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Transcription factor AS1 (Myb-related protein 91) (AtMYB91) (Protein ASYMMETRIC LEAVES 1) (Protein PHANTASTICA) (AtPHAN)

 AS1_ARATH               Reviewed;         367 AA.
O80931; Q53YQ1;
28-MAR-2003, integrated into UniProtKB/Swiss-Prot.
01-NOV-1998, sequence version 1.
25-OCT-2017, entry version 136.
RecName: Full=Transcription factor AS1 {ECO:0000303|PubMed:11140682};
AltName: Full=Myb-related protein 91 {ECO:0000303|PubMed:9839469};
Short=AtMYB91 {ECO:0000303|PubMed:9839469};
AltName: Full=Protein ASYMMETRIC LEAVES 1 {ECO:0000303|PubMed:11140682};
AltName: Full=Protein PHANTASTICA {ECO:0000303|PubMed:10102816};
Short=AtPHAN {ECO:0000303|PubMed:10102816};
Name=AS1 {ECO:0000303|PubMed:11140682};
Synonyms=MYB91 {ECO:0000303|PubMed:9839469},
PHAN {ECO:0000303|PubMed:10102816};
OrderedLocusNames=At2g37630 {ECO:0000312|Araport:AT2G37630};
ORFNames=F13M22.13 {ECO:0000312|EMBL:AAC23633.1};
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [MRNA], AND NOMENCLATURE.
STRAIN=cv. Columbia;
PubMed=9839469; DOI=10.1046/j.1365-313x.1998.00278.x;
Kranz H.D., Denekamp M., Greco R., Jin H.-L., Leyva A., Meissner R.C.,
Petroni K., Urzainqui A., Bevan M., Martin C., Smeekens S.,
Tonelli C., Paz-Ares J., Weisshaar B.;
"Towards functional characterisation of the members of the R2R3-MYB
gene family from Arabidopsis thaliana.";
Plant J. 16:263-276(1998).
[2]
NUCLEOTIDE SEQUENCE [MRNA].
STRAIN=cv. Columbia;
PubMed=11597504; DOI=10.1016/S1369-5266(00)00199-0;
Stracke R., Werber M., Weisshaar B.;
"The R2R3-MYB gene family in Arabidopsis thaliana.";
Curr. Opin. Plant Biol. 4:447-456(2001).
[3]
NUCLEOTIDE SEQUENCE [MRNA], CHARACTERIZATION, AND FUNCTION.
STRAIN=cv. Landsberg erecta;
PubMed=11140682; DOI=10.1038/35050091;
Byrne M.E., Barley R., Curtis M., Arroyo J.M., Dunham M., Hudson A.,
Martienssen R.A.;
"ASYMMETRIC LEAVES1 mediates leaf patterning and stem cell function in
Arabidopsis.";
Nature 408:967-971(2000).
[4]
NUCLEOTIDE SEQUENCE [GENOMIC DNA], CHARACTERIZATION, AND FUNCTION.
STRAIN=cv. Landsberg erecta;
PubMed=11882937; DOI=10.1007/s004250100673;
Sun Y., Zhou Q., Zhang W., Fu Y., Huang H.;
"ASYMMETRIC LEAVES1, an Arabidopsis gene that is involved in the
control of cell differentiation in leaves.";
Planta 214:694-702(2002).
[5]
NUCLEOTIDE SEQUENCE [MRNA].
Qu L.-J., Gu H.;
"The MYB transcription factor family in Arabidopsis: a genome-wide
cloning and expression pattern analysis.";
Submitted (JAN-2004) to the EMBL/GenBank/DDBJ databases.
[6]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=10617197; DOI=10.1038/45471;
Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L.,
Moffat K.S., Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L.,
Tallon L.J., Gill J.E., Adams M.D., Carrera A.J., Creasy T.H.,
Goodman H.M., Somerville C.R., Copenhaver G.P., Preuss D.,
Nierman W.C., White O., Eisen J.A., Salzberg S.L., Fraser C.M.,
Venter J.C.;
"Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana.";
Nature 402:761-768(1999).
