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Transcription factor E2FB (E2F transcription factor-1) (AtE2F1)

 E2FB_ARATH              Reviewed;         469 AA.
Q9FV71; Q9FMS8; Q9FNY1;
05-APR-2011, integrated into UniProtKB/Swiss-Prot.
01-MAR-2001, sequence version 1.
22-NOV-2017, entry version 131.
RecName: Full=Transcription factor E2FB;
AltName: Full=E2F transcription factor-1;
Short=AtE2F1;
Name=E2FB; Synonyms=E2F1; OrderedLocusNames=At5g22220; ORFNames=T6G21;
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), AND INTERACTION WITH DPA AND
DPB.
PubMed=11108847; DOI=10.1016/S0014-5793(00)02238-9;
Magyar Z., Atanassova A., De Veylder L., Rombauts S., Inze D.;
"Characterization of two distinct DP-related genes from Arabidopsis
thaliana.";
FEBS Lett. 486:79-87(2000).
[2]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), FUNCTION, INTERACTION WITH
MAIZE RBR1, AND DEVELOPMENTAL STAGE.
STRAIN=cv. Columbia;
PubMed=11669580; DOI=10.1023/A:1011848528377;
de Jager S.M., Menges M., Bauer U.M., Murra J.A.;
"Arabidopsis E2F1 binds a sequence present in the promoter of S-phase-
regulated gene AtCDC6 and is a member of a multigene family with
differential activities.";
Plant Mol. Biol. 47:555-568(2001).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=11130714; DOI=10.1038/35048507;
Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K.,
Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S.,
Nakazaki N., Naruo K., Okumura S., Shinpo S., Takeuchi C., Wada T.,
Watanabe A., Yamada M., Yasuda M., Sato S., de la Bastide M.,
Huang E., Spiegel L., Gnoj L., O'Shaughnessy A., Preston R.,
Habermann K., Murray J., Johnson D., Rohlfing T., Nelson J.,
Stoneking T., Pepin K., Spieth J., Sekhon M., Armstrong J., Becker M.,
Belter E., Cordum H., Cordes M., Courtney L., Courtney W., Dante M.,
Du H., Edwards J., Fryman J., Haakensen B., Lamar E., Latreille P.,
Leonard S., Meyer R., Mulvaney E., Ozersky P., Riley A., Strowmatt C.,
Wagner-McPherson C., Wollam A., Yoakum M., Bell M., Dedhia N.,
Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D., Baker J.,
Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S.,
Langham S.-A., McCullagh B., Robben J., Grymonprez B., Zimmermann W.,
Ramsperger U., Wedler H., Balke K., Wedler E., Peters S.,
van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R.,
Weitzenegger T., Bothe G., Rose M., Hauf J., Berneiser S., Hempel S.,
Feldpausch M., Lamberth S., Villarroel R., Gielen J., Ardiles W.,
Bents O., Lemcke K., Kolesov G., Mayer K.F.X., Rudd S., Schoof H.,
Schueller C., Zaccaria P., Mewes H.-W., Bevan M., Fransz P.F.;
"Sequence and analysis of chromosome 5 of the plant Arabidopsis
thaliana.";
Nature 408:823-826(2000).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA] OF 62-469.
PubMed=9501997; DOI=10.1093/dnares/4.6.401;
Nakamura Y., Sato S., Kaneko T., Kotani H., Asamizu E., Miyajima N.,
Tabata S.;
"Structural analysis of Arabidopsis thaliana chromosome 5. III.
Sequence features of the regions of 1,191,918 bp covered by seventeen
physically assigned P1 clones.";
DNA Res. 4:401-414(1997).
[5]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
The Arabidopsis Information Portal (Araport);
Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
[6]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
STRAIN=cv. Columbia;
PubMed=14593172; DOI=10.1126/science.1088305;
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J.,
Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F.,
Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.,
Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J.,
Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y.,
Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P.,
Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F.,
Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M.,
Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J.,
Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T.,
Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y.,
Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis
genome.";
Science 302:842-846(2003).
[7]
FUNCTION, INTERACTION WITH DPA AND DPB, DEVELOPMENTAL STAGE, GENE
FAMILY, AND NOMENCLATURE.
PubMed=11786543; DOI=10.1074/jbc.M110616200;
Mariconti L., Pellegrini B., Cantoni R., Stevens R., Bergounioux C.,
Cella R., Albani D.;
"The E2F family of transcription factors from Arabidopsis thaliana.
