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Transcription factor MYB61 (Myb-related protein 61) (AtMYB61)

 MYB61_ARATH             Reviewed;         366 AA.
Q8VZQ2; Q9SAV9; Q9SBF9;
12-APR-2017, integrated into UniProtKB/Swiss-Prot.
01-MAR-2002, sequence version 1.
22-NOV-2017, entry version 138.
RecName: Full=Transcription factor MYB61 {ECO:0000305};
AltName: Full=Myb-related protein 61 {ECO:0000305};
Short=AtMYB61 {ECO:0000303|PubMed:16005292};
Name=MYB61 {ECO:0000303|PubMed:9839469};
OrderedLocusNames=At1g09540 {ECO:0000312|Araport:AT1G09540};
ORFNames=F14J9.20 {ECO:0000312|EMBL:AAC33214.1};
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [MRNA].
Qu L., Gu H.;
"The MYB transcription factor family in Arabidopsis: a genome-wide
cloning and expression pattern analysis.";
Submitted (JAN-2004) to the EMBL/GenBank/DDBJ databases.
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=11130712; DOI=10.1038/35048500;
Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S.,
White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y.,
Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W.,
Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K.,
Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y.,
Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L.,
Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E.,
Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B.,
Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P.,
Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A.,
Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I.,
Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D.,
Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M.,
Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M.,
Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.;
"Sequence and analysis of chromosome 1 of the plant Arabidopsis
thaliana.";
Nature 408:816-820(2000).
[3]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
The Arabidopsis Information Portal (Araport);
Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
PubMed=14593172; DOI=10.1126/science.1088305;
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J.,
Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F.,
Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.,
Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J.,
Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y.,
Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P.,
Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F.,
Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M.,
Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J.,
Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T.,
Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y.,
Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis
genome.";
Science 302:842-846(2003).
[5]
NUCLEOTIDE SEQUENCE [MRNA] OF 76-366.
STRAIN=cv. Columbia;
PubMed=9839469; DOI=10.1046/j.1365-313x.1998.00278.x;
Kranz H.D., Denekamp M., Greco R., Jin H.-L., Leyva A., Meissner R.C.,
Petroni K., Urzainqui A., Bevan M., Martin C., Smeekens S.,
Tonelli C., Paz-Ares J., Weisshaar B.;
"Towards functional characterisation of the members of the R2R3-MYB
gene family from Arabidopsis thaliana.";
Plant J. 16:263-276(1998).
[6]
FUNCTION, SUBCELLULAR LOCATION, TISSUE SPECIFICITY, AND DISRUPTION
PHENOTYPE.
PubMed=16005292; DOI=10.1016/j.cub.2005.06.041;
Liang Y.K., Dubos C., Dodd I.C., Holroyd G.H., Hetherington A.M.,
Campbell M.M.;
"AtMYB61, an R2R3-MYB transcription factor controlling stomatal
aperture in Arabidopsis thaliana.";
Curr. Biol. 15:1201-1206(2005).
[7]
FUNCTION, AND DISRUPTION PHENOTYPE.
PubMed=19401413; DOI=10.1093/jxb/erp102;
Arsovski A.A., Villota M.M., Rowland O., Subramaniam R., Western T.L.;
"MUM ENHANCERS are important for seed coat mucilage production and
mucilage secretory cell differentiation in Arabidopsis thaliana.";
J. Exp. Bot. 60:2601-2612(2009).
[8]
FUNCTION, TISSUE SPECIFICITY, AND DISRUPTION PHENOTYPE.
PubMed=22708996; DOI=10.1111/j.1469-8137.2012.04201.x;
Romano J.M., Dubos C., Prouse M.B., Wilkins O., Hong H., Poole M.,
Kang K.Y., Li E., Douglas C.J., Western T.L., Mansfield S.D.,
Campbell M.M.;
"AtMYB61, an R2R3-MYB transcription factor, functions as a pleiotropic
regulator via a small gene network.";
New Phytol. 195:774-786(2012).
[9]
FUNCTION.
PubMed=23741471; DOI=10.1371/journal.pone.0065132;
Prouse M.B., Campbell M.M.;
"Interactions between the R2R3-MYB transcription factor, AtMYB61, and
target DNA binding sites.";
PLoS ONE 8:E65132-E65132(2013).
[10]
FUNCTION.
PubMed=28207974; DOI=10.1111/tpj.13509;
Matias-Hernandez L., Jiang W., Yang K., Tang K., Brodelius P.E.,
Pelaz S.;
"AaMYB1, and its orthologue AtMYB61, affect terpene metabolism and
trichome development in Artemisia annua and Arabidopsis thaliana.";
Plant J. 90:520-534(2017).
-!- FUNCTION: Transcription factor that coordinates a small network of
downstream target genes required for several aspects of plant
growth and development, such as xylem formation and xylem cell
differentiation, and lateral root formation (PubMed:22708996).
Regulates a specific set of target genes by binding DNA to the AC
cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a
transcriptional regulator of stomatal closure. Plays a role the
regulation of stomatal pore size independently of abscisic acid
(ABA) (PubMed:16005292). Required for seed coat mucilage
deposition during the development of the seed coat epidermis
(PubMed:19401413). Involved in the induction of trichome
initiation and branching by positively regulating GL1 and GL2.
Required for gibberellin (GA) biosynthesis and degradation by
positively affecting the expression of the enzymes that convert
GA9 into the bioactive GA4, as well as the enzymes involved in the
degradation of GA4 (PubMed:28207974).
{ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413,
ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471,
ECO:0000269|PubMed:28207974}.
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-
ProRule:PRU00625, ECO:0000269|PubMed:16005292}.