[7]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
The Arabidopsis Information Portal (Araport);
Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
[8]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
Quinitio C., Chen H., Kim C.J., Shinn P., Ecker J.R.;
"Arabidopsis ORF clone.";
Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
[9]
IDENTIFICATION.
PubMed=10102816; DOI=10.1126/science.284.5411.151;
Timmermans M.C.P., Hudson A., Becraft P.W., Nelson T.;
"ROUGH SHEATH2: a Myb protein that represses knox homeobox genes in
maize lateral organ primordia.";
Science 284:151-153(1999).
[10]
FUNCTION.
PubMed=11076771;
Ori N., Eshed Y., Chuck G., Bowman J.L., Hake S.;
"Mechanisms that control knox gene expression in the Arabidopsis
shoot.";
Development 127:5523-5532(2000).
[11]
CHARACTERIZATION.
PubMed=11934861;
Byrne M.E., Simorowski J., Martienssen R.A.;
"ASYMMETRIC LEAVES1 reveals knox gene redundancy in Arabidopsis.";
Development 129:1957-1965(2002).
[12]
FUNCTION, AND SUBUNIT.
PubMed=12750468; DOI=10.1073/pnas.1132113100;
Theodoris G., Inada N., Freeling M.;
"Conservation and molecular dissection of ROUGH SHEATH2 and ASYMMETRIC
LEAVES1 function in leaf development.";
Proc. Natl. Acad. Sci. U.S.A. 100:6837-6842(2003).
[13]
INTERACTION WITH LBD6/AS2.
PubMed=12874130; DOI=10.1242/dev.00622;
Xu L., Xu Y., Dong A., Sun Y., Pi L., Xu Y., Huang H.;
"Novel as1 and as2 defects in leaf adaxial-abaxial polarity reveal the
requirement for ASYMMETRIC LEAVES1 and 2 and ERECTA functions in
specifying leaf adaxial identity.";
Development 130:4097-4107(2003).
[14]
INTERACTION WITH HIRA; RIK AND LBD6/AS2.
PubMed=16243907; DOI=10.1105/tpc.105.035477;
Phelps-Durr T.L., Thomas J., Vahab P., Timmermans M.C.P.;
"Maize rough sheath2 and its Arabidopsis orthologue ASYMMETRIC LEAVES1
interact with HIRA, a predicted histone chaperone, to maintain knox
gene silencing and determinacy during organogenesis.";
Plant Cell 17:2886-2898(2005).
[15]
INDUCTION.
PubMed=16166385; DOI=10.1101/gad.352005;
Chua Y.L., Channeliere S., Mott E., Gray J.C.;
"The bromodomain protein GTE6 controls leaf development in Arabidopsis
by histone acetylation at ASYMMETRIC LEAVES1.";
Genes Dev. 19:2245-2254(2005).
[16]
FUNCTION.
PubMed=16006579; DOI=10.1105/tpc.105.033449;
Li H., Xu L., Wang H., Yuan Z., Cao X., Yang Z., Zhang D., Xu Y.,
Huang H.;
"The Putative RNA-dependent RNA polymerase RDR6 acts synergistically
with ASYMMETRIC LEAVES1 and 2 to repress BREVIPEDICELLUS and
MicroRNA165/166 in Arabidopsis leaf development.";
Plant Cell 17:2157-2171(2005).
[17]
FUNCTION.
PubMed=16699177; DOI=10.1093/pcp/pcj057;
Xu L., Yang L., Pi L., Liu Q., Ling Q., Wang H., Poethig R.S.,
Huang H.;
"Genetic interaction between the AS1-AS2 and RDR6-SGS3-AGO7 pathways
for leaf morphogenesis.";
Plant Cell Physiol. 47:853-863(2006).
[18]
GENE FAMILY.
