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Transcription factor MYB26 (Myb-related protein 26) (AtMYB26) (Protein MALE STERILE 35)

 MYB26_ARATH             Reviewed;         367 AA.
Q9SPG3; A0MEW0; Q9LVL0;
27-MAY-2015, integrated into UniProtKB/Swiss-Prot.
01-MAY-2000, sequence version 1.
25-OCT-2017, entry version 140.
RecName: Full=Transcription factor MYB26 {ECO:0000305};
AltName: Full=Myb-related protein 26 {ECO:0000305};
Short=AtMYB26 {ECO:0000303|PubMed:11597504};
AltName: Full=Protein MALE STERILE 35 {ECO:0000303|PubMed:12753590};
Name=MYB26 {ECO:0000303|PubMed:11597504};
Synonyms=MS35 {ECO:0000303|PubMed:12753590};
OrderedLocusNames=At3g13890 {ECO:0000312|Araport:AT3G13890};
ORFNames=MDC16.1 {ECO:0000312|EMBL:BAB02319.1};
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), GENE FAMILY, AND NOMENCLATURE.
PubMed=11597504; DOI=10.1016/S1369-5266(00)00199-0;
Stracke R., Werber M., Weisshaar B.;
"The R2R3-MYB gene family in Arabidopsis thaliana.";
Curr. Opin. Plant Biol. 4:447-456(2001).
[2]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2).
Qu L., Gu H.;
"The MYB transcription factor family in Arabidopsis: a genome-wide
cloning and expression pattern analysis.";
Submitted (JAN-2004) to the EMBL/GenBank/DDBJ databases.
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=10819329; DOI=10.1093/dnares/7.2.131;
Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.;
"Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence
features of the regions of 4,504,864 bp covered by sixty P1 and TAC
clones.";
DNA Res. 7:131-135(2000).
[4]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
The Arabidopsis Information Portal (Araport);
Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
STRAIN=cv. Columbia;
PubMed=17147637; DOI=10.1111/j.1467-7652.2006.00183.x;
Underwood B.A., Vanderhaeghen R., Whitford R., Town C.D., Hilson P.;
"Simultaneous high-throughput recombinational cloning of open reading
frames in closed and open configurations.";
Plant Biotechnol. J. 4:317-324(2006).
[6]
FUNCTION, TISSUE SPECIFICITY, AND DISRUPTION PHENOTYPE.
PubMed=12753590; DOI=10.1046/j.1365-313X.2003.01745.x;
Steiner-Lange S., Unte U.S., Eckstein L., Yang C., Wilson Z.A.,
Schmelzer E., Dekker K., Saedler H.;
"Disruption of Arabidopsis thaliana MYB26 results in male sterility
due to non-dehiscent anthers.";
Plant J. 34:519-528(2003).
[7]
FUNCTION.
PubMed=17147638; DOI=10.1111/j.1467-7652.2006.00184.x;
Mitsuda N., Hiratsu K., Todaka D., Nakashima K.,
Yamaguchi-Shinozaki K., Ohme-Takagi M.;
"Efficient production of male and female sterile plants by expression
of a chimeric repressor in Arabidopsis and rice.";
Plant Biotechnol. J. 4:325-332(2006).
[8]
FUNCTION, SUBCELLULAR LOCATION, AND DEVELOPMENTAL STAGE.
PubMed=17329564; DOI=10.1105/tpc.106.046391;
Yang C., Xu Z., Song J., Conner K., Vizcay Barrena G., Wilson Z.A.;
"Arabidopsis MYB26/MALE STERILE35 regulates secondary thickening in
the endothecium and is essential for anther dehiscence.";
Plant Cell 19:534-548(2007).
[9]
INDUCTION.
PubMed=23410518; DOI=10.1111/tpj.12130;
Cecchetti V., Altamura M.M., Brunetti P., Petrocelli V., Falasca G.,
Ljung K., Costantino P., Cardarelli M.;
"Auxin controls Arabidopsis anther dehiscence by regulating
endothecium lignification and jasmonic acid biosynthesis.";
Plant J. 74:411-422(2013).
-!- FUNCTION: Probable transcription factor that regulates lignified
secondary cell wall thickening of the anther endocethium, which is
necessary for anther dehiscence (PubMed:12753590, PubMed:17147638,
PubMed:17329564). May play a role in specifying early endothecial
cell development by regulating a number of genes linked to
secondary thickening such as NST1 and NST2. Acts upstream of the
lignin biosynthesis pathway (PubMed:17329564).
{ECO:0000269|PubMed:12753590, ECO:0000269|PubMed:17147638,
ECO:0000269|PubMed:17329564}.
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:17329564}.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=2;
Name=1;
IsoId=Q9SPG3-1; Sequence=Displayed;
Name=2;
IsoId=Q9SPG3-2; Sequence=VSP_057673;
-!- TISSUE SPECIFICITY: Highly expressed in flowers.
{ECO:0000269|PubMed:12753590}.
-!- DEVELOPMENTAL STAGE: Expressed in anthers early during endothecial
development, with maximal expression during pollen mitosis I and
bicellular stages. {ECO:0000269|PubMed:17329564}.
-!- INDUCTION: Down-regulated by auxin. {ECO:0000269|PubMed:23410518}.
-!- DISRUPTION PHENOTYPE: Male sterility due to a defect in anther
dehiscence. Fertile pollen. {ECO:0000269|PubMed:12753590}.
