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Transcription factor MYB46 (Myb-related protein 46) (AtMYB46)

 MYB46_ARATH             Reviewed;         280 AA.
Q9LXV2; Q9ZTE1;
18-MAR-2008, integrated into UniProtKB/Swiss-Prot.
01-OCT-2000, sequence version 1.
25-APR-2018, entry version 135.
RecName: Full=Transcription factor MYB46 {ECO:0000303|PubMed:11597504};
AltName: Full=Myb-related protein 46 {ECO:0000303|PubMed:11597504};
Short=AtMYB46 {ECO:0000303|PubMed:11597504};
Name=MYB46 {ECO:0000303|PubMed:11597504}; OrderedLocusNames=At5g12870;
ORFNames=T24H18.40;
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [MRNA].
Qu L., Gu H.;
"The MYB transcription factor family in Arabidopsis: a genome-wide
cloning and expression pattern analysis.";
Submitted (JAN-2004) to the EMBL/GenBank/DDBJ databases.
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=11130714; DOI=10.1038/35048507;
Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K.,
Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S.,
Nakazaki N., Naruo K., Okumura S., Shinpo S., Takeuchi C., Wada T.,
Watanabe A., Yamada M., Yasuda M., Sato S., de la Bastide M.,
Huang E., Spiegel L., Gnoj L., O'Shaughnessy A., Preston R.,
Habermann K., Murray J., Johnson D., Rohlfing T., Nelson J.,
Stoneking T., Pepin K., Spieth J., Sekhon M., Armstrong J., Becker M.,
Belter E., Cordum H., Cordes M., Courtney L., Courtney W., Dante M.,
Du H., Edwards J., Fryman J., Haakensen B., Lamar E., Latreille P.,
Leonard S., Meyer R., Mulvaney E., Ozersky P., Riley A., Strowmatt C.,
Wagner-McPherson C., Wollam A., Yoakum M., Bell M., Dedhia N.,
Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D., Baker J.,
Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S.,
Langham S.-A., McCullagh B., Robben J., Grymonprez B., Zimmermann W.,
Ramsperger U., Wedler H., Balke K., Wedler E., Peters S.,
van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R.,
Weitzenegger T., Bothe G., Rose M., Hauf J., Berneiser S., Hempel S.,
Feldpausch M., Lamberth S., Villarroel R., Gielen J., Ardiles W.,
Bents O., Lemcke K., Kolesov G., Mayer K.F.X., Rudd S., Schoof H.,
Schueller C., Zaccaria P., Mewes H.-W., Bevan M., Fransz P.F.;
"Sequence and analysis of chromosome 5 of the plant Arabidopsis
thaliana.";
Nature 408:823-826(2000).
[3]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
PubMed=27862469; DOI=10.1111/tpj.13415;
Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
Town C.D.;
"Araport11: a complete reannotation of the Arabidopsis thaliana
reference genome.";
Plant J. 89:789-804(2017).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
PubMed=14593172; DOI=10.1126/science.1088305;
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J.,
Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F.,
Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.,
Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J.,
Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y.,
Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P.,
Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F.,
Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M.,
Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J.,
Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T.,
Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y.,
Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis
genome.";
Science 302:842-846(2003).
[5]
NUCLEOTIDE SEQUENCE [MRNA] OF 75-280, AND TISSUE SPECIFICITY.
STRAIN=cv. Columbia;
PubMed=9839469; DOI=10.1046/j.1365-313x.1998.00278.x;
Kranz H.D., Denekamp M., Greco R., Jin H.-L., Leyva A., Meissner R.C.,
Petroni K., Urzainqui A., Bevan M., Martin C., Smeekens S.,
Tonelli C., Paz-Ares J., Weisshaar B.;
"Towards functional characterisation of the members of the R2R3-MYB
gene family from Arabidopsis thaliana.";
Plant J. 16:263-276(1998).
[6]
GENE FAMILY, AND NOMENCLATURE.
PubMed=11597504; DOI=10.1016/S1369-5266(00)00199-0;
Stracke R., Werber M., Weisshaar B.;
"The R2R3-MYB gene family in Arabidopsis thaliana.";
Curr. Opin. Plant Biol. 4:447-456(2001).
[7]
SUBCELLULAR LOCATION, AND TISSUE SPECIFICITY.
PubMed=16581911; DOI=10.1073/pnas.0510607103;
Lee J.-Y., Colinas J., Wang J.Y., Mace D., Ohler U., Benfey P.N.;
"Transcriptional and posttranscriptional regulation of transcription
factor expression in Arabidopsis roots.";
Proc. Natl. Acad. Sci. U.S.A. 103:6055-6060(2006).
[8]
INDUCTION BY SA, AND GENE FAMILY.
