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Transcription factor MYB80 (MYB-related protein 103) (AtMYB103) (Myb-related protein 80) (AtMYB80) (Protein MALE STERILE 188)

 MYB80_ARATH             Reviewed;         320 AA.
Q9XHV0;
08-JUN-2016, integrated into UniProtKB/Swiss-Prot.
01-NOV-1999, sequence version 1.
22-NOV-2017, entry version 142.
RecName: Full=Transcription factor MYB80 {ECO:0000305};
AltName: Full=MYB-related protein 103 {ECO:0000303|PubMed:10353220};
Short=AtMYB103 {ECO:0000303|PubMed:10353220};
AltName: Full=Myb-related protein 80 {ECO:0000305};
Short=AtMYB80 {ECO:0000303|PubMed:11597504};
AltName: Full=Protein MALE STERILE 188 {ECO:0000303|PubMed:17727613};
Name=MYB80 {ECO:0000303|PubMed:11597504};
Synonyms=MS188 {ECO:0000303|PubMed:17727613},
MYB103 {ECO:0000303|PubMed:10353220};
OrderedLocusNames=At5g56110 {ECO:0000312|Araport:AT5G56110};
ORFNames=MDA7.17 {ECO:0000312|EMBL:BAB09293.1};
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND TISSUE SPECIFICITY.
STRAIN=cv. Landsberg erecta;
PubMed=10353220; DOI=10.1093/oxfordjournals.pcp.a029548;
Li S.F., Higginson T., Parish R.W.;
"A novel MYB-related gene from Arabidopsis thaliana expressed in
developing anthers.";
Plant Cell Physiol. 40:343-347(1999).
[2]
NUCLEOTIDE SEQUENCE [MRNA].
Qu L., Gu H.;
"The MYB transcription factor family in Arabidopsis: a genome-wide
cloning and expression pattern analysis.";
Submitted (JAN-2004) to the EMBL/GenBank/DDBJ databases.
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=9679202; DOI=10.1093/dnares/5.2.131;
Kaneko T., Kotani H., Nakamura Y., Sato S., Asamizu E., Miyajima N.,
Tabata S.;
"Structural analysis of Arabidopsis thaliana chromosome 5. V. Sequence
features of the regions of 1,381,565 bp covered by twenty one
physically assigned P1 and TAC clones.";
DNA Res. 5:131-145(1998).
[4]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
The Arabidopsis Information Portal (Araport);
Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Fujita M., Mizukado S., Seki M., Shinozaki K., Mitsuda N.,
Takiguchi Y., Takagi M.;
"ORF cloning and analysis of Arabidopsis transcription factor genes.";
Submitted (MAR-2009) to the EMBL/GenBank/DDBJ databases.
[6]
GENE FAMILY, AND NOMENCLATURE.
PubMed=11597504; DOI=10.1016/S1369-5266(00)00199-0;
Stracke R., Werber M., Weisshaar B.;
"The R2R3-MYB gene family in Arabidopsis thaliana.";
Curr. Opin. Plant Biol. 4:447-456(2001).
[7]
FUNCTION, AND TISSUE SPECIFICITY.
PubMed=12848824; DOI=10.1046/j.1365-313X.2003.01791.x;
Higginson T., Li S.F., Parish R.W.;
"AtMYB103 regulates tapetum and trichome development in Arabidopsis
thaliana.";
Plant J. 35:177-192(2003).
[8]
FUNCTION, SUBCELLULAR LOCATION, DISRUPTION PHENOTYPE, AND MUTAGENESIS
OF PRO-41.
PubMed=17727613; DOI=10.1111/j.1365-313X.2007.03254.x;
Zhang Z.B., Zhu J., Gao J.F., Wang C., Li H., Li H., Zhang H.Q.,
Zhang S., Wang D.M., Wang Q.X., Huang H., Xia H.J., Yang Z.N.;
"Transcription factor AtMYB103 is required for anther development by
regulating tapetum development, callose dissolution and exine
formation in Arabidopsis.";
Plant J. 52:528-538(2007).
[9]
DEVELOPMENTAL STAGE.
PubMed=21957980; DOI=10.1111/j.1744-7909.2011.01078.x;
Zhu J., Lou Y., Xu X., Yang Z.N.;
"A genetic pathway for tapetum development and function in
Arabidopsis.";
J. Integr. Plant Biol. 53:892-900(2011).
[10]
FUNCTION.
PubMed=21673079; DOI=10.1105/tpc.110.082651;
Phan H.A., Iacuone S., Li S.F., Parish R.W.;
"The MYB80 transcription factor is required for pollen development and
the regulation of tapetal programmed cell death in Arabidopsis
thaliana.";
Plant Cell 23:2209-2224(2011).
-!- FUNCTION: Transcription factor that binds to the DNA sequence 5'-
CCAACC-3'. Regulates directly PME5, UND and GLOX1
(PubMed:21673079). Essential for tapetum development in anthers
and microsporogenesis (PubMed:12848824, PubMed:21673079).
Regulates the timing of tapetal programmed cell death (PCD) which
is critical for