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Transcription factor COE2 (Early B-cell factor 2) (EBF-2) (Metencephalon-mesencephalon-olfactory transcription factor 1) (MET-mesencephalon-olfactory TF1) (MET-mesencephalon-olfactory transcription factor 1) (Olf-1/EBF-like 3) (O/E-3) (OE-3)

 COE2_MOUSE              Reviewed;         575 AA.
O08792; Q543D5;
30-MAY-2000, integrated into UniProtKB/Swiss-Prot.
30-MAY-2000, sequence version 4.
25-APR-2018, entry version 141.
RecName: Full=Transcription factor COE2;
AltName: Full=Early B-cell factor 2;
Short=EBF-2;
AltName: Full=Metencephalon-mesencephalon-olfactory transcription factor 1;
Short=MET-mesencephalon-olfactory TF1;
Short=MET-mesencephalon-olfactory transcription factor 1;
AltName: Full=Olf-1/EBF-like 3;
Short=O/E-3;
Short=OE-3;
Name=Ebf2; Synonyms=Coe2, Mmot1;
Mus musculus (Mouse).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
NCBI_TaxID=10090;
[1]
NUCLEOTIDE SEQUENCE [MRNA], AND CHARACTERIZATION.
TISSUE=Embryo;
PubMed=9211912; DOI=10.1074/jbc.272.28.17632;
Malgaretti N., Pozzoli O., Bosetti A., Corradi A., Ciarmatori S.,
Panigada M., Bianchi M.E., Martinez S., Consalez G.G.;
"Mmot1, a new helix-loop-helix transcription factor gene displaying a
sharp expression boundary in the embryonic mouse brain.";
J. Biol. Chem. 272:17632-17639(1997).
[2]
NUCLEOTIDE SEQUENCE [MRNA], AND SUBUNIT.
STRAIN=CD-1; TISSUE=Embryo;
PubMed=9151732;
Wang S.S., Tsai R.Y.L., Reed R.R.;
"The characterization of the Olf-1/EBF-like HLH transcription factor
family: implications in olfactory gene regulation and neuronal
development.";
J. Neurosci. 17:4149-4158(1997).
[3]
NUCLEOTIDE SEQUENCE [MRNA].
TISSUE=Embryo;
PubMed=9389446;
DOI=10.1002/(SICI)1097-0177(199711)210:3<191::AID-AJA1>3.0.CO;2-B;
Garel S., Marin F., Mattei M.-G., Vesque C., Vincent A., Charnay P.;
"Family of Ebf/Olf-1-related genes potentially involved in neuronal
differentiation and regional specification in the central nervous
system.";
Dev. Dyn. 210:191-205(1997).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=C57BL/6J; TISSUE=Cerebellum, and Embryonic head;
PubMed=16141072; DOI=10.1126/science.1112014;
Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N.,
Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K.,
Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M.,
Davis M.J., Wilming L.G., Aidinis V., Allen J.E.,
Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L.,
Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M.,
Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R.,
Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G.,
di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G.,
Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M.,
Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E.,
Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N.,
Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T.,
Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H.,
Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K.,
Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J.,
Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L.,
Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K.,
Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P.,
Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O.,
Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G.,
Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M.,
Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C.,
Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y.,
Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B.,
Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K.,
Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A.,
Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K.,
Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C.,
Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J.,
Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y.,
Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T.,
Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N.,
Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N.,
Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S.,
Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J.,
Hayashizaki Y.;
"The transcriptional landscape of the mammalian genome.";
Science 309:1559-1563(2005).
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=C57BL/6J; TISSUE=Brain, and Olfactory epithelium;
PubMed=15489334; DOI=10.1101/gr.2596504;
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA
project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[6]
FUNCTION, AND DEVELOPMENTAL STAGE.
PubMed=16326388; DOI=10.1016/j.devcel.2005.10.009;
Kieslinger M., Folberth S., Dobreva G., Dorn T., Croci L., Erben R.,
Consalez G.G., Grosschedl R.;
"EBF2 regulates osteoblast-dependent differentiation of osteoclasts.";
Dev. Cell 9:757-767(2005).
-!- FUNCTION: Transcription factor that, in osteoblasts, activates the
decoy receptor for RANKL, TNFRSF11B, which in turn regulates
osteoclast differentiation. Acts in synergy with the Wnt-
responsive LEF1/CTNNB1 pathway. Recognizes variations of the
palindromic sequence 5'-ATTCCCNNGGGAATT-3'.