PubMed=16463103; DOI=10.1007/s11103-005-2910-y;
Chen Y., Yang X., He K., Liu M., Li J., Gao Z., Lin Z., Zhang Y.,
Wang X., Qiu X., Shen Y., Zhang L., Deng X., Luo J., Deng X.-W.,
Chen Z., Gu H., Qu L.-J.;
"The MYB transcription factor superfamily of Arabidopsis: expression
analysis and phylogenetic comparison with the rice MYB family.";
Plant Mol. Biol. 60:107-124(2006).
[19]
FUNCTION.
PubMed=17395603; DOI=10.1093/pcp/pcm040;
Fu Y., Xu L., Xu B., Yang L., Ling Q., Wang H., Huang H.;
"Genetic interactions between leaf polarity-controlling genes and
ASYMMETRIC LEAVES1 and 2 in Arabidopsis leaf patterning.";
Plant Cell Physiol. 48:724-735(2007).
[20]
FUNCTION, AND TISSUE SPECIFICITY.
PubMed=17559509; DOI=10.1111/j.1365-313X.2007.03132.x;
Iwakawa H., Iwasaki M., Kojima S., Ueno Y., Soma T., Tanaka H.,
Semiarti E., Machida Y., Machida C.;
"Expression of the ASYMMETRIC LEAVES2 gene in the adaxial domain of
Arabidopsis leaves represses cell proliferation in this domain and is
critical for the development of properly expanded leaves.";
Plant J. 51:173-184(2007).
[21]
FUNCTION, INTERACTION WITH HDA6 AND LBD6, AND SUBCELLULAR LOCATION.
PubMed=23271976; DOI=10.1371/journal.pgen.1003114;
Luo M., Yu C.W., Chen F.F., Zhao L., Tian G., Liu X., Cui Y.,
Yang J.Y., Wu K.;
"Histone deacetylase HDA6 is functionally associated with AS1 in
repression of KNOX genes in arabidopsis.";
PLoS Genet. 8:E1003114-E1003114(2012).
[22]
FUNCTION, INTERACTION WITH CO, TISSUE SPECIFICITY, AND INDUCTION.
PubMed=21950734; DOI=10.1111/j.1365-313X.2011.04793.x;
Song Y.H., Lee I., Lee S.Y., Imaizumi T., Hong J.C.;
"CONSTANS and ASYMMETRIC LEAVES 1 complex is involved in the induction
of FLOWERING LOCUS T in photoperiodic flowering in Arabidopsis.";
Plant J. 69:332-342(2012).
-!- FUNCTION: Transcription factor required for normal cell
differentiation. Positively regulates LATERAL ORGAN BOUNDARIES
(LOB) within the shoot apex, and the class III HD-ZIP genes REV,
PHB, and PHV. Interacts directly with ASYMMETRIC LEAVES 2
(LBD6/AS2) to repress the knox homeobox genes BP/KNAT1, KNAT2, and
KNAT6 and the abaxial determinants ARF3/ETT, KAN2 and YAB5. May
act in parallel with the RDR6-SGS3-AGO7 pathway, an endogenous RNA
silencing pathway, to regulate the leaf morphogenesis
(PubMed:11076771, PubMed:11140682, PubMed:11882937,
PubMed:12750468, PubMed:16006579, PubMed:16699177,
PubMed:17395603, PubMed:17559509, PubMed:23271976). Binds directly
to KNAT1, KNAT2, and KNATM chromatin, regulating leaf development
(PubMed:23271976). LBD6 is required for this binding
(PubMed:23271976). Positive regulator of flowering that binds to
the promoter of FT (PubMed:21950734). Regulates FT expression by
forming a functional complex with CO (PubMed:21950734).
{ECO:0000269|PubMed:11076771, ECO:0000269|PubMed:11140682,
ECO:0000269|PubMed:11882937, ECO:0000269|PubMed:12750468,
ECO:0000269|PubMed:16006579, ECO:0000269|PubMed:16699177,
ECO:0000269|PubMed:17395603, ECO:0000269|PubMed:17559509,
ECO:0000269|PubMed:23271976}.