PubMed=16463103; DOI=10.1007/s11103-005-2910-y;
Chen Y., Yang X., He K., Liu M., Li J., Gao Z., Lin Z., Zhang Y.,
Wang X., Qiu X., Shen Y., Zhang L., Deng X., Luo J., Deng X.-W.,
Chen Z., Gu H., Qu L.-J.;
"The MYB transcription factor superfamily of Arabidopsis: expression
analysis and phylogenetic comparison with the rice MYB family.";
Plant Mol. Biol. 60:107-124(2006).
[9]
FUNCTION, INDUCTION BY SND1, SUBCELLULAR LOCATION, AND TISSUE
SPECIFICITY.
PubMed=17890373; DOI=10.1105/tpc.107.053678;
Zhong R., Richardson E.A., Ye Z.-H.;
"The MYB46 transcription factor is a direct target of SND1 and
regulates secondary wall biosynthesis in Arabidopsis.";
Plant Cell 19:2776-2792(2007).
[10]
FUNCTION, AND DISRUPTION PHENOTYPE.
PubMed=19808805; DOI=10.1093/pcp/pcp139;
McCarthy R.L., Zhong R., Ye Z.-H.;
"MYB83 is a direct target of SND1 and acts redundantly with MYB46 in
the regulation of secondary cell wall biosynthesis in Arabidopsis.";
Plant Cell Physiol. 50:1950-1964(2009).
[11]
FUNCTION.
PubMed=22197883; DOI=10.1093/pcp/pcr185;
Zhong R., Ye Z.H.;
"MYB46 and MYB83 bind to the SMRE sites and directly activate a suite
of transcription factors and secondary wall biosynthetic genes.";
Plant Cell Physiol. 53:368-380(2012).
[12]
FUNCTION.
PubMed=23726771; DOI=10.1016/j.jplph.2013.04.012;
Kim W.C., Kim J.Y., Ko J.H., Kim J., Han K.H.;
"Transcription factor MYB46 is an obligate component of the
transcriptional regulatory complex for functional expression of
secondary wall-associated cellulose synthases in Arabidopsis
thaliana.";
J. Plant Physiol. 170:1374-1378(2013).
[13]
FUNCTION.
PubMed=24243147; DOI=10.1007/s11103-013-0154-9;
Kim W.C., Reca I.B., Kim Y., Park S., Thomashow M.F., Keegstra K.,
Han K.H.;
"Transcription factors that directly regulate the expression of CSLA9
encoding mannan synthase in Arabidopsis thaliana.";
Plant Mol. Biol. 84:577-587(2014).
-!- FUNCTION: Transcription activator. Involved in the regulation of
secondary wall biosynthesis in fibers and vessels
(PubMed:17890373). Transcription activator of the mannan synthase
CSLA9 that recognizes and binds to the DNA consensus sequence 5'-
[AG][GT]T[AT]GGT[GA]-3' cis-regulatory element of CSLA9 promoter
(PubMed:24243147). Transcription factor that acts as molecular
switch in the NAC012/SND1-mediated transcriptional network
regulating secondary wall biosynthesis. Is directly activated by
NAC012/SND1. Functions redundantly with MYB83 in the
transcriptional regulatory cascade leading to secondary wall
formation in fibers and vessels (PubMed:19808805). Transcription
activator that binds to the DNA consensus sequence 5'-
ACC[AT]A[AC][TC]-3', designated as the secondary wall MYB-
responsive element (SMRE). Regulates directly numerous
transcription factors and a number of genes involved in secondary
wall biosynthesis that contain SMRE elements in their promoters
(PubMed:22197883). Is an obligate component of the transcriptional
regulatory complex toward the commitment of secondary wall
cellulose synthesis. Is required for functional expression of the
three secondary wall CESA genes, CESA4, CESA7 and CESA8
(PubMed:23726771). {ECO:0000269|PubMed:17890373,
ECO:0000269|PubMed:19808805, ECO:0000269|PubMed:22197883,
ECO:0000269|PubMed:23726771, ECO:0000269|PubMed:24243147}.
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-
ProRule:PRU00625, ECO:0000269|PubMed:16581911,
ECO:0000269|PubMed:17890373}.
-!- TISSUE SPECIFICITY: Expressed at low levels in stems and siliques,
specifically in xylem. {ECO:0000269|PubMed:16581911,
ECO:0000269|PubMed:17890373, ECO:0000269|PubMed:9839469}.
-!- INDUCTION: Slightly induced by salicylic acid (SA). Positively
regulated by SND1 and homolog proteins.
{ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:17890373}.
-!- DISRUPTION PHENOTYPE: No visible phenotype under normal growth
conditions, but the double mutant plants myb48 and myb83 nearly
lack secondary wall thickening, stop growing after developing one
to two pairs of small leaves and subsequently die.
{ECO:0000269|PubMed:19808805}.
-!- MISCELLANEOUS: Plants over-expressing MYB46 show a significant
increase in mannan synthase activity and mannan content in plant.
{ECO:0000269|PubMed:24243147}.
