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Transcription factor MYB3R-1 (Myb-related protein 3R-1) (Plant c-MYB-like protein 1) (Protein PC-MYB1)

 MB3R1_ARATH             Reviewed;         776 AA.
Q9S7G7; O65528; Q9LDX5;
16-MAY-2006, integrated into UniProtKB/Swiss-Prot.
01-MAY-2000, sequence version 1.
23-MAY-2018, entry version 121.
RecName: Full=Transcription factor MYB3R-1 {ECO:0000303|PubMed:11597504};
AltName: Full=Myb-related protein 3R-1 {ECO:0000303|PubMed:11597504};
AltName: Full=Plant c-MYB-like protein 1 {ECO:0000303|PubMed:10482656};
Short=Protein PC-MYB1 {ECO:0000303|PubMed:10482656};
Name=MYB3R1 {ECO:0000303|PubMed:11597504};
Synonyms=PC-MYB1 {ECO:0000303|PubMed:10482656};
OrderedLocusNames=At4g32730 {ECO:0000312|Araport:AT4G32730};
ORFNames=F4D11.70 {ECO:0000312|EMBL:CAA18588.1};
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [MRNA].
STRAIN=cv. Columbia;
PubMed=10482656; DOI=10.1104/pp.121.1.21;
Braun E.L., Grotewold E.;
"Newly discovered plant c-myb-like genes rewrite the evolution of the
plant myb gene family.";
Plant Physiol. 121:21-24(1999).
[2]
NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA], TISSUE SPECIFICITY, AND
VARIANTS.
STRAIN=cv. Columbia, and cv. Landsberg erecta;
PubMed=10743663; DOI=10.1046/j.1365-313x.2000.00666.x;
Kranz H., Scholz K., Weisshaar B.;
"c-MYB oncogene-like genes encoding three MYB repeats occur in all
major plant lineages.";
Plant J. 21:231-235(2000).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=10617198; DOI=10.1038/47134;
Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G.,
Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N.,
Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M.,
Weichselgartner M., de Simone V., Obermaier B., Mache R., Mueller M.,
Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T.,
Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I.,
Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P.,
Langham S.-A., McCullagh B., Bilham L., Robben J.,
van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F.,
Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E.,
Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W.,
Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P.,
Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H.,
De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R.,
van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S.,
Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R.,
Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S.,
Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H.,
Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S.,
Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A.,
Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R.,
Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S.,
Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E.,
Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A.,
Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T.,
Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C.,
Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S.,
Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K.,
Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L.,
Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J.,
Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J.,
Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D.,
Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D.,
Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C.,
Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C.,
Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R.,
Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S.,
Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A.,
Chen E., Marra M.A., Martienssen R., McCombie W.R.;
"Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana.";
Nature 402:769-777(1999).
[4]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
PubMed=27862469; DOI=10.1111/tpj.13415;
Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
Town C.D.;
"Araport11: a complete reannotation of the Arabidopsis thaliana
reference genome.";
Plant J. 89:789-804(2017).
[5]
GENE FAMILY, AND NOMENCLATURE.
PubMed=11597504; DOI=10.1016/S1369-5266(00)00199-0;
Stracke R., Werber M., Weisshaar B.;
"The R2R3-MYB gene family in Arabidopsis thaliana.";
Curr. Opin. Plant Biol. 4:447-456(2001).
[6]
DISRUPTION PHENOTYPE, INDUCTION, TISSUE SPECIFICITY, DEVELOPMENTAL
STAGE, AND GENE FAMILY.
STRAIN=cv. Columbia;
PubMed=17287251; DOI=10.1242/dev.02801;
Haga N., Kato K., Murase M., Araki S., Kubo M., Demura T., Suzuki K.,
Mueller I., Voss U., Juergens G., Ito M.;
"R1R2R3-Myb proteins positively regulate cytokinesis through
activation of KNOLLE transcription in Arabidopsis thaliana.";
Development 134:1101-1110(2007).
[7]
FUNCTION, AND DISRUPTION PHENOTYPE.
STRAIN=cv. Columbia;
PubMed=21862669; DOI=10.1104/pp.111.180836;
Haga N., Kobayashi K., Suzuki T., Maeo K., Kubo M., Ohtani M.,
Mitsuda N., Demura T., Nakamura K., Juergens G., Ito M.;
"Mutations in MYB3R1 and MYB3R4 cause pleiotropic developmental
defects and preferential down-regulation of multiple G2/M-specific
genes in Arabidopsis.";
Plant Physiol. 157:706-717(2011).
[8]
FUNCTION, DISRUPTION PHENOTYPE, AND DEVELOPMENTAL STAGE.
STRAIN=cv. Columbia;
PubMed=26069325; DOI=10.15252/embj.201490899;
Kobayashi K., Suzuki T., Iwata E., Nakamichi N., Suzuki T., Chen P.,
Ohtani M., Ishida T., Hosoya H., Mueller S., Leviczky T.,
Pettko-Szandtner A., Darula Z., Iwamoto A., Nomoto M., Tada Y.,
Higashiyama T., Demura T., Doonan J.H., Hauser M.T., Sugimoto K.,
Umeda M., Magyar Z., Boegre L., Ito M.;
"Transcriptional repression by MYB3R proteins regulates plant organ
growth.";
EMBO J. 34:1992-2007(2015).