-!- TISSUE SPECIFICITY: Expressed specifically in guard cells
(PubMed:16005292). Expressed in sink tissues, such as xylem, roots
and developing seeds (PubMed:22708996).
{ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:22708996}.
-!- DISRUPTION PHENOTYPE: Increased stomatal pore opening
(PubMed:16005292). Reduced amount of seed mucilage
(PubMed:19401413). Early germination, slow growth, delayed
flowering and senescence (PubMed:22708996).
{ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413,
ECO:0000269|PubMed:22708996}.
-!- SEQUENCE CAUTION:
Sequence=AAC33214.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
-----------------------------------------------------------------------
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EMBL; AY519552; AAS10022.1; -; mRNA.
EMBL; AC003970; AAC33214.1; ALT_SEQ; Genomic_DNA.
EMBL; CP002684; AEE28459.1; -; Genomic_DNA.
EMBL; AY063939; AAL36295.1; -; mRNA.
EMBL; AY096523; AAM20173.1; -; mRNA.
EMBL; AF062896; AAC83618.1; -; mRNA.
PIR; A86229; A86229.
PIR; T51668; T51668.
RefSeq; NP_172425.2; NM_100825.5.
UniGene; At.10913; -.
ProteinModelPortal; Q8VZQ2; -.
SMR; Q8VZQ2; -.
STRING; 3702.AT1G09540.1; -.
iPTMnet; Q8VZQ2; -.
PaxDb; Q8VZQ2; -.
EnsemblPlants; AT1G09540.1; AT1G09540.1; AT1G09540.
GeneID; 837480; -.
Gramene; AT1G09540.1; AT1G09540.1; AT1G09540.
KEGG; ath:AT1G09540; -.
Araport; AT1G09540; -.
TAIR; locus:2012375; AT1G09540.
eggNOG; KOG0048; Eukaryota.
eggNOG; COG5147; LUCA.
KO; K09422; -.
OMA; SNFFDNG; -.
OrthoDB; EOG09360FFL; -.
PRO; PR:Q8VZQ2; -.
Proteomes; UP000006548; Chromosome 1.
ExpressionAtlas; Q8VZQ2; baseline and differential.
GO; GO:0005634; C:nucleus; IBA:GO_Central.
GO; GO:0000981; F:RNA polymerase II transcription factor activity, sequence-specific DNA binding; IBA:GO_Central.
GO; GO:0043565; F:sequence-specific DNA binding; IBA:GO_Central.
GO; GO:0001135; F:transcription factor activity, RNA polymerase II transcription factor recruiting; IBA:GO_Central.
GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IDA:TAIR.
GO; GO:0044212; F:transcription regulatory region DNA binding; IBA:GO_Central.
GO; GO:0030154; P:cell differentiation; IBA:GO_Central.
GO; GO:0010119; P:regulation of stomatal movement; IMP:TAIR.
GO; GO:0006357; P:regulation of transcription from RNA polymerase II promoter; IBA:GO_Central.
GO; GO:0009733; P:response to auxin; IEP:TAIR.
GO; GO:0048364; P:root development; IMP:TAIR.
GO; GO:0010214; P:seed coat development; IMP:TAIR.
GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW.
GO; GO:0001944; P:vasculature development; IMP:TAIR.
GO; GO:0010089; P:xylem development; IMP:TAIR.
CDD; cd00167; SANT; 2.
InterPro; IPR009057; Homeobox-like_sf.
InterPro; IPR017930; Myb_dom.
InterPro; IPR001005; SANT/Myb.
Pfam; PF00249; Myb_DNA-binding; 2.
SMART; SM00717; SANT; 2.
SUPFAM; SSF46689; SSF46689; 1.
PROSITE; PS51294; HTH_MYB; 2.
2: Evidence at transcript level;
Complete proteome; Developmental protein; DNA-binding; Nucleus;
Reference proteome; Repeat; Transcription; Transcription regulation.
CHAIN 1 366 Transcription factor MYB61.
/FTId=PRO_0000439653.
DOMAIN 9 61 HTH myb-type 1. {ECO:0000255|PROSITE-
ProRule:PRU00625}.
DOMAIN 62 116 HTH myb-type 2. {ECO:0000255|PROSITE-
ProRule:PRU00625}.
DNA_BIND 37 61 H-T-H motif. {ECO:0000255|PROSITE-
ProRule:PRU00625}.
DNA_BIND 89 112 H-T-H motif. {ECO:0000255|PROSITE-
ProRule:PRU00625}.
CONFLICT 231 231 P -> H (in Ref. 5; AAC83618).
{ECO:0000305}.
SEQUENCE 366 AA; 40891 MW; CFB4773458EB5C62 CRC64;
MGRHSCCYKQ KLRKGLWSPE EDEKLLTHIT NHGHGCWSSV PKLAGLQRCG KSCRLRWINY
LRPDLKRGAF SPEEENLIVE LHAVLGNRWS QIASRLPGRT DNEIKNLWNS SIKKKLKQRG
IDPNTHKPIS EVESFSDKDK PTTSNNKRSG NDHKSPSSSS ATNQDFFLER PSDLSDYFGF
QKLNFNSNLG LSVTTDSSLC SMIPPQFSPG NMVGSVLQTP VCVKPSISLP PDNNSSSPIS
GGDHVKLAAP NWEFQTNNNN TSNFFDNGGF SWSIPNSSTS SSQVKPNHNF EEIKWSEYLN
TPFFIGSTVQ SQTSQPIYIK SETDYLANVS NMTDPWSQNE NLGTTETSDV FSKDLQRMAV
SFGQSL


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