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Transcription factor HES-5 (Class B basic helix-loop-helix protein 38) (bHLHb38) (Hairy and enhancer of split 5)

 HES5_HUMAN              Reviewed;         166 AA.
Q5TA89; B9DI85;
12-DEC-2006, integrated into UniProtKB/Swiss-Prot.
21-DEC-2004, sequence version 1.
25-APR-2018, entry version 109.
RecName: Full=Transcription factor HES-5;
AltName: Full=Class B basic helix-loop-helix protein 38;
Short=bHLHb38;
AltName: Full=Hairy and enhancer of split 5;
Name=HES5; Synonyms=BHLHB38;
Homo sapiens (Human).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
NCBI_TaxID=9606;
[1]
NUCLEOTIDE SEQUENCE [MRNA].
Wistow G.;
Submitted (NOV-2005) to the EMBL/GenBank/DDBJ databases.
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
PubMed=16710414; DOI=10.1038/nature04727;
Gregory S.G., Barlow K.F., McLay K.E., Kaul R., Swarbreck D.,
Dunham A., Scott C.E., Howe K.L., Woodfine K., Spencer C.C.A.,
Jones M.C., Gillson C., Searle S., Zhou Y., Kokocinski F.,
McDonald L., Evans R., Phillips K., Atkinson A., Cooper R., Jones C.,
Hall R.E., Andrews T.D., Lloyd C., Ainscough R., Almeida J.P.,
Ambrose K.D., Anderson F., Andrew R.W., Ashwell R.I.S., Aubin K.,
Babbage A.K., Bagguley C.L., Bailey J., Beasley H., Bethel G.,
Bird C.P., Bray-Allen S., Brown J.Y., Brown A.J., Buckley D.,
Burton J., Bye J., Carder C., Chapman J.C., Clark S.Y., Clarke G.,
Clee C., Cobley V., Collier R.E., Corby N., Coville G.J., Davies J.,
Deadman R., Dunn M., Earthrowl M., Ellington A.G., Errington H.,
Frankish A., Frankland J., French L., Garner P., Garnett J., Gay L.,
Ghori M.R.J., Gibson R., Gilby L.M., Gillett W., Glithero R.J.,
Grafham D.V., Griffiths C., Griffiths-Jones S., Grocock R.,
Hammond S., Harrison E.S.I., Hart E., Haugen E., Heath P.D.,
Holmes S., Holt K., Howden P.J., Hunt A.R., Hunt S.E., Hunter G.,
Isherwood J., James R., Johnson C., Johnson D., Joy A., Kay M.,
Kershaw J.K., Kibukawa M., Kimberley A.M., King A., Knights A.J.,
Lad H., Laird G., Lawlor S., Leongamornlert D.A., Lloyd D.M.,
Loveland J., Lovell J., Lush M.J., Lyne R., Martin S.,
Mashreghi-Mohammadi M., Matthews L., Matthews N.S.W., McLaren S.,
Milne S., Mistry S., Moore M.J.F., Nickerson T., O'Dell C.N.,
Oliver K., Palmeiri A., Palmer S.A., Parker A., Patel D., Pearce A.V.,
Peck A.I., Pelan S., Phelps K., Phillimore B.J., Plumb R., Rajan J.,
Raymond C., Rouse G., Saenphimmachak C., Sehra H.K., Sheridan E.,
Shownkeen R., Sims S., Skuce C.D., Smith M., Steward C.,
Subramanian S., Sycamore N., Tracey A., Tromans A., Van Helmond Z.,
Wall M., Wallis J.M., White S., Whitehead S.L., Wilkinson J.E.,
Willey D.L., Williams H., Wilming L., Wray P.W., Wu Z., Coulson A.,
Vaudin M., Sulston J.E., Durbin R.M., Hubbard T., Wooster R.,
Dunham I., Carter N.P., McVean G., Ross M.T., Harrow J., Olson M.V.,
Beck S., Rogers J., Bentley D.R.;
"The DNA sequence and biological annotation of human chromosome 1.";
Nature 441:315-321(2006).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L.,
Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R.,
Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V.,
Hannenhalli S., Turner R., Yooseph S., Lu F., Nusskern D.R.,
Shue B.C., Zheng X.H., Zhong F., Delcher A.L., Huson D.H.,
Kravitz S.A., Mouchard L., Reinert K., Remington K.A., Clark A.G.,
Waterman M.S., Eichler E.E., Adams M.D., Hunkapiller M.W., Myers E.W.,
Venter J.C.;
Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases.
[4]
IDENTIFICATION, AND TISSUE SPECIFICITY.
PubMed=15254753;
Katoh M., Katoh M.;
"Identification and characterization of human HES2, HES3, and HES5
genes in silico.";
Int. J. Oncol. 25:529-534(2004).
-!- FUNCTION: Transcriptional repressor of genes that require a bHLH
protein for their transcription. Plays an important role as
neurogenesis negative regulator (By similarity). {ECO:0000250}.
-!- SUBUNIT: Transcription repression requires formation of a complex
with a corepressor protein of the Groucho/TLE family.