-!- FUNCTION: Transcription factor that binds 5'-AACGG-3' motifs in
gene promoters (PubMed:21862669). Transcription activator involved
in the regulation of cytokinesis, probably via the activation of
several G2/M phase-specific genes transcription (e.g. KNOLLE)
(PubMed:17287251, PubMed:21862669). Transcription repressor that
regulates organ growth. Binds to the promoters of G2/M-specific
genes and to E2F target genes to prevent their expression in post-
mitotic cells and to restrict the time window of their expression
in proliferating cells (PubMed:26069325). Required for the
maintenance of diploidy (PubMed:21862669).
{ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669,
ECO:0000269|PubMed:26069325}.
-!- SUBUNIT: Component of a DREAM-like complex which modulates a
variety of developmentally regulated genes and of the mitotic
genes in proliferating and differentiated cells.
{ECO:0000250|UniProtKB:Q8H1P9}.
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-
ProRule:PRU00625, ECO:0000255|PROSITE-ProRule:PRU00768}.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=1;
Comment=A number of isoforms are produced. According to EST
sequences. {ECO:0000305};
Name=1;
IsoId=Q9S7G7-1; Sequence=Displayed;
-!- TISSUE SPECIFICITY: Expressed ubiquitously at low levels
(PubMed:10743663). Expressed in roots, cotyledons, flowers and
leaves, especially in vascular tissues (PubMed:17287251).
{ECO:0000269|PubMed:10743663, ECO:0000269|PubMed:17287251}.
-!- DEVELOPMENTAL STAGE: Accumulates in the columella root cap. Also
present in floral organs in young flower buds. Strongly expressed
in vascular tissues of filaments and anthers. Weakly and uniformly
present in the developing embryo and maternal tissues
(PubMed:17287251). Expressed both in proliferating and maturing
stages of leaves (PubMed:26069325). {ECO:0000269|PubMed:17287251,
ECO:0000269|PubMed:26069325}.
-!- INDUCTION: Constant levels during cell cycle. Activated by CYCB1.
{ECO:0000269|PubMed:17287251}.
-!- DISRUPTION PHENOTYPE: The double mutant myb3r1 myb3r4 often fails
to complete cytokinesis, resulting in multinucleate cells with
gapped walls and cell wall stubs in diverse tissues (e.g. in
embryo during the first or second division after fertilization, in
stomata guard mother cell) and several pleiotropic developmental
defects, and associated with the selective reduction of several
G2/M phase-specific genes transcript levels (e.g. CYCB2, CDC20.1
and KNOLLE). Hypersensitivity to caffeine, an inhibitor of
cytokinesis (PubMed:17287251, PubMed:21862669). In triple mutant
myb3r1 myb3r3 myb3r5, up-regulation of many G2/M-specific genes
leading to larger seeds, organs and embryos due to
overproliferation and ectopic cell divisions (PubMed:26069325).
{ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669,
ECO:0000269|PubMed:26069325}.
-!- SEQUENCE CAUTION:
Sequence=CAA18588.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
-----------------------------------------------------------------------
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-----------------------------------------------------------------------
EMBL; AF151646; AAD46772.1; -; mRNA.
EMBL; AF176005; AAD53110.2; -; mRNA.
EMBL; AF188677; AAF77637.1; -; Genomic_DNA.
EMBL; AF189212; AAF77638.1; -; Genomic_DNA.
EMBL; AF189784; AAF78886.1; -; mRNA.
EMBL; AL022537; CAA18588.1; ALT_SEQ; Genomic_DNA.
EMBL; AL161582; CAB79990.1; -; Genomic_DNA.
EMBL; CP002687; AEE86111.1; -; Genomic_DNA.
PIR; E85384; E85384.
PIR; T04452; T04452.
RefSeq; NP_194999.1; NM_119426.2. [Q9S7G7-1]
UniGene; At.2235; -.
ProteinModelPortal; Q9S7G7; -.
SMR; Q9S7G7; -.
STRING; 3702.AT4G32730.2; -.
iPTMnet; Q9S7G7; -.
PaxDb; Q9S7G7; -.
PRIDE; Q9S7G7; -.
EnsemblPlants; AT4G32730.1; AT4G32730.1; AT4G32730. [Q9S7G7-1]
GeneID; 829409; -.
Gramene; AT4G32730.1; AT4G32730.1; AT4G32730. [Q9S7G7-1]
KEGG; ath:AT4G32730; -.
Araport; AT4G32730; -.
eggNOG; KOG0048; Eukaryota.
eggNOG; COG5147; LUCA.
HOGENOM; HOG000244033; -.
InParanoid; Q9S7G7; -.
PhylomeDB; Q9S7G7; -.
PRO; PR:Q9S7G7; -.
Proteomes; UP000006548; Chromosome 4.