-!- SEQUENCE CAUTION:
Sequence=ABK28557.1; Type=Erroneous termination; Positions=368; Note=Translated as stop.; Evidence={ECO:0000305};
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EMBL; AF175997; AAD53102.1; -; mRNA.
EMBL; AY519588; AAS10058.1; -; mRNA.
EMBL; AB019229; BAB02319.1; -; Genomic_DNA.
EMBL; CP002686; AEE75433.1; -; Genomic_DNA.
EMBL; CP002686; AEE75434.1; -; Genomic_DNA.
EMBL; DQ446661; ABE65939.1; -; mRNA.
EMBL; DQ653083; ABK28557.1; ALT_SEQ; mRNA.
RefSeq; NP_001078147.1; NM_001084678.2. [Q9SPG3-2]
RefSeq; NP_566467.2; NM_112243.3. [Q9SPG3-1]
UniGene; At.5633; -.
ProteinModelPortal; Q9SPG3; -.
SMR; Q9SPG3; -.
STRING; 3702.AT3G13890.1; -.
PaxDb; Q9SPG3; -.
EnsemblPlants; AT3G13890.1; AT3G13890.1; AT3G13890. [Q9SPG3-1]
EnsemblPlants; AT3G13890.2; AT3G13890.2; AT3G13890. [Q9SPG3-2]
GeneID; 820602; -.
Gramene; AT3G13890.1; AT3G13890.1; AT3G13890.
Gramene; AT3G13890.2; AT3G13890.2; AT3G13890.
KEGG; ath:AT3G13890; -.
Araport; AT3G13890; -.
TAIR; locus:2088187; AT3G13890.
eggNOG; KOG0048; Eukaryota.
eggNOG; COG5147; LUCA.
HOGENOM; HOG000153521; -.
InParanoid; Q9SPG3; -.
KO; K09422; -.
OMA; INSYGHG; -.
OrthoDB; EOG09360IVO; -.
PhylomeDB; Q9SPG3; -.
PRO; PR:Q9SPG3; -.
Proteomes; UP000006548; Chromosome 3.
Genevisible; Q9SPG3; AT.
GO; GO:0005634; C:nucleus; IDA:TAIR.
GO; GO:0000981; F:RNA polymerase II transcription factor activity, sequence-specific DNA binding; IBA:GO_Central.
GO; GO:0043565; F:sequence-specific DNA binding; IBA:GO_Central.
GO; GO:0001135; F:transcription factor activity, RNA polymerase II transcription factor recruiting; IBA:GO_Central.
GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:TAIR.
GO; GO:0044212; F:transcription regulatory region DNA binding; IBA:GO_Central.
GO; GO:0030154; P:cell differentiation; IBA:GO_Central.
GO; GO:0009834; P:plant-type secondary cell wall biogenesis; IMP:TAIR.
GO; GO:0006357; P:regulation of transcription from RNA polymerase II promoter; IBA:GO_Central.
GO; GO:0009739; P:response to gibberellin; IEP:TAIR.
GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW.
CDD; cd00167; SANT; 2.
InterPro; IPR009057; Homeobox-like.
InterPro; IPR017930; Myb_dom.
InterPro; IPR001005; SANT/Myb.
Pfam; PF00249; Myb_DNA-binding; 2.
SMART; SM00717; SANT; 2.
SUPFAM; SSF46689; SSF46689; 1.
PROSITE; PS51294; HTH_MYB; 2.
2: Evidence at transcript level;
Alternative splicing; Complete proteome; DNA-binding; Nucleus;
Reference proteome; Repeat; Transcription; Transcription regulation.
CHAIN 1 367 Transcription factor MYB26.
/FTId=PRO_0000433126.
DOMAIN 9 70 HTH myb-type 1. {ECO:0000255|PROSITE-
ProRule:PRU00625}.
DOMAIN 71 125 HTH myb-type 2. {ECO:0000255|PROSITE-
ProRule:PRU00625}.
DNA_BIND 37 70 H-T-H motif. {ECO:0000255|PROSITE-
ProRule:PRU00625}.
DNA_BIND 98 121 H-T-H motif. {ECO:0000255|PROSITE-
ProRule:PRU00625}.
COMPBIAS 128 137 His-rich. {ECO:0000255|PROSITE-
ProRule:PRU00009}.
COMPBIAS 352 357 Poly-Ser. {ECO:0000255}.
VAR_SEQ 46 54 Missing (in isoform 2).
/FTId=VSP_057673.
SEQUENCE 367 AA; 41576 MW; 4E6A1E7CC6424541 CRC64;
MGHHSCCNKQ KVKRGLWSPE EDEKLINYIN SYGHGCWSSV PKHAGTYTHI HGFCLQRCGK
SCRLRWINYL RPDLKRGSFS PQEAALIIEL HSILGNRWAQ IAKHLPGRTD NEVKNFWNSS
IKKKLMSHHH HGHHHHHLSS MASLLTNLPY HNGFNPTTVD DESSRFMSNI ITNTNPNFIT
PSHLSLPSPH VMTPLMFPTS REGDFKFLTT NNPNQSHHHD NNHYNNLDIL SPTPTINNHH
QPSLSSCPHD NNLQWPALPD FPASTISGFQ ETLQDYDDAN KLNVFVTPFN DNAKKLLCGE
VLEGKVLSSS SPISQDHGLF LPTTYNFQMT STSDHQHHHR VDSYINHMII PSSSSSSPIS
CGQYVIT


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