{ECO:0000250}.
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-
ProRule:PRU00380, ECO:0000255|PROSITE-ProRule:PRU00981}.
-!- TISSUE SPECIFICITY: Expressed in fetal heart and brain tumors.
{ECO:0000269|PubMed:15254753}.
-!- DOMAIN: Has a particular type of basic domain (presence of a
helix-interrupting proline) that binds to the N-box (CACNAG),
rather than the canonical E-box (CANNTG). {ECO:0000250}.
-!- DOMAIN: The C-terminal WRPW motif is a transcriptional repression
domain necessary for the interaction with Groucho/TLE family
members, transcriptional corepressors recruited to specific target
DNA by Hairy-related proteins. {ECO:0000250}.
-----------------------------------------------------------------------
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EMBL; DQ272660; ABB83829.1; -; mRNA.
EMBL; AL139246; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; CH471183; EAW56096.1; -; Genomic_DNA.
CCDS; CCDS41233.1; -.
RefSeq; NP_001010926.1; NM_001010926.3.
UniGene; Hs.57971; -.
ProteinModelPortal; Q5TA89; -.
SMR; Q5TA89; -.
BioGrid; 132759; 4.
STRING; 9606.ENSP00000367714; -.
iPTMnet; Q5TA89; -.
PhosphoSitePlus; Q5TA89; -.
BioMuta; HES5; -.
DMDM; 74745795; -.
PaxDb; Q5TA89; -.
PRIDE; Q5TA89; -.
Ensembl; ENST00000378453; ENSP00000367714; ENSG00000197921.
Ensembl; ENST00000612705; ENSP00000482150; ENSG00000273529.
GeneID; 388585; -.
KEGG; hsa:388585; -.
UCSC; uc001ajn.3; human.
CTD; 388585; -.
DisGeNET; 388585; -.
EuPathDB; HostDB:ENSG00000197921.5; -.
GeneCards; HES5; -.
HGNC; HGNC:19764; HES5.
HPA; HPA065458; -.
MIM; 607348; gene.
neXtProt; NX_Q5TA89; -.
OpenTargets; ENSG00000197921; -.
PharmGKB; PA134967985; -.
eggNOG; ENOG410IWTV; Eukaryota.
eggNOG; ENOG41120DD; LUCA.
GeneTree; ENSGT00910000144201; -.
HOGENOM; HOG000236346; -.
HOVERGEN; HBG005960; -.
InParanoid; Q5TA89; -.
KO; K06055; -.
OMA; SWCLKEA; -.
OrthoDB; EOG091G0V3D; -.
PhylomeDB; Q5TA89; -.
TreeFam; TF351373; -.
Reactome; R-HSA-2122947; NOTCH1 Intracellular Domain Regulates Transcription.
Reactome; R-HSA-2197563; NOTCH2 intracellular domain regulates transcription.
Reactome; R-HSA-2644606; Constitutive Signaling by NOTCH1 PEST Domain Mutants.
Reactome; R-HSA-2894862; Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants.
Reactome; R-HSA-9013508; NOTCH3 Intracellular Domain Regulates Transcription.
GeneWiki; HES5; -.
GenomeRNAi; 388585; -.
PRO; PR:Q5TA89; -.
Proteomes; UP000005640; Chromosome 1.
Bgee; ENSG00000197921; -.
CleanEx; HS_HES5; -.
Genevisible; Q5TA89; HS.
GO; GO:0005654; C:nucleoplasm; TAS:Reactome.
GO; GO:0003682; F:chromatin binding; IEA:Ensembl.
GO; GO:0003690; F:double-stranded DNA binding; IEA:Ensembl.
GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
GO; GO:0000981; F:RNA polymerase II transcription factor activity, sequence-specific DNA binding; ISM:NTNU_SB.
GO; GO:0008134; F:transcription factor binding; NAS:UniProtKB.
GO; GO:0001078; F:transcriptional repressor activity, RNA polymerase II proximal promoter sequence-specific DNA binding; ISS:UniProtKB.
GO; GO:0048708; P:astrocyte differentiation; ISS:UniProtKB.
GO; GO:0042668; P:auditory receptor cell fate determination; IEA:Ensembl.
GO; GO:0007420; P:brain development; ISS:UniProtKB.
GO; GO:0043010; P:camera-type eye development; ISS:UniProtKB.
GO; GO:0051216; P:cartilage development; IDA:UniProtKB.
GO; GO:0007155; P:cell adhesion; ISS:UniProtKB.
GO; GO:0048469; P:cell maturation; ISS:UniProtKB.
GO; GO:0022010; P:central nervous system myelination; ISS:UniProtKB.
GO; GO:0072049; P:comma-shaped body morphogenesis; IEA:Ensembl.
GO; GO:0090162; P:establishment of epithelial cell polarity; IEA:Ensembl.
GO; GO:0021861; P:forebrain radial glial cell differentiation; IEA:Ensembl.
GO; GO:0021781; P:glial cell fate commitment; ISS:UniProtKB.
