to virus; IEA:Ensembl.
GO; GO:0097191; P:extrinsic apoptotic signaling pathway; IEA:Ensembl.
GO; GO:0007252; P:I-kappaB phosphorylation; IEA:Ensembl.
GO; GO:0045087; P:innate immune response; IEA:UniProtKB-KW.
GO; GO:0002756; P:MyD88-independent toll-like receptor signaling pathway; IEA:InterPro.
GO; GO:0097527; P:necroptotic signaling pathway; IEA:Ensembl.
GO; GO:0045766; P:positive regulation of angiogenesis; IEA:Ensembl.
GO; GO:0045080; P:positive regulation of chemokine biosynthetic process; IEA:Ensembl.
GO; GO:0043123; P:positive regulation of I-kappaB kinase/NF-kappaB signaling; IEA:Ensembl.
GO; GO:0050729; P:positive regulation of inflammatory response; IEA:InterPro.
GO; GO:0045356; P:positive regulation of interferon-alpha biosynthetic process; IEA:Ensembl.
GO; GO:0045359; P:positive regulation of interferon-beta biosynthetic process; IEA:Ensembl.
GO; GO:0045078; P:positive regulation of interferon-gamma biosynthetic process; IEA:Ensembl.
GO; GO:0032735; P:positive regulation of interleukin-12 production; IEA:Ensembl.
GO; GO:0032755; P:positive regulation of interleukin-6 production; IEA:Ensembl.
GO; GO:0032757; P:positive regulation of interleukin-8 production; IEA:Ensembl.
GO; GO:0046330; P:positive regulation of JNK cascade; IEA:Ensembl.
GO; GO:0051092; P:positive regulation of NF-kappaB transcription factor activity; IEA:Ensembl.
GO; GO:1901224; P:positive regulation of NIK/NF-kappaB signaling; IEA:Ensembl.
GO; GO:0034123; P:positive regulation of toll-like receptor signaling pathway; IEA:Ensembl.
GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IEA:Ensembl.
GO; GO:0032760; P:positive regulation of tumor necrosis factor production; IEA:Ensembl.
GO; GO:0034346; P:positive regulation of type III interferon production; IEA:Ensembl.
GO; GO:0002730; P:regulation of dendritic cell cytokine production; IEA:Ensembl.
GO; GO:0043330; P:response to exogenous dsRNA; IEA:Ensembl.
GO; GO:0034138; P:toll-like receptor 3 signaling pathway; IEA:InterPro.
Gene3D; 3.40.50.10140; -; 1.
Gene3D; 3.80.10.10; -; 1.
InterPro; IPR000483; Cys-rich_flank_reg_C.
InterPro; IPR001611; Leu-rich_rpt.
InterPro; IPR003591; Leu-rich_rpt_typical-subtyp.
InterPro; IPR032675; LRR_dom_sf.
InterPro; IPR000157; TIR_dom.
InterPro; IPR027173; TLR3.
InterPro; IPR035897; Toll_tir_struct_dom_sf.
PANTHER; PTHR44599; PTHR44599; 1.
Pfam; PF13855; LRR_8; 5.
Pfam; PF01582; TIR; 1.
SMART; SM00369; LRR_TYP; 15.
SMART; SM00082; LRRCT; 1.
SMART; SM00255; TIR; 1.
SUPFAM; SSF52200; SSF52200; 1.
PROSITE; PS51450; LRR; 19.
PROSITE; PS50104; TIR; 1.
3: Inferred from homology;
Coiled coil {ECO:0000256|SAM:Coils};
Complete proteome {ECO:0000313|Proteomes:UP000016666};
Immunity {ECO:0000256|SAAS:SAAS00472892};
Innate immunity {ECO:0000256|SAAS:SAAS00472892};
Leucine-rich repeat {ECO:0000256|SAAS:SAAS00488662};
Membrane {ECO:0000256|SAAS:SAAS00598878, ECO:0000256|SAM:Phobius};
Receptor {ECO:0000256|SAAS:SAAS00473103, ECO:0000313|EMBL:EOB09103.1};
Reference proteome {ECO:0000313|Proteomes:UP000016666};
Repeat {ECO:0000256|SAAS:SAAS00597472};
Signal {ECO:0000256|SAM:SignalP};
Transmembrane {ECO:0000256|SAAS:SAAS00598878,
ECO:0000256|SAM:Phobius};
Transmembrane helix {ECO:0000256|SAAS:SAAS00598878,
ECO:0000256|SAM:Phobius}.
SIGNAL 1 30 {ECO:0000256|SAM:SignalP}.
CHAIN 31 899 {ECO:0000256|SAM:SignalP}.
/FTId=PRO_5014108682.
TRANSMEM 698 719 Helical. {ECO:0000256|SAM:Phobius}.
DOMAIN 748 853 TIR. {ECO:0000259|PROSITE:PS50104}.
COILED 160 180 {ECO:0000256|SAM:Coils}.
NON_TER 1 1 {ECO:0000313|EMBL:EOB09103.1}.
NON_TER 899 899 {ECO:0000313|EMBL:EOB09103.1}.
SEQUENCE 899 AA; 102678 MW; BFB29F4DC873EE8F CRC64;
ADKAMGSDIL CWKSLSLRLV SVCLLCASVG KQCQIRNTMA DCSHLKLTQI PSDLPNNITG
LDISHNQLKK LCHANLTRYS KLVYLNAGYN IISKLQPELC KNLPLLQILV LEHNQLHELP
DGAFASCTNL TELNLGYNII DVKNDPFKTL ENLNILDLTH NHLKSANLGL QQQLKNLREL
VLCGNQITEL KKEDLSFLSN TSLNSLDLSS NPLKEFHTGC LRAIGNLFGL ILNNVELGEN
RTQKLCTELS NTAIQNLSLS HVKLSYINKT TFQGLQGTNL TVLNLSKNYL SVIEDNSFQW
LSNLEYLNLK DNSIHVSSHS FYGLSSVKHL NLINSLTGKI EDFSFHWLYH LEYLLMDNNN
FPRITTNMFT GLNNLKYLSL SNCNINLQRI TNTTFLSLAN SSLQVLNLTK TRIYTIESGA
FSCLGHLKIL DLGLNEISQE LTGHEFKGLN NIQYIYLSYN KNLTLRSESF SFVPSLRMLM
LRKVGCSNLA ISPSPFHPLQ NLTVLDISNN NIANIKEDLF DGLHKLDILN LQHNNLARLW
KHANPGGPVL FLKDLPNLHV LNLKSNGFDE IPVQVFKGLF QLKYLDLGSN NLNLLPATLF
DDQTSLNSLN LQKNLITSVE EEVFGSAFKN LRKLEMDSNP FDCTCESIAW FASWLNATQA
YIPGLQSQYI CNTPPKYHGT LVLHFDTSAC KDSAPFKLLF MITTTAVMLL IFIVLLIHFE
GWRIAFYWNI SVNRILGFKE LDRLQEEYDY DAYIIHARHD RNWVLKNFIS LEKNKQFEVR
FCLEERDFEA GVSEFEAIIN SIRRSRKIIF VVTEHLLKDP WCKKFKVYHA VQQAIEQSRD
SIILVFLHDI QDYKLNHALC LRRGMFRSRC ILKWPAQKER VNAFHQQLVM ALKSNSKAR


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