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Transcription factor MYB29 (Myb-related protein 29) (AtMYB29) (Protein HIGH ALIPHATIC GLUCOSINOLATE 3) (Protein PRODUCTION OF METHIONINE-DERIVED GLUCOSINOLATE 2)

 MYB29_ARATH             Reviewed;         336 AA.
Q9FLR1; O49765;
22-FEB-2012, integrated into UniProtKB/Swiss-Prot.
01-MAR-2001, sequence version 1.
22-NOV-2017, entry version 132.
RecName: Full=Transcription factor MYB29;
AltName: Full=Myb-related protein 29;
Short=AtMYB29;
AltName: Full=Protein HIGH ALIPHATIC GLUCOSINOLATE 3;
AltName: Full=Protein PRODUCTION OF METHIONINE-DERIVED GLUCOSINOLATE 2;
Name=MYB29; Synonyms=HAG3, PMG2; OrderedLocusNames=At5g07690;
ORFNames=MBK20.15;
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY, INDUCTION BY NITROGEN
STARVATION AND UV LIGHT, AND NOMENCLATURE.
STRAIN=cv. Columbia;
PubMed=9839469; DOI=10.1046/j.1365-313x.1998.00278.x;
Kranz H.D., Denekamp M., Greco R., Jin H.-L., Leyva A., Meissner R.C.,
Petroni K., Urzainqui A., Bevan M., Martin C., Smeekens S.,
Tonelli C., Paz-Ares J., Weisshaar B.;
"Towards functional characterisation of the members of the R2R3-MYB
gene family from Arabidopsis thaliana.";
Plant J. 16:263-276(1998).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=9628582; DOI=10.1093/dnares/5.1.41;
Sato S., Kaneko T., Kotani H., Nakamura Y., Asamizu E., Miyajima N.,
Tabata S.;
"Structural analysis of Arabidopsis thaliana chromosome 5. IV.
Sequence features of the regions of 1,456,315 bp covered by nineteen
physically assigned P1 and TAC clones.";
DNA Res. 5:41-54(1998).
[3]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
The Arabidopsis Information Portal (Araport);
Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
PubMed=14593172; DOI=10.1126/science.1088305;
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J.,
Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F.,
Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.,
Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J.,
Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y.,
Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P.,
Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F.,
Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M.,
Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J.,
Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T.,
Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y.,
Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis
genome.";
Science 302:842-846(2003).
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Qu L.-J., Gu H.;
"The MYB transcription factor family in Arabidopsis: a genome-wide
cloning and expression pattern analysis.";
Submitted (JAN-2004) to the EMBL/GenBank/DDBJ databases.
[6]
GENE FAMILY, AND NOMENCLATURE.
STRAIN=cv. Columbia;
PubMed=11597504; DOI=10.1016/S1369-5266(00)00199-0;
Stracke R., Werber M., Weisshaar B.;
"The R2R3-MYB gene family in Arabidopsis thaliana.";
Curr. Opin. Plant Biol. 4:447-456(2001).
[7]
GENE FAMILY, AND INDUCTION BY GA; JA AND SA.
PubMed=16463103; DOI=10.1007/s11103-005-2910-y;
Chen Y., Yang X., He K., Liu M., Li J., Gao Z., Lin Z., Zhang Y.,
Wang X., Qiu X., Shen Y., Zhang L., Deng X., Luo J., Deng X.-W.,
Chen Z., Gu H., Qu L.-J.;
"The MYB transcription factor superfamily of Arabidopsis: expression
analysis and phylogenetic comparison with the rice MYB family.";
Plant Mol. Biol. 60:107-124(2006).
[8]
FUNCTION IN GLUCOSINOLATES BIOSYNTHESIS.
PubMed=17420480; DOI=10.1073/pnas.0611629104;
Hirai M.Y., Sugiyama K., Sawada Y., Tohge T., Obayashi T., Suzuki A.,
Araki R., Sakurai N., Suzuki H., Aoki K., Goda H., Nishizawa O.I.,
Shibata D., Saito K.;
"Omics-based identification of Arabidopsis Myb transcription factors
regulating aliphatic glucosinolate biosynthesis.";
Proc. Natl. Acad. Sci. U.S.A. 104:6478-6483(2007).