GO; GO:0042491; P:inner ear auditory receptor cell differentiation; ISS:UniProtKB.
GO; GO:0060122; P:inner ear receptor cell stereocilium organization; IEA:Ensembl.
GO; GO:0072282; P:metanephric nephron tubule morphogenesis; IEA:Ensembl.
GO; GO:0048712; P:negative regulation of astrocyte differentiation; ISS:UniProtKB.
GO; GO:2000978; P:negative regulation of forebrain neuron differentiation; IEA:Ensembl.
GO; GO:2000981; P:negative regulation of inner ear receptor cell differentiation; IEA:Ensembl.
GO; GO:0045665; P:negative regulation of neuron differentiation; ISS:UniProtKB.
GO; GO:0048715; P:negative regulation of oligodendrocyte differentiation; ISS:UniProtKB.
GO; GO:2000974; P:negative regulation of pro-B cell differentiation; ISS:UniProtKB.
GO; GO:2000737; P:negative regulation of stem cell differentiation; IMP:UniProtKB.
GO; GO:0000122; P:negative regulation of transcription by RNA polymerase II; ISS:UniProtKB.
GO; GO:0021915; P:neural tube development; ISS:UniProtKB.
GO; GO:0097150; P:neuronal stem cell population maintenance; IEP:UniProtKB.
GO; GO:0007219; P:Notch signaling pathway; IMP:UniProtKB.
GO; GO:0014003; P:oligodendrocyte development; ISS:UniProtKB.
GO; GO:0030513; P:positive regulation of BMP signaling pathway; ISS:UniProtKB.
GO; GO:0008284; P:positive regulation of cell proliferation; IMP:UniProtKB.
GO; GO:0046427; P:positive regulation of JAK-STAT cascade; ISS:UniProtKB.
GO; GO:0045747; P:positive regulation of Notch signaling pathway; IEA:Ensembl.
GO; GO:0048661; P:positive regulation of smooth muscle cell proliferation; IGI:UniProtKB.
GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IEA:Ensembl.
GO; GO:0045893; P:positive regulation of transcription, DNA-templated; ISS:UniProtKB.
GO; GO:0042531; P:positive regulation of tyrosine phosphorylation of STAT protein; ISS:UniProtKB.
GO; GO:0065003; P:protein-containing complex assembly; ISS:UniProtKB.
GO; GO:0045595; P:regulation of cell differentiation; ISS:UniProtKB.
GO; GO:0050678; P:regulation of epithelial cell proliferation; IEA:Ensembl.
GO; GO:0045607; P:regulation of inner ear auditory receptor cell differentiation; IEA:Ensembl.
GO; GO:0031641; P:regulation of myelination; ISS:UniProtKB.
GO; GO:0050767; P:regulation of neurogenesis; ISS:UniProtKB.
GO; GO:0072050; P:S-shaped body morphogenesis; IEA:Ensembl.
GO; GO:0007224; P:smoothened signaling pathway; ISS:UniProtKB.
GO; GO:0072086; P:specification of loop of Henle identity; IEA:Ensembl.
GO; GO:0021537; P:telencephalon development; ISS:UniProtKB.
GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW.
CDD; cd00083; HLH; 1.
Gene3D; 4.10.280.10; -; 1.
InterPro; IPR011598; bHLH_dom.
InterPro; IPR036638; HLH_DNA-bd_sf.
InterPro; IPR003650; Orange_dom.
Pfam; PF07527; Hairy_orange; 1.
Pfam; PF00010; HLH; 1.
SMART; SM00353; HLH; 1.
SMART; SM00511; ORANGE; 1.
SUPFAM; SSF47459; SSF47459; 1.
PROSITE; PS50888; BHLH; 1.
PROSITE; PS51054; ORANGE; 1.
2: Evidence at transcript level;
Complete proteome; Developmental protein; Differentiation;
DNA-binding; Neurogenesis; Nucleus; Reference proteome; Repressor;
Transcription; Transcription regulation.
CHAIN 1 166 Transcription factor HES-5.
/FTId=PRO_0000269175.
DOMAIN 16 72 bHLH. {ECO:0000255|PROSITE-
ProRule:PRU00981}.
DOMAIN 88 119 Orange. {ECO:0000255|PROSITE-
ProRule:PRU00380}.
MOTIF 163 166 WRPW motif.
COMPBIAS 14 31 Arg/Lys-rich (basic).
COMPBIAS 122 142 Pro-rich.
COMPBIAS 147 153 Poly-Ala.
SEQUENCE 166 AA; 18226 MW; 6B0ECF2482EBE43B CRC64;
MAPSTVAVEL LSPKEKNRLR KPVVEKMRRD RINSSIEQLK LLLEQEFARH QPNSKLEKAD
ILEMAVSYLK HSKAFVAAAG PKSLHQDYSE GYSWCLQEAV QFLTLHAASD TQMKLLYHFQ
RPPAAPAAPA KEPKAPGAAP PPALSAKATA AAAAAHQPAC GLWRPW


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