-!- SUBUNIT: Homodimer (PubMed:12750468, PubMed:23271976). Heterodimer
with LBD6 (PubMed:23271976). Interacts with LBD6/AS2, HIRA, a
probable histone chaperone, and RIK, a predicted RNA binding
protein (PubMed:12874130, PubMed:16243907). Part of the AS1
repressor complex composed of AS1, LBD6/AS2 and HDA6
(PubMed:23271976). Interacts with CO (PubMed:21950734).
{ECO:0000269|PubMed:12750468, ECO:0000269|PubMed:12874130,
ECO:0000269|PubMed:16243907, ECO:0000269|PubMed:21950734,
ECO:0000269|PubMed:23271976}.
-!- INTERACTION:
Q8RY59:RCD1; NbExp=2; IntAct=EBI-763232, EBI-2118043;
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:23271976}.
-!- TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers,
siliques and in lateral organ promordia (PubMed:17559509). Found
in the inner domain between the adaxial and abaxial domains of
leaves (PubMed:17559509). Expressed in the phloem tissues of
leaves, cotyledons, hypocotyls, and roots (PubMed:21950734).
{ECO:0000269|PubMed:17559509, ECO:0000269|PubMed:21950734}.
-!- DEVELOPMENTAL STAGE: Preferential expression in young and immature
plant tissues. In embryos, expressed from the late globular stage
onwards. After germination, detected in leaf founder cells and on
flowering, in primordia of all floral organs.
-!- INDUCTION: Circadian-regulation with an afternoon peak in long
days and with a broad night peak in short days (PubMed:21950734).
Expression of AS1 in stem cells of the shoot apical meristem is
prevented by SHOOT MERISTEMLESS (STM). Expression is activated by
GTE6 during leaf morphogenesis (PubMed:16166385).
{ECO:0000269|PubMed:16166385, ECO:0000269|PubMed:21950734}.
-!- DOMAIN: A C-terminal domain (252-356) is required for
dimerization.
-----------------------------------------------------------------------
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Distributed under the Creative Commons Attribution-NoDerivs License
-----------------------------------------------------------------------
EMBL; AF175996; AAD53101.1; -; mRNA.
EMBL; AY519578; AAS10048.1; -; mRNA.
EMBL; AC004684; AAC23633.1; -; Genomic_DNA.
EMBL; CP002685; AEC09428.1; -; Genomic_DNA.
EMBL; BT026027; ABG48383.1; -; mRNA.
PIR; T02529; T02529.
RefSeq; NP_181299.1; NM_129319.4.
UniGene; At.11577; -.
ProteinModelPortal; O80931; -.
SMR; O80931; -.
BioGrid; 3684; 16.
IntAct; O80931; 5.
STRING; 3702.AT2G37630.1; -.
PaxDb; O80931; -.
EnsemblPlants; AT2G37630.1; AT2G37630.1; AT2G37630.
GeneID; 818340; -.
Gramene; AT2G37630.1; AT2G37630.1; AT2G37630.
KEGG; ath:AT2G37630; -.
Araport; AT2G37630; -.
TAIR; locus:2040671; AT2G37630.
eggNOG; KOG0048; Eukaryota.
eggNOG; COG5147; LUCA.
HOGENOM; HOG000244041; -.
InParanoid; O80931; -.
KO; K09422; -.
OMA; CRRREKM; -.
OrthoDB; EOG09360N0R; -.
PhylomeDB; O80931; -.
PRO; PR:O80931; -.
Proteomes; UP000006548; Chromosome 2.
ExpressionAtlas; O80931; baseline and differential.
Genevisible; O80931; AT.
GO; GO:0000793; C:condensed chromosome; IDA:TAIR.
GO; GO:0005730; C:nucleolus; IDA:TAIR.
GO; GO:0005634; C:nucleus; IDA:TAIR.
GO; GO:0003677; F:DNA binding; IPI:TAIR.
GO; GO:0042803; F:protein homodimerization activity; IPI:TAIR.
GO; GO:0000981; F:RNA polymerase II transcription factor activity, sequence-specific DNA binding; IBA:GO_Central.
GO; GO:0043565; F:sequence-specific DNA binding; IPI:TAIR.
GO; GO:0001135; F:transcription factor activity, RNA polymerase II transcription factor recruiting; IBA:GO_Central.
GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:TAIR.
GO; GO:0044212; F:transcription regulatory region DNA binding; IBA:GO_Central.
GO; GO:0008356; P:asymmetric cell division; IMP:TAIR.
GO; GO:0030154; P:cell differentiation; IBA:GO_Central.
GO; GO:0042742; P:defense response to bacterium; IMP:TAIR.
GO; GO:0050832; P:defense response to fungus; IMP:TAIR.
GO; GO:0009908; P:flower development; IEA:UniProtKB-KW.
GO; GO:0010338; P:leaf formation; IGI:TAIR.
GO; GO:0009965; P:leaf morphogenesis; IMP:TAIR.
GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IDA:TAIR.
GO; GO:0009944; P:polarity specification of adaxial/abaxial axis; IMP:TAIR.
GO; GO:0045088; P:regulation of innate immune response; IMP:TAIR.
GO; GO:0006357; P:regulation of transcription from RNA polymerase II promoter; IBA:GO_Central.
GO; GO:0009733; P:response to auxin; IEP:TAIR.
GO; GO:0046686; P:response to cadmium ion; IEP:TAIR.
GO; GO:0009739; P:response to gibberellin; IEP:TAIR.
GO; GO:0009753; P:response to jasmonic acid; IEP:TAIR.
GO; GO:0009751; P:response to salicylic acid; IEP:TAIR.
GO; GO:0009651; P:response to salt stress; IEP:TAIR.
GO; GO:0009615; P:response to virus; IMP:TAIR.
GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW.
CDD; cd00167; SANT; 2.
InterPro; IPR009057; Homeobox-like.
InterPro; IPR017930; Myb_dom.
InterPro; IPR031055; RS2/AS1.
InterPro; IPR001005; SANT/Myb.
PANTHER; PTHR10641:SF457; PTHR10641:SF457; 1.
SMART; SM00717; SANT; 2.
SUPFAM; SSF46689; SSF46689; 1.
PROSITE; PS51294; HTH_MYB; 2.
1: Evidence at protein level;
Coiled coil; Complete proteome; DNA-binding; Flowering; Nucleus;
Reference proteome; Repeat; Transcription; Transcription regulation.
CHAIN 1 367 Transcription factor AS1.
/FTId=PRO_0000197073.
DOMAIN 1 53 HTH myb-type 1. {ECO:0000255|PROSITE-
ProRule:PRU00625}.
DOMAIN 54 108 HTH myb-type 2. {ECO:0000255|PROSITE-
ProRule:PRU00625}.
DNA_BIND 27 53 H-T-H motif. {ECO:0000255|PROSITE-
ProRule:PRU00625}.
DNA_BIND 81 104 H-T-H motif. {ECO:0000255|PROSITE-
ProRule:PRU00625}.
COILED 260 344 {ECO:0000255}.
COMPBIAS 147 152 Poly-Ala.
SEQUENCE 367 AA; 42243 MW; 24D9085193E6088B CRC64;
MKERQRWSGE EDALLRAYVR QFGPREWHLV SERMNKPLNR DAKSCLERWK NYLKPGIKKG
SLTEEEQRLV IRLQEKHGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQQRE EKESNKRVEP
IDESKYDRIL ESFAEKLVKE RSNVVPAAAA AATVVMANSN GGFLHSEQQV QPPNPVIPPW
LATSNNGNNV VARPPSVTLT LSPSTVAAAA PQPPIPWLQQ QQPERAENGP GGLVLGSMMP
SCSGSSESVF LSELVECCRE LEEGHRAWAD HKKEAAWRLR RLELQLESEK TCRQREKMEE
IEAKMKALRE EQKNAMEKIE GEYREQLVGL RRDAEAKDQK LADQWTSRHI RLTKFLEQQM
GCRLDRP


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