[9]
FUNCTION IN GLUCOSINOLATES BIOSYNTHESIS, TISSUE SPECIFICITY,
DEVELOPMENTAL STAGE, AND INDUCTION BY WOUNDING; MEJA AND SA.
PubMed=18042203; DOI=10.1111/j.1469-8137.2007.02295.x;
Gigolashvili T., Engqvist M., Yatusevich R., Mueller C., Fluegge U.I.;
"HAG2/MYB76 and HAG3/MYB29 exert a specific and coordinated control on
the regulation of aliphatic glucosinolate biosynthesis in Arabidopsis
thaliana.";
New Phytol. 177:627-642(2008).
[10]
FUNCTION IN GLUCOSINOLATES BIOSYNTHESIS.
STRAIN=cv. Columbia;
PubMed=18446225; DOI=10.1371/journal.pone.0002068;
Beekwilder J., van Leeuwen W., van Dam N.M., Bertossi M., Grandi V.,
Mizzi L., Soloviev M., Szabados L., Molthoff J.W., Schipper B.,
Verbocht H., de Vos R.C.H., Morandini P., Aarts M.G.M., Bovy A.;
"The impact of the absence of aliphatic glucosinolates on insect
herbivory in Arabidopsis.";
PLoS ONE 3:E2068-E2068(2008).
[11]
FUNCTION.
STRAIN=cv. Columbia;
PubMed=20348214; DOI=10.1104/pp.109.149286;
Soenderby I.E., Burow M., Rowe H.C., Kliebenstein D.J., Halkier B.A.;
"A complex interplay of three R2R3 MYB transcription factors
determines the profile of aliphatic glucosinolates in Arabidopsis.";
Plant Physiol. 153:348-363(2010).
[12]
TISSUE SPECIFICITY.
STRAIN=cv. Columbia;
PubMed=23115560; DOI=10.3389/fpls.2012.00242;
Frerigmann H., Boettcher C., Baatout D., Gigolashvili T.;
"Glucosinolates are produced in trichomes of Arabidopsis thaliana.";
Front. Plant Sci. 3:242-242(2012).
[13]
FUNCTION, AND DISRUPTION PHENOTYPE.
PubMed=23580754; DOI=10.1093/jxb/ert094;
Guo R., Qian H., Shen W., Liu L., Zhang M., Cai C., Zhao Y., Qiao J.,
Wang Q.;
"BZR1 and BES1 participate in regulation of glucosinolate biosynthesis
by brassinosteroids in Arabidopsis.";
J. Exp. Bot. 64:2401-2412(2013).
[14]
FUNCTION, AND INDUCTION BY SULFUR.
PubMed=23792303; DOI=10.1093/pcp/pct085;
Li Y., Sawada Y., Hirai A., Sato M., Kuwahara A., Yan X., Hirai M.Y.;
"Novel insights into the function of Arabidopsis R2R3-MYB
transcription factors regulating aliphatic glucosinolate
biosynthesis.";
Plant Cell Physiol. 54:1335-1344(2013).
[15]
FUNCTION, AND INTERACTION WITH MYC2; MYC3 AND MYC4.
PubMed=23943862; DOI=10.1105/tpc.113.115139;
Schweizer F., Fernandez-Calvo P., Zander M., Diez-Diaz M., Fonseca S.,
Glauser G., Lewsey M.G., Ecker J.R., Solano R., Reymond P.;
"Arabidopsis basic helix-loop-helix transcription factors MYC2, MYC3,
and MYC4 regulate glucosinolate biosynthesis, insect performance, and
feeding behavior.";
Plant Cell 25:3117-3132(2013).
-!- FUNCTION: Plays a minor rheostat role in aliphatic glucosinolates
(GLSs) biosynthesis, mostly short chained. Together with
MYB28/HAG1 and MYB76/HAG2, promotes aliphatic glucosinolate
biosynthesis but represses indolic glucosinolate biosynthesis.