ExpressionAtlas; Q9S7G7; baseline and differential.
Genevisible; Q9S7G7; AT.
GO; GO:0005634; C:nucleus; IBA:GO_Central.
GO; GO:0000981; F:RNA polymerase II transcription factor activity, sequence-specific DNA binding; IBA:GO_Central.
GO; GO:0043565; F:sequence-specific DNA binding; IDA:UniProtKB.
GO; GO:0001135; F:transcription factor activity, RNA polymerase II transcription factor recruiting; IBA:GO_Central.
GO; GO:0044212; F:transcription regulatory region DNA binding; IBA:GO_Central.
GO; GO:0030154; P:cell differentiation; IBA:GO_Central.
GO; GO:0008285; P:negative regulation of cell proliferation; IMP:UniProtKB.
GO; GO:1901181; P:negative regulation of cellular response to caffeine; IMP:UniProtKB.
GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IMP:UniProtKB.
GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IMP:UniProtKB.
GO; GO:0032465; P:regulation of cytokinesis; IGI:UniProtKB.
GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW.
CDD; cd00167; SANT; 3.
InterPro; IPR009057; Homeobox-like_sf.
InterPro; IPR017930; Myb_dom.
InterPro; IPR001005; SANT/Myb.
Pfam; PF00249; Myb_DNA-binding; 3.
SMART; SM00717; SANT; 3.
SUPFAM; SSF46689; SSF46689; 2.
PROSITE; PS51294; HTH_MYB; 3.
2: Evidence at transcript level;
Activator; Alternative splicing; Complete proteome; DNA-binding;
Nucleus; Reference proteome; Repeat; Repressor; Transcription;
Transcription regulation.
CHAIN 1 776 Transcription factor MYB3R-1.
/FTId=PRO_0000234361.
DOMAIN 30 81 HTH myb-type 1. {ECO:0000255|PROSITE-
ProRule:PRU00625}.
DOMAIN 82 137 HTH myb-type 2. {ECO:0000255|PROSITE-
ProRule:PRU00625}.
DOMAIN 138 188 HTH myb-type 3. {ECO:0000255|PROSITE-
ProRule:PRU00625}.
DNA_BIND 58 81 H-T-H motif. {ECO:0000255|PROSITE-
ProRule:PRU00625}.
DNA_BIND 110 133 H-T-H motif. {ECO:0000255|PROSITE-
ProRule:PRU00625}.
DNA_BIND 161 184 H-T-H motif. {ECO:0000255|PROSITE-
ProRule:PRU00625}.
MOTIF 648 655 Nuclear localization signal.
{ECO:0000255|PROSITE-ProRule:PRU00768}.
VARIANT 87 87 K -> R (in strain: cv. Landsberg erecta).
VARIANT 223 223 N -> S (in strain: cv. Landsberg erecta).
VARIANT 353 353 N -> S (in strain: cv. Landsberg erecta).
VARIANT 586 586 D -> N (in strain: cv. Landsberg erecta).
VARIANT 607 607 M -> V (in strain: cv. Landsberg erecta).
SEQUENCE 776 AA; 86506 MW; 9502A6A0A68FA884 CRC64;
MKREMKAPTT PLESLQGDLK GKQGRTSGPA RRSTKGQWTP EEDEVLCKAV ERFQGKNWKK
IAECFKDRTD VQCLHRWQKV LNPELVKGPW SKEEDNTIID LVEKYGPKKW STISQHLPGR
IGKQCRERWH NHLNPGINKN AWTQEEELTL IRAHQIYGNK WAELMKFLPG RSDNSIKNHW
NSSVKKKLDS YYASGLLDQC QSSPLIALQN KSIASSSSWM HSNGDEGSSR PGVDAEESEC
SQASTVFSQS TNDLQDEVQR GNEEYYMPEF HSGTEQQISN AASHAEPYYP SFKDVKIVVP
EISCETECSK KFQNLNCSHE LRTTTATEDQ LPGVSNDAKQ DRGLELLTHN MDNGGKNQAL
QQDFQSSVRL SDQPFLSNSD TDPEAQTLIT DEECCRVLFP DNMKDSSTSS GEQGRNMVDP
QNGKGSLCSQ AAETHAHETG KVPALPWHPS SSEGLAGHNC VPLLDSDLKD SLLPRNDSNA
PIQGCRLFGA TELECKTDTN DGFIDTYGHV TSHGNDDNGG FPEQQGLSYI PKDSLKLVPL
NSFSSPSRVN KIYFPIDDKP AEKDKGALCY EPPRFPSADI PFFSCDLVPS NSDLRQEYSP
FGIRQLMISS MNCTTPLRLW DSPCHDRSPD VMLNDTAKSF SGAPSILKKR HRDLLSPVLD
RRKDKKLKRA ATSSLANDFS RLDVMLDEGD DCMTSRPSES PEDKNICASP SIARDNRNCA
SARLYQEMIP IDEEPKETLE SGGVTSMQNE NGCNDGGASA KNVSPSLSLH IIWYQL


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