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Transcription factor GATA-6 (GATA-binding factor 6)

 GATA6_MOUSE             Reviewed;         589 AA.
Q61169; P97729; Q3UQJ2; Q9QZK3;
01-NOV-1997, integrated into UniProtKB/Swiss-Prot.
25-NOV-2008, sequence version 3.
05-DEC-2018, entry version 160.
RecName: Full=Transcription factor GATA-6;
AltName: Full=GATA-binding factor 6;
Name=Gata6;
Mus musculus (Mouse).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
NCBI_TaxID=10090;
[1]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2).
TISSUE=Heart;
PubMed=8660897; DOI=10.1006/dbio.1996.0165;
Morrisey E.E., Ip H.S., Lu M.M., Parmacek M.S.;
"GATA-6: a zinc finger transcription factor that is expressed in
multiple cell lineages derived from lateral mesoderm.";
Dev. Biol. 177:309-322(1996).
[2]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2).
STRAIN=C57BL/6 X DBA/2; TISSUE=Heart;
Katsuoka F., Motohashi H., Yamamoto M.;
Submitted (AUG-1999) to the EMBL/GenBank/DDBJ databases.
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
STRAIN=C57BL/6J; TISSUE=Lung;
PubMed=16141072; DOI=10.1126/science.1112014;
Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N.,
Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K.,
Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M.,
Davis M.J., Wilming L.G., Aidinis V., Allen J.E.,
Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L.,
Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M.,
Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R.,
Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G.,
di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G.,
Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M.,
Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E.,
Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N.,
Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T.,
Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H.,
Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K.,
Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J.,
Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L.,
Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K.,
Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P.,
Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O.,
Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G.,
Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M.,
Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C.,
Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y.,
Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B.,
Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K.,
Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A.,
Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K.,
Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C.,
Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J.,
Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y.,
Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T.,
Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N.,
Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N.,
Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S.,
Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J.,
Hayashizaki Y.;
"The transcriptional landscape of the mammalian genome.";
Science 309:1559-1563(2005).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Mural R.J., Adams M.D., Myers E.W., Smith H.O., Venter J.C.;
Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases.
[5]
NUCLEOTIDE SEQUENCE [MRNA] OF 384-589 (ISOFORM 1).
STRAIN=BALB/cJ; TISSUE=Heart;
PubMed=8812463; DOI=10.1006/geno.1996.0472;
Narita N., Heikinheimo M., Bielinska M., White R.A., Wilson D.B.;
"The gene for transcription factor GATA-6 resides on mouse chromosome
18 and is expressed in myocardium and vascular smooth muscle.";
Genomics 36:345-348(1996).
[6]
ALTERNATIVE INITIATION.
PubMed=10608869; DOI=10.1074/jbc.274.53.38004;
Brewer A., Gove C., Davies A., McNulty C., Barrow D., Koutsourakis M.,
Farzaneh F., Pizzey J., Bomford A., Patient R.;
"The human and mouse GATA-6 genes utilize two promoters and two
initiation codons.";
J. Biol. Chem. 274:38004-38016(1999).
[7]
FUNCTION, AND DNA-BINDING.
PubMed=15329343; DOI=10.1242/dev.01344;
Lee K.H., Evans S., Ruan T.Y., Lassar A.B.;
"SMAD-mediated modulation of YY1 activity regulates the BMP response
and cardiac-specific expression of a GATA4/5/6-dependent chick Nkx2.5
enhancer.";
Development 131:4709-4723(2004).
[8]
SUBCELLULAR LOCATION, INTERACTION WITH LMCD1, AND DOMAIN GATA-TYPE
ZINC-FINGER.
PubMed=16199866; DOI=10.1128/MCB.25.20.8864-8873.2005;
Rath N., Wang Z., Lu M.M., Morrisey E.E.;
"LMCD1/Dyxin is a novel transcriptional cofactor that restricts GATA6
function by inhibiting DNA binding.";
Mol. Cell. Biol. 25:8864-8873(2005).
[9]
FUNCTION.
PubMed=19666519; DOI=10.1073/pnas.0904744106;
Kodo K., Nishizawa T., Furutani M., Arai S., Yamamura E., Joo K.,
Takahashi T., Matsuoka R., Yamagishi H.;
"GATA6 mutations cause human cardiac outflow tract defects by
disrupting semaphorin-plexin signaling.";
Proc. Natl. Acad. Sci. U.S.A. 106:13933-13938(2009).
-!- FUNCTION: Transcriptional activator that regulates SEMA3C and
PLXNA2 (PubMed:19666519). May regulate genes that protect
epithelial cells from bacterial infection (By similarity).