Prevents insect performance (e.g. lepidopteran insect Mamestra
brassicae) by promoting glucosinolates.
{ECO:0000269|PubMed:17420480, ECO:0000269|PubMed:18042203,
ECO:0000269|PubMed:18446225, ECO:0000269|PubMed:20348214,
ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23792303,
ECO:0000269|PubMed:23943862}.
-!- SUBUNIT: Can form complexes with MYC2, MYC3 or MYC4.
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-
ProRule:PRU00625}.
-!- TISSUE SPECIFICITY: Expressed in both vegetative and generative
organs. Mostly present in seedlings, inflorescences, roots and
stems, and, to a lower extent, in leaves (in midvein and
trichomes) and siliques. {ECO:0000269|PubMed:18042203,
ECO:0000269|PubMed:23115560, ECO:0000269|PubMed:9839469}.
-!- DEVELOPMENTAL STAGE: Primarily present around the midvein in
seedlings. Accumulates gradually in expanding leaves, reaching a
maximum in fully expanded leaves in the primary vein.
{ECO:0000269|PubMed:18042203}.
-!- INDUCTION: Slightly induced by gibberellic acid (GA), jasmonic
acid (JA, MeJA), nitrogen starvation and UV LIGHT treatment.
Transiently repressed by salicylic acid (SA). Accumulates upon
mechanical stimuli (e.g. wounding) in inflorescence. Down-
regulated by sulfur-deficient stress.
{ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18042203,
ECO:0000269|PubMed:23792303, ECO:0000269|PubMed:9839469}.
-!- DISRUPTION PHENOTYPE: Low levels of aliphatic glucosinolates.
{ECO:0000269|PubMed:23580754}.
-----------------------------------------------------------------------
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Distributed under the Creative Commons Attribution-NoDerivs License
-----------------------------------------------------------------------
EMBL; AF062872; AAC83594.1; -; mRNA.
EMBL; AB010070; BAB11448.1; -; Genomic_DNA.
EMBL; CP002688; AED91194.1; -; Genomic_DNA.
EMBL; AY035145; AAK59649.1; -; mRNA.
EMBL; AY059078; AAL15184.1; -; mRNA.
EMBL; AY519617; AAS10087.1; -; mRNA.
PIR; T51644; T51644.
RefSeq; NP_196386.1; NM_120851.2.
UniGene; At.9094; -.
ProteinModelPortal; Q9FLR1; -.
SMR; Q9FLR1; -.
BioGrid; 15941; 4.
IntAct; Q9FLR1; 1.
STRING; 3702.AT5G07690.1; -.
PaxDb; Q9FLR1; -.
EnsemblPlants; AT5G07690.1; AT5G07690.1; AT5G07690.
GeneID; 830662; -.
Gramene; AT5G07690.1; AT5G07690.1; AT5G07690.
KEGG; ath:AT5G07690; -.
Araport; AT5G07690; -.
TAIR; locus:2160339; AT5G07690.
eggNOG; KOG0048; Eukaryota.
eggNOG; COG5147; LUCA.
HOGENOM; HOG000237600; -.
InParanoid; Q9FLR1; -.
KO; K09422; -.
OMA; HMKEDIS; -.
OrthoDB; EOG09360K27; -.
PhylomeDB; Q9FLR1; -.
PRO; PR:Q9FLR1; -.
Proteomes; UP000006548; Chromosome 5.
Genevisible; Q9FLR1; AT.
GO; GO:0005634; C:nucleus; IBA:GO_Central.
GO; GO:0000981; F:RNA polymerase II transcription factor activity, sequence-specific DNA binding; IBA:GO_Central.
GO; GO:0043565; F:sequence-specific DNA binding; IPI:TAIR.
GO; GO:0001135; F:transcription factor activity, RNA polymerase II transcription factor recruiting; IBA:GO_Central.
GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IDA:TAIR.
GO; GO:0044212; F:transcription regulatory region DNA binding; IBA:GO_Central.
GO; GO:0030154; P:cell differentiation; IBA:GO_Central.
GO; GO:0010438; P:cellular response to sulfur starvation; TAS:TAIR.