Novel and conserved components of the retinoblastoma/E2F pathway in
plants.";
J. Biol. Chem. 277:9911-9919(2002).
[8]
FUNCTION, AND INTERACTION WITH PURA1.
PubMed=11862494; DOI=10.1007/s00438-001-0624-7;
Rossignol P., Stevens R., Perennes C., Jasinski S., Cella R.,
Tremousaygue D., Bergounioux C.;
"AtE2F-a and AtDP-a, members of the E2F family of transcription
factors, induce Arabidopsis leaf cells to re-enter S phase.";
Mol. Genet. Genomics 266:995-1003(2002).
[9]
GENE FAMILY, AND NOMENCLATURE.
PubMed=11971144; DOI=10.1105/tpc.010445;
Vandepoele K., Raes J., de Veylder L., Rouze P., Rombauts S., Inze D.;
"Genome-wide analysis of core cell cycle genes in Arabidopsis.";
Plant Cell 14:903-916(2002).
[10]
FUNCTION, SUBCELLULAR LOCATION, AND INTERACTION WITH DPA AND DPB.
STRAIN=cv. Columbia;
PubMed=11891240; DOI=10.1104/pp.010642;
Kosugi S., Ohashi Y.;
"Interaction of the Arabidopsis E2F and DP proteins confers their
concomitant nuclear translocation and transactivation.";
Plant Physiol. 128:833-843(2002).
[11]
FUNCTION.
PubMed=12913157; DOI=10.1104/pp.103.025080;
Kosugi S., Ohashi Y.;
"Constitutive E2F expression in tobacco plants exhibits altered cell
cycle control and morphological change in a cell type-specific
manner.";
Plant Physiol. 132:2012-2022(2003).
[12]
FUNCTION, INDUCTION BY AUXIN, PHOSPHORYLATION, AND INTERACTION WITH
DPA AND RBR1.
PubMed=16055635; DOI=10.1105/tpc.105.033761;
Magyar Z., De Veylder L., Atanassova A., Bako L., Inze D., Boegre L.;
"The role of the Arabidopsis E2FB transcription factor in regulating
auxin-dependent cell division.";
Plant Cell 17:2527-2541(2005).
[13]
FUNCTION, TISSUE SPECIFICITY, SUBCELLULAR LOCATION, INDUCTION, AND
DEVELOPMENTAL STAGE.
PubMed=16514015; DOI=10.1104/pp.106.077990;
Sozzani R., Maggio C., Varotto S., Canova S., Bergounioux C.,
Albani D., Cella R.;
"Interplay between Arabidopsis activating factors E2Fb and E2Fa in
cell cycle progression and development.";
Plant Physiol. 140:1355-1366(2006).
[14]
INDUCTION BY LIGHT.
PubMed=18424613; DOI=10.1105/tpc.107.057075;
Lopez-Juez E., Dillon E., Magyar Z., Khan S., Hazeldine S.,
de Jager S.M., Murray J.A., Beemster G.T., Boegre L., Shanahan H.;
"Distinct light-initiated gene expression and cell cycle programs in
the shoot apex and cotyledons of Arabidopsis.";
Plant Cell 20:947-968(2008).
[15]
INTERACTION WITH MYB3R4.
STRAIN=cv. Columbia;
PubMed=26069325; DOI=10.15252/embj.201490899;
Kobayashi K., Suzuki T., Iwata E., Nakamichi N., Suzuki T., Chen P.,
Ohtani M., Ishida T., Hosoya H., Mueller S., Leviczky T.,
Pettko-Szandtner A., Darula Z., Iwamoto A., Nomoto M., Tada Y.,
Higashiyama T., Demura T., Doonan J.H., Hauser M.T., Sugimoto K.,
Umeda M., Magyar Z., Boegre L., Ito M.;
"Transcriptional repression by MYB3R proteins regulates plant organ
growth.";
EMBO J. 34:1992-2007(2015).
-!- FUNCTION: Transcription activator that binds DNA cooperatively
with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-
3' found in the promoter region of a number of genes whose
products are involved in cell cycle regulation or in DNA
replication. The binding of retinoblastoma-related proteins
represses transactivation. Involved in the control of cell-cycle
progression from G1 to S phase and from G2 to M phase. Stimulates
cell proliferation and delays differentiation. Represses cell
enlargement and endoreduplication in auxin-free conditions.
{ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543,
ECO:0000269|PubMed:11862494, ECO:0000269|PubMed:11891240,
ECO:0000269|PubMed:12913157, ECO:0000269|PubMed:16055635,
ECO:0000269|PubMed:16514015}.
-!- SUBUNIT: Heterodimer with DP proteins. Interacts (via dimerization
domain) preferentially with DPA, but also with DPB. Interacts with
PURA1 and retinoblastoma-related protein RBR1. Component of a
DREAM-like complex which modulates a variety of developmentally
regulated genes and of the mitotic genes in proliferating and
differentiated cells. Interacts with MYB3R4 only at early stages
of leaves development (PubMed:26069325).
{ECO:0000269|PubMed:11108847, ECO:0000269|PubMed:11669580,
ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11862494,
ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16055635,
ECO:0000269|PubMed:26069325}.
-!- INTERACTION:
P42818:ATPK1; NbExp=3; IntAct=EBI-1774719, EBI-8107038;
Q9FNY3:DPA; NbExp=10; IntAct=EBI-1774719, EBI-1774763;
Q9FNY2:DPB; NbExp=6; IntAct=EBI-1774719, EBI-1774876;
Q9LKZ3:RBR1; NbExp=4; IntAct=EBI-1774719, EBI-398590;
-!- SUBCELLULAR LOCATION: Cytoplasm. Nucleus. Note=Interaction with
DPA induces an exclusive nuclear localization, but an interaction
with DPB has no effect.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=2;
Name=1;
IsoId=Q9FV71-1; Sequence=Displayed;
Name=2;
IsoId=Q9FV71-2; Sequence=VSP_040804;
Note=Derived from EST data. No experimental confirmation
available.;
-!- TISSUE SPECIFICITY: Expressed in proliferating cells and several
differentiated tissues. Detected in inflorescence and shoot apical
meristems, cotyledonary vascular tissues, leaf primordia, young
leaves, base of trichomes, central cylinder and elongation zone of
roots, lateral root primordia, flowers, pistils of immature
flowers and pollen grains. {ECO:0000269|PubMed:16514015}.
-!- DEVELOPMENTAL STAGE: Expressed in a cell cycle-dependent manner.
Most abundant at the G1/S transition. Lower but constant level in
the following phases. {ECO:0000269|PubMed:11669580,
ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:16514015}.
-!- INDUCTION: Up-regulated by light and by auxin. May be up-regulated
by E2FA. {ECO:0000269|PubMed:16055635,
ECO:0000269|PubMed:16514015, ECO:0000269|PubMed:18424613}.
-!- PTM: Phosphorylated. {ECO:0000269|PubMed:16055635}.
-!- SIMILARITY: Belongs to the E2F/DP family. {ECO:0000305}.
-!- SEQUENCE CAUTION:
Sequence=BAB17029.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
-----------------------------------------------------------------------
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EMBL; AJ294533; CAC15485.1; -; mRNA.
EMBL; AF242580; AAG17608.1; -; mRNA.
EMBL; AL589883; CAC34515.1; -; Genomic_DNA.
EMBL; AB007651; BAB17029.1; ALT_SEQ; Genomic_DNA.
EMBL; CP002688; AED92998.1; -; Genomic_DNA.
EMBL; CP002688; AED92999.1; -; Genomic_DNA.
EMBL; AY136479; AAM97144.1; -; mRNA.
EMBL; BT006610; AAP31954.1; -; mRNA.
RefSeq; NP_001031921.3; NM_001036844.3. [Q9FV71-2]
RefSeq; NP_568413.1; NM_122128.3. [Q9FV71-1]
UniGene; At.10189; -.
ProteinModelPortal; Q9FV71; -.
SMR; Q9FV71; -.
BioGrid; 17558; 9.
IntAct; Q9FV71; 11.
MINT; MINT-8050696; -.
STRING; 3702.AT5G22220.2; -.
iPTMnet; Q9FV71; -.
PaxDb; Q9FV71; -.
EnsemblPlants; AT5G22220.2; AT5G22220.2; AT5G22220. [Q9FV71-1]
EnsemblPlants; AT5G22220.3; AT5G22220.3; AT5G22220. [Q9FV71-2]
GeneID; 832283; -.
Gramene; AT5G22220.2; AT5G22220.2; AT5G22220.
Gramene; AT5G22220.3; AT5G22220.3; AT5G22220.
KEGG; ath:AT5G22220; -.
Araport; AT5G22220; -.
TAIR; locus:3685148; AT5G22220.
eggNOG; KOG2577; Eukaryota.
eggNOG; ENOG410XNYI; LUCA.
HOGENOM; HOG000232044; -.
KO; K06620; -.
OMA; TRRISWK; -.
OrthoDB; EOG09360AY6; -.
PhylomeDB; Q9FV71; -.
Reactome; R-ATH-1538133; G0 and Early G1.
Reactome; R-ATH-68689; CDC6 association with the ORC:origin complex.
Reactome; R-ATH-68911; G2 Phase.
Reactome; R-ATH-69298; Association of licensing factors with the pre-replicative complex.
Reactome; R-ATH-8953750; Transcriptional Regulation by E2F6.
PRO; PR:Q9FV71; -.
Proteomes; UP000006548; Chromosome 5.
ExpressionAtlas; Q9FV71; baseline and differential.
Genevisible; Q9FV71; AT.
GO; GO:0005737; C:cytoplasm; IDA:TAIR.
GO; GO:0005634; C:nucleus; IDA:TAIR.
GO; GO:0005667; C:transcription factor complex; IEA:InterPro.
GO; GO:0003677; F:DNA binding; IDA:UniProtKB.
GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IDA:TAIR.
GO; GO:0007049; P:cell cycle; IEA:UniProtKB-KW.
GO; GO:0008284; P:positive regulation of cell proliferation; IMP:UniProtKB.
GO; GO:0051446; P:positive regulation of meiotic cell cycle; IMP:TAIR.
GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IDA:UniProtKB.
GO; GO:0051302; P:regulation of cell division; IMP:TAIR.
GO; GO:0009733; P:response to auxin; IEP:TAIR.
GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW.
GO; GO:0010090; P:trichome morphogenesis; IMP:TAIR.
CDD; cd14660; E2F_DD; 1.
Gene3D; 1.10.10.10; -; 1.
InterPro; IPR015633; E2F.
InterPro; IPR037241; E2F-DP_heterodim.
InterPro; IPR032198; E2F_CC-MB.
InterPro; IPR003316; E2F_WHTH_DNA-bd_dom.
InterPro; IPR036388; WH-like_DNA-bd_sf.
InterPro; IPR036390; WH_DNA-bd_sf.
PANTHER; PTHR12081; PTHR12081; 1.
Pfam; PF16421; E2F_CC-MB; 1.
Pfam; PF02319; E2F_TDP; 1.
SMART; SM01372; E2F_TDP; 1.
SUPFAM; SSF144074; SSF144074; 1.
SUPFAM; SSF46785; SSF46785; 1.
1: Evidence at protein level;
Activator; Alternative splicing; Cell cycle; Coiled coil;
Complete proteome; Cytoplasm; DNA-binding; Nucleus;
Reference proteome; Transcription; Transcription regulation.
CHAIN 1 469 Transcription factor E2FB.
/FTId=PRO_0000406290.
DNA_BIND 129 194 {ECO:0000255}.
REGION 210 238 Leucine-zipper. {ECO:0000255}.
REGION 403 419 Retinoblastoma protein binding.
{ECO:0000255}.
COILED 202 246 {ECO:0000255}.
VAR_SEQ 423 426 SGPD -> Y (in isoform 2). {ECO:0000305}.
/FTId=VSP_040804.
CONFLICT 337 337 V -> E (in Ref. 1; CAC15485).
{ECO:0000305}.
SEQUENCE 469 AA; 51653 MW; ADE1104B34651B7C CRC64;
MSEEVPQQFP SSKRQLHPSL SSMKPPLVAP GEYHRFDAAE TRGGGAVADQ VVSDAIVIKS
TLKRKTDLVN QIVEVNELNT GVLQTPVSGK GGKAKKTSRS AKSNKSGTLA SGSNAGSPGN
NFAQAGTCRY DSSLGLLTKK FINLIKQAED GILDLNKAAD TLEVQKRRIY DITNVLEGIG
LIEKTLKNRI QWKGLDVSKP GETIESIANL QDEVQNLAAE EARLDDQIRE SQERLTSLSE
DENNKRLLFV TENDIKNLPC FQNKTLIAVK APHGTTLEVP DPDEAGGYQR RYRIILRSTM
GPIDVYLVSQ FEESFEDIPQ ADEPSNVPDE PSNVPDVPSN LPSTSGLPEN HDVSMPMKEE
STERNMETQE VDDTQRVYSD IESHDFVDGI MKIVPPDLDM GVDYWFRSEV GEVSITDMWP
DESGPDWNQM ITFDQDHAGP SDNKILEQPQ TPSSPTPEES TATRSPTGS


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