-----------------------------------------------------------------------
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Distributed under the Creative Commons Attribution (CC BY 4.0) License
-----------------------------------------------------------------------
EMBL; AY519621; AAS10091.1; -; mRNA.
EMBL; AL353013; CAB88251.1; -; Genomic_DNA.
EMBL; CP002688; AED91824.1; -; Genomic_DNA.
EMBL; BT000455; AAN17432.1; -; mRNA.
EMBL; BT002549; AAO00909.1; -; mRNA.
EMBL; AF062884; AAC83606.1; -; mRNA.
PIR; T49901; T49901.
PIR; T51656; T51656.
RefSeq; NP_196791.1; NM_121290.3.
UniGene; At.5283; -.
ProteinModelPortal; Q9LXV2; -.
SMR; Q9LXV2; -.
BioGrid; 16405; 2.
IntAct; Q9LXV2; 1.
STRING; 3702.AT5G12870.1; -.
PaxDb; Q9LXV2; -.
EnsemblPlants; AT5G12870.1; AT5G12870.1; AT5G12870.
GeneID; 831127; -.
Gramene; AT5G12870.1; AT5G12870.1; AT5G12870.
KEGG; ath:AT5G12870; -.
Araport; AT5G12870; -.
TAIR; locus:2182275; AT5G12870.
eggNOG; KOG0048; Eukaryota.
eggNOG; COG5147; LUCA.
HOGENOM; HOG000237600; -.
InParanoid; Q9LXV2; -.
KO; K09422; -.
OMA; PCNDDFT; -.
OrthoDB; EOG09360J4W; -.
PhylomeDB; Q9LXV2; -.
PRO; PR:Q9LXV2; -.
Proteomes; UP000006548; Chromosome 5.
ExpressionAtlas; Q9LXV2; baseline and differential.
Genevisible; Q9LXV2; AT.
GO; GO:0005634; C:nucleus; IDA:TAIR.
GO; GO:0003700; F:DNA binding transcription factor activity; IDA:TAIR.
GO; GO:0000981; F:RNA polymerase II transcription factor activity, sequence-specific DNA binding; IBA:GO_Central.
GO; GO:0043565; F:sequence-specific DNA binding; IPI:TAIR.
GO; GO:0001135; F:transcription factor activity, RNA polymerase II transcription factor recruiting; IBA:GO_Central.
GO; GO:0044212; F:transcription regulatory region DNA binding; IBA:GO_Central.
GO; GO:0030154; P:cell differentiation; IBA:GO_Central.
GO; GO:0050832; P:defense response to fungus; IMP:TAIR.
GO; GO:0009834; P:plant-type secondary cell wall biogenesis; IMP:TAIR.
GO; GO:1901348; P:positive regulation of secondary cell wall biogenesis; IMP:TAIR.
GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IDA:TAIR.
GO; GO:2000652; P:regulation of secondary cell wall biogenesis; IMP:TAIR.
GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
GO; GO:0009751; P:response to salicylic acid; IEP:TAIR.
GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW.
CDD; cd00167; SANT; 2.
InterPro; IPR009057; Homeobox-like_sf.
InterPro; IPR017930; Myb_dom.
InterPro; IPR001005; SANT/Myb.
Pfam; PF00249; Myb_DNA-binding; 2.
SMART; SM00717; SANT; 2.
SUPFAM; SSF46689; SSF46689; 1.
PROSITE; PS51294; HTH_MYB; 2.
2: Evidence at transcript level;
Activator; Complete proteome; DNA-binding; Nucleus;
Reference proteome; Repeat; Transcription; Transcription regulation.
CHAIN 1 280 Transcription factor MYB46.
/FTId=PRO_0000323610.
DOMAIN 15 67 HTH myb-type 1. {ECO:0000255|PROSITE-
ProRule:PRU00625}.
DOMAIN 68 122 HTH myb-type 2. {ECO:0000255|PROSITE-
ProRule:PRU00625}.
DNA_BIND 43 67 H-T-H motif. {ECO:0000255|PROSITE-
ProRule:PRU00625}.
DNA_BIND 95 118 H-T-H motif. {ECO:0000255|PROSITE-
ProRule:PRU00625}.
SEQUENCE 280 AA; 31541 MW; 0DE9FC2F4ED7FC92 CRC64;
MRKPEVAIAA STHQVKKMKK GLWSPEEDSK LMQYMLSNGQ GCWSDVAKNA GLQRCGKSCR
LRWINYLRPD LKRGAFSPQE EDLIIRFHSI LGNRWSQIAA RLPGRTDNEI KNFWNSTIKK
RLKKMSDTSN LINNSSSSPN TASDSSSNSA SSLDIKDIIG SFMSLQEQGF VNPSLTHIQT
NNPFPTGNMI SHPCNDDFTP YVDGIYGVNA GVQGELYFPP LECEEGDWYN ANINNHLDEL
NTNGSGNAPE GMRPVEEFWD LDQLMNTEVP SFYFNFKQSI


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