GO; GO:0050832; P:defense response to fungus; IGI:TAIR.
GO; GO:0009819; P:drought recovery; IMP:TAIR.
GO; GO:0009755; P:hormone-mediated signaling pathway; IMP:TAIR.
GO; GO:0009682; P:induced systemic resistance; IMP:TAIR.
GO; GO:0009867; P:jasmonic acid mediated signaling pathway; IMP:TAIR.
GO; GO:0031930; P:mitochondria-nucleus signaling pathway; IMP:TAIR.
GO; GO:0010105; P:negative regulation of ethylene-activated signaling pathway; IMP:TAIR.
GO; GO:0010439; P:regulation of glucosinolate biosynthetic process; IMP:TAIR.
GO; GO:2000070; P:regulation of response to water deprivation; IDA:TAIR.
GO; GO:1905255; P:regulation of RNA binding transcription factor activity; IMP:TAIR.
GO; GO:0006357; P:regulation of transcription from RNA polymerase II promoter; IBA:GO_Central.
GO; GO:0006355; P:regulation of transcription, DNA-templated; IEP:TAIR.
GO; GO:0009617; P:response to bacterium; IMP:TAIR.
GO; GO:0009739; P:response to gibberellin; IEP:TAIR.
GO; GO:0009644; P:response to high light intensity; IDA:TAIR.
GO; GO:0009625; P:response to insect; IEP:TAIR.
GO; GO:0009753; P:response to jasmonic acid; IEP:TAIR.
GO; GO:0009751; P:response to salicylic acid; IEP:TAIR.
GO; GO:0009414; P:response to water deprivation; IEP:TAIR.
GO; GO:0009611; P:response to wounding; IEP:UniProtKB.
GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW.
CDD; cd00167; SANT; 2.
InterPro; IPR009057; Homeobox-like_sf.
InterPro; IPR017930; Myb_dom.
InterPro; IPR001005; SANT/Myb.
Pfam; PF00249; Myb_DNA-binding; 2.
SMART; SM00717; SANT; 2.
SUPFAM; SSF46689; SSF46689; 1.
PROSITE; PS51294; HTH_MYB; 2.
1: Evidence at protein level;
Complete proteome; DNA-binding; Nucleus; Reference proteome; Repeat;
Transcription; Transcription regulation.
CHAIN 1 336 Transcription factor MYB29.
/FTId=PRO_0000415437.
DOMAIN 9 65 HTH myb-type 1. {ECO:0000255|PROSITE-
ProRule:PRU00625}.
DOMAIN 66 116 HTH myb-type 2. {ECO:0000255|PROSITE-
ProRule:PRU00625}.
DNA_BIND 37 61 H-T-H motif. {ECO:0000255|PROSITE-
ProRule:PRU00625}.
DNA_BIND 89 112 H-T-H motif. {ECO:0000255|PROSITE-
ProRule:PRU00625}.
COMPBIAS 139 220 Ser-rich.
CONFLICT 34 34 E -> G (in Ref. 1; AAC83594).
{ECO:0000305}.
CONFLICT 263 263 D -> N (in Ref. 1; AAC83594).
{ECO:0000305}.
SEQUENCE 336 AA; 37966 MW; AE5DAC67FF961C0B CRC64;
MSRKPCCVGE GLKKGAWTAE EDKKLISYIH EHGEGGWRDI PQKAGLKRCG KSCRLRWANY
LKPDIKRGEF SYEEEQIIIM LHASRGNKWS VIARHLPKRT DNEIKNYWNT HLKKLLIDKG
IDPVTHKPLA YDSNPDEQSQ SGSISPKSLP PSSSKNVPEI TSSDETPKYD ASLSSKKRCF
KRSSSTSKLL NKVAARASSM GTILGASIEG TLISSTPLSS CLNDDFSETS QFQMEEFDPF
YQSSEHIIDH MKEDISINNS EYDFSQFLEQ FSNNEGEEAD NTGGGYNQDL LMSDVSSTSV
DEDEMMQNIT GWSNYLLDHS DFNYDTSQDY DDKNFI


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