Involved in gene regulation specifically in the gastric epithelium
(By similarity). Involved in bone morphogenetic protein (BMP)-
mediated cardiac-specific gene expression (PubMed:15329343). Binds
to BMP response element (BMPRE) DNA sequences within cardiac
activating regions (PubMed:15329343).
{ECO:0000250|UniProtKB:Q92908, ECO:0000269|PubMed:15329343,
ECO:0000269|PubMed:19666519}.
-!- SUBUNIT: Interacts with LMCD1. {ECO:0000269|PubMed:16199866}.
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:16199866}.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative initiation; Named isoforms=2;
Name=1;
IsoId=Q61169-1; Sequence=Displayed;
Name=2;
IsoId=Q61169-2; Sequence=VSP_035779;
Note=Produced by alternative initiation at Met-147 of isoform
1.;
-!- TISSUE SPECIFICITY: Expressed in myocardium, vascular smooth
muscle, gut epithelium, and osteoclasts.
-!- DOMAIN: The GATA-type zinc fingers mediate interaction with LMCD1.
{ECO:0000269|PubMed:16199866}.
-!- SEQUENCE CAUTION:
Sequence=AAB37426.1; Type=Frameshift; Positions=360, 368; Evidence={ECO:0000305};
Sequence=AAC52841.1; Type=Frameshift; Positions=572; Evidence={ECO:0000305};
-----------------------------------------------------------------------
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EMBL; S82462; AAB37426.1; ALT_FRAME; mRNA.
EMBL; AF179425; AAD55267.1; -; mRNA.
EMBL; AK142381; BAE25049.1; -; mRNA.
EMBL; CH466592; EDL22985.1; -; Genomic_DNA.
EMBL; U51335; AAC52841.1; ALT_FRAME; mRNA.
CCDS; CCDS29059.1; -. [Q61169-1]
RefSeq; NP_034388.2; NM_010258.3. [Q61169-1]
UniGene; Mm.329287; -.
ProteinModelPortal; Q61169; -.
SMR; Q61169; -.
BioGrid; 199843; 11.
IntAct; Q61169; 2.
MINT; Q61169; -.
STRING; 10090.ENSMUSP00000041774; -.
iPTMnet; Q61169; -.
PhosphoSitePlus; Q61169; -.
PaxDb; Q61169; -.
PeptideAtlas; Q61169; -.
PRIDE; Q61169; -.
DNASU; 14465; -.
Ensembl; ENSMUST00000047762; ENSMUSP00000041774; ENSMUSG00000005836. [Q61169-1]
GeneID; 14465; -.
KEGG; mmu:14465; -.
UCSC; uc008ebj.1; mouse. [Q61169-1]
CTD; 2627; -.
MGI; MGI:107516; Gata6.
eggNOG; KOG1601; Eukaryota.
eggNOG; COG5641; LUCA.
GeneTree; ENSGT00940000160814; -.
HOGENOM; HOG000047700; -.
HOVERGEN; HBG051703; -.
InParanoid; Q61169; -.
KO; K17897; -.
OMA; GAHPGWP; -.
OrthoDB; EOG091G0AUR; -.
PhylomeDB; Q61169; -.
TreeFam; TF315391; -.
Reactome; R-MMU-5683826; Surfactant metabolism.
Reactome; R-MMU-983231; Factors involved in megakaryocyte development and platelet production.
PRO; PR:Q61169; -.
Proteomes; UP000000589; Chromosome 18.
Bgee; ENSMUSG00000005836; Expressed in 205 organ(s), highest expression level in cardiac atrium.
CleanEx; MM_GATA6; -.
Genevisible; Q61169; MM.
GO; GO:0031965; C:nuclear membrane; ISO:MGI.
GO; GO:0005634; C:nucleus; IDA:MGI.
GO; GO:0005667; C:transcription factor complex; IDA:MGI.
GO; GO:0003682; F:chromatin binding; IDA:MGI.
GO; GO:0003677; F:DNA binding; IDA:MGI.
GO; GO:0003700; F:DNA-binding transcription factor activity; IDA:MGI.
GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; ISO:MGI.
GO; GO:0003690; F:double-stranded DNA binding; ISO:MGI.
GO; GO:0001158; F:enhancer sequence-specific DNA binding; ISO:MGI.
GO; GO:0019901; F:protein kinase binding; ISO:MGI.
GO; GO:0000978; F:RNA polymerase II proximal promoter sequence-specific DNA binding; IDA:MGI.
GO; GO:0001103; F:RNA polymerase II repressing transcription factor binding; IPI:BHF-UCL.
GO; GO:0043565; F:sequence-specific DNA binding; IDA:MGI.
GO; GO:0003705; F:transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding; IDA:MGI.
GO; GO:0008134; F:transcription factor binding; IPI:MGI.
GO; GO:0044212; F:transcription regulatory region DNA binding; ISO:MGI.
GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
GO; GO:0048645; P:animal organ formation; IMP:MGI.
GO; GO:0055007; P:cardiac muscle cell differentiation; IMP:MGI.
GO; GO:0014898; P:cardiac muscle hypertrophy in response to stress; IMP:MGI.
GO; GO:0048738; P:cardiac muscle tissue development; IGI:MGI.
GO; GO:0060947; P:cardiac vascular smooth muscle cell differentiation; ISO:MGI.
GO; GO:0071773; P:cellular response to BMP stimulus; IDA:MGI.
GO; GO:0071371; P:cellular response to gonadotropin stimulus; IDA:MGI.
GO; GO:0071456; P:cellular response to hypoxia; ISO:MGI.
GO; GO:0060486; P:Clara cell differentiation; IGI:MGI.
GO; GO:0035987; P:endodermal cell differentiation; IMP:MGI.
GO; GO:0007493; P:endodermal cell fate determination; IDA:MGI.
GO; GO:0030855; P:epithelial cell differentiation; IMP:MGI.
GO; GO:0001701; P:in utero embryonic development; IMP:MGI.
GO; GO:0060575; P:intestinal epithelial cell differentiation; ISO:MGI.
GO; GO:0001889; P:liver development; IMP:MGI.
GO; GO:0060430; P:lung saccule development; IGI:MGI.
GO; GO:0008584; P:male gonad development; IEA:Ensembl.
GO; GO:0043066; P:negative regulation of apoptotic process; ISO:MGI.
GO; GO:1902894; P:negative regulation of pri-miRNA transcription by RNA polymerase II; ISO:MGI.
GO; GO:0000122; P:negative regulation of transcription by RNA polymerase II; ISO:MGI.
GO; GO:0045892; P:negative regulation of transcription, DNA-templated; ISO:MGI.
GO; GO:0032911; P:negative regulation of transforming growth factor beta1 production; ISO:MGI.
GO; GO:0032912; P:negative regulation of transforming growth factor beta2 production; ISO:MGI.
GO; GO:0003148; P:outflow tract septum morphogenesis; ISO:MGI.
GO; GO:0031016; P:pancreas development; IMP:MGI.
GO; GO:0003310; P:pancreatic A cell differentiation; IMP:MGI.
GO; GO:0006644; P:phospholipid metabolic process; IGI:MGI.
GO; GO:0045766; P:positive regulation of angiogenesis; ISO:MGI.
GO; GO:0043065; P:positive regulation of apoptotic process; ISO:MGI.
GO; GO:0030513; P:positive regulation of BMP signaling pathway; ISO:MGI.
GO; GO:0010666; P:positive regulation of cardiac muscle cell apoptotic process; ISO:MGI.
GO; GO:0060045; P:positive regulation of cardiac muscle cell proliferation; IGI:MGI.
GO; GO:0110024; P:positive regulation of cardiac muscle myoblast proliferation; ISO:MGI.
GO; GO:0051891; P:positive regulation of cardioblast differentiation; IEP:BHF-UCL.
GO; GO:0071158; P:positive regulation of cell cycle arrest; ISO:MGI.
GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IDA:MGI.
GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IDA:MGI.
GO; GO:0010468; P:regulation of gene expression; IGI:MGI.
GO; GO:0042493; P:response to drug; ISO:MGI.
GO; GO:0043627; P:response to estrogen; IDA:MGI.
GO; GO:0070848; P:response to growth factor; ISO:MGI.
GO; GO:0051145; P:smooth muscle cell differentiation; ISO:MGI.
GO; GO:0006366; P:transcription by RNA polymerase II; ISO:MGI.
GO; GO:0035239; P:tube morphogenesis; IGI:MGI.
GO; GO:0003309; P:type B pancreatic cell differentiation; IMP:MGI.
GO; GO:0060510; P:type II pneumocyte differentiation; IGI:MGI.
CDD; cd00202; ZnF_GATA; 2.
Gene3D; 3.30.50.10; -; 2.
InterPro; IPR008013; GATA_N.
InterPro; IPR016375; TF_GATA_4/5/6.
InterPro; IPR039355; Transcription_factor_GATA.
InterPro; IPR000679; Znf_GATA.
InterPro; IPR013088; Znf_NHR/GATA.
PANTHER; PTHR10071; PTHR10071; 1.
Pfam; PF00320; GATA; 2.
Pfam; PF05349; GATA-N; 1.
PIRSF; PIRSF003028; TF_GATA_4/5/6; 1.
PRINTS; PR00619; GATAZNFINGER.
SMART; SM00401; ZnF_GATA; 2.
PROSITE; PS00344; GATA_ZN_FINGER_1; 2.
PROSITE; PS50114; GATA_ZN_FINGER_2; 2.
1: Evidence at protein level;
Activator; Alternative initiation; Complete proteome; DNA-binding;
Isopeptide bond; Metal-binding; Nucleus; Phosphoprotein;
Reference proteome; Repeat; Transcription; Transcription regulation;
Ubl conjugation; Zinc; Zinc-finger.
CHAIN 1 589 Transcription factor GATA-6.
/FTId=PRO_0000083424.
ZN_FING 384 408 GATA-type 1. {ECO:0000255|PROSITE-
ProRule:PRU00094}.
ZN_FING 438 462 GATA-type 2. {ECO:0000255|PROSITE-
ProRule:PRU00094}.
COMPBIAS 173 183 Poly-Ala.
COMPBIAS 322 328 Poly-His.
COMPBIAS 443 447 Poly-Thr.
MOD_RES 266 266 Phosphoserine.
{ECO:0000250|UniProtKB:Q92908}.
CROSSLNK 423 423 Glycyl lysine isopeptide (Lys-Gly)
(interchain with G-Cter in SUMO2).
{ECO:0000250|UniProtKB:Q92908}.
CROSSLNK 467 467 Glycyl lysine isopeptide (Lys-Gly)
(interchain with G-Cter in SUMO2).
{ECO:0000250|UniProtKB:Q92908}.
CROSSLNK 478 478 Glycyl lysine isopeptide (Lys-Gly)
(interchain with G-Cter in SUMO2).
{ECO:0000250|UniProtKB:Q92908}.
VAR_SEQ 1 146 Missing (in isoform 2).
{ECO:0000303|PubMed:8660897,
ECO:0000303|Ref.2}.
/FTId=VSP_035779.
CONFLICT 297 297 S -> T (in Ref. 1; AAB37426).
{ECO:0000305}.
CONFLICT 416 416 G -> A (in Ref. 5; AAC52841).
{ECO:0000305}.
CONFLICT 536 536 G -> R (in Ref. 5; AAC52841).
{ECO:0000305}.
CONFLICT 538 538 Missing (in Ref. 5; AAC52841).
{ECO:0000305}.
CONFLICT 546 546 N -> K (in Ref. 5; AAC52841).
{ECO:0000305}.
CONFLICT 589 589 A -> V (in Ref. 1; AAB37426 and 2;
AAD55267). {ECO:0000305}.
SEQUENCE 589 AA; 59307 MW; 1A55474DA65EC6ED CRC64;
MALTDGGWCL PKRFGAAAAD AGDSGPFPAR EPSSPLSPIS SSSSSCSRGG DRGPCGASNC
RTPQLDAEAV AGPPGRSLLL SPYASHPFAA AHGAAAPGVA GPGSALSTWE DLLLFTDLDQ
AATASKLLWS SRGAKLSPFA AEQPEEMYQT LAALSSQGPA AYDGAPGGFV HSAAAAAAAA
AAASSPVYVP TTRVGSMLSG LPYLQGAGSG PSNHAGGAGA HPGWSQASAD SPPYGGGGAA
GGGAAGPGGA GSATAHASAR FPYSPSPPMA NGAARDPGGY VAAGGTGAGS VSGGGGSLAA
MGGREHQYSS LSAARPLNGT YHHHHHHHPT YSPYMAAPLT PAWPAGPFET PVLHSLQGRA
GAPLPVPRGP STDLLEDLSE SRECVNCGSI QTPLWRRDGT GHYLCNACGL YSKMNGLSRP
LIKPQKRVPS SRRLGLSCAN CHTTTTTLWR RNAEGEPVCN ACGLYMKLHG VPRPLAMKKE
GIQTRKRKPK NINKSKACSG NSSGSVPMTP TSSSSNSDDC TKNTSPSTQA TTSGVGASVM
SAVGENANPE NSDLKYSGQD GLYIGVSLSS PAEVTSSVRQ DSWCALALA


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