{ECO:0000269|PubMed:16326388}.
-!- SUBUNIT: Forms either a homodimer or a heterodimer with a related
family member. {ECO:0000269|PubMed:9151732}.
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
-!- TISSUE SPECIFICITY: In adult expressed in olfactory epithelium and
at a much lower level in Purkinje cells of the cerebellum. In
embryo expressed in epithalamus, in cells near the ventricular
zone of mesencephalon and on the ventral surface of
rhombencephalon, in the developing vomeronasal organ, at a lower
level in developing spinal cord. Not expressed in developing
retina, inner ear, dorsal root ganglia, trigeminal ganglia and
glossopharyngeal ganglia.
-!- DEVELOPMENTAL STAGE: First detected at 9.0 dpc in the first and
second archial arches. At 10.0 dpc and 10.5 dpc, expressed in
somites, especially the forming sclerotomes. At 12.5 dpc, found in
dorsal root ganglia. At 16.5 dpc, expressed in bone-forming areas
and adipose tissues, as well as in specific neural tissues. In
bone-forming areas, expressed along the mesenchymal condensation
at 14.5 dpc, in the perichondrium and in cells invading the
cartilagenous structures at 16.5 dpc. In 18.5 dpc tibias,
scattered throughout the trabecular/cancellous bone area. In
vitro, expression is induced during differentiation of immature
osteoblasts, and then declines. {ECO:0000269|PubMed:16326388}.
-!- SIMILARITY: Belongs to the COE family. {ECO:0000305}.
-!- SEQUENCE CAUTION:
Sequence=AAB58423.1; Type=Erroneous initiation; Evidence={ECO:0000305};
-----------------------------------------------------------------------
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EMBL; U71189; AAB58423.1; ALT_INIT; mRNA.
EMBL; U92703; AAB58323.1; -; mRNA.
EMBL; U82441; AAC64322.1; -; mRNA.
EMBL; AK053013; BAC35239.1; -; mRNA.
EMBL; AK139262; BAE23936.1; -; mRNA.
EMBL; BC049188; AAH49188.1; -; mRNA.
EMBL; BC050922; AAH50922.1; -; mRNA.
CCDS; CCDS27228.1; -.
RefSeq; NP_001263316.1; NM_001276387.1.
RefSeq; NP_034225.1; NM_010095.6.
RefSeq; XP_011243247.1; XM_011244945.2.
UniGene; Mm.319947; -.
UniGene; Mm.470952; -.
ProteinModelPortal; O08792; -.
SMR; O08792; -.
STRING; 10090.ENSMUSP00000022637; -.
iPTMnet; O08792; -.
PhosphoSitePlus; O08792; -.
MaxQB; O08792; -.
PaxDb; O08792; -.
PeptideAtlas; O08792; -.
PRIDE; O08792; -.
Ensembl; ENSMUST00000022637; ENSMUSP00000022637; ENSMUSG00000022053.
Ensembl; ENSMUST00000176029; ENSMUSP00000135782; ENSMUSG00000022053.
Ensembl; ENSMUST00000176161; ENSMUSP00000135500; ENSMUSG00000022053.
GeneID; 13592; -.
KEGG; mmu:13592; -.
UCSC; uc007ukw.2; mouse.
CTD; 64641; -.
MGI; MGI:894332; Ebf2.
eggNOG; KOG3836; Eukaryota.
eggNOG; ENOG410XQ9Z; LUCA.
GeneTree; ENSGT00390000014051; -.
HOGENOM; HOG000092311; -.
HOVERGEN; HBG005108; -.
InParanoid; O08792; -.
KO; K09103; -.
OMA; EYATPCI; -.
OrthoDB; EOG091G0A9D; -.
PhylomeDB; O08792; -.
TreeFam; TF313391; -.
ChiTaRS; Ebf2; mouse.
PRO; PR:O08792; -.
Proteomes; UP000000589; Chromosome 14.
Bgee; ENSMUSG00000022053; -.
CleanEx; MM_EBF2; -.
Genevisible; O08792; MM.
GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO; GO:0003682; F:chromatin binding; IDA:MGI.
GO; GO:0003677; F:DNA binding; IDA:MGI.
GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
GO; GO:0000978; F:RNA polymerase II proximal promoter sequence-specific DNA binding; IDA:NTNU_SB.
GO; GO:0001077; F:transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding; IDA:NTNU_SB.
GO; GO:0060612; P:adipose tissue development; IMP:MGI.
GO; GO:0050873; P:brown fat cell differentiation; IDA:MGI.
GO; GO:0001709; P:cell fate determination; IDA:MGI.
GO; GO:0035563; P:positive regulation of chromatin binding; IDA:MGI.
GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IDA:NTNU_SB.
GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IDA:MGI.
CDD; cd01175; IPT_COE; 1.
Gene3D; 2.60.40.10; -; 1.
Gene3D; 2.60.40.3180; -; 1.
Gene3D; 4.10.280.10; -; 2.
InterPro; IPR032200; COE_DBD.
InterPro; IPR038173; COE_DBD_sf.
InterPro; IPR032201; COE_HLH.
InterPro; IPR038006; COE_IPT.
InterPro; IPR036638; HLH_DNA-bd_sf.
InterPro; IPR013783; Ig-like_fold.
InterPro; IPR014756; Ig_E-set.
InterPro; IPR002909; IPT_dom.
InterPro; IPR003523; Transcription_factor_COE.
InterPro; IPR018350; Transcription_factor_COE_CS.
PANTHER; PTHR10747; PTHR10747; 1.
Pfam; PF16422; COE1_DBD; 1.
Pfam; PF16423; COE1_HLH; 1.
Pfam; PF01833; TIG; 1.
SMART; SM00429; IPT; 1.
SUPFAM; SSF81296; SSF81296; 1.
PROSITE; PS01345; COE; 1.
1: Evidence at protein level;
Activator; Complete proteome; Developmental protein; DNA-binding;
Metal-binding; Nucleus; Reference proteome; Transcription;
Transcription regulation; Zinc; Zinc-finger.
CHAIN 1 575 Transcription factor COE2.
/FTId=PRO_0000107829.
DOMAIN 253 336 IPT/TIG.
ZN_FING 150 169 C5-type. {ECO:0000255}.
REGION 62 65 Interaction with DNA. {ECO:0000250}.
REGION 196 203 Interaction with DNA. {ECO:0000250}.
REGION 235 238 Interaction with DNA. {ECO:0000250}.
COMPBIAS 453 534 Pro/Ser/Thr-rich.
SITE 162 162 Interaction with DNA. {ECO:0000250}.
SITE 171 171 Interaction with DNA. {ECO:0000250}.
CONFLICT 37 37 D -> V (in Ref. 3; AAC64322).
{ECO:0000305}.
SEQUENCE 575 AA; 62606 MW; E8CDD6DAC7637449 CRC64;
MFGIQDTLGR GPALKDKSLG AEMDSVRSWV RNVGVVDANV AAQSGVALSR AHFEKQPPSN
LRKSNFFHFV LALYDRQGQP VEIERTAFVD FVENDKEQGN EKTNNGTHYK LQLLYSNGVR
TEQDLYVRLI DSVTKQPIAY EGQNKNPEMC RVLLTHEVMC SRCCEKKSCG NRNETPSDPV
IIDRFFLKFF LKCNQNCLKT AGNPRDMRRF QVVLSTTVNV DGHVLAVSDN MFVHNNSKHG
RRARRLDPSE ATPCIKAISP SEGWTTGGAM VIIIGDNFFD GLQVVFGTML VWSELITPHA
IRVQTPPRHI PGVVEVTLSY KSKQFCKGAP GRFIYTALNE PTIDYGFQRL QKVIPRHPGD
PERLAKEMLL KRAADLVEAL YGTPHNNQDI ILKRAADIAE ALYSVPRNPS QIPALSSSPA
HSGMMGINSY GSQLGVSISE STQGNNQGYI RNTSSISPRG YSSSSTPQQS NYSTSSNSMN
GYSNVPMANL GVPGSPGFLN GSPTGSPYGI MSSSPTVGSS STSSILPFSS SVFPAVKQKS
AFAPVIRPQG SPSPACSSGN GNGFRAMTGL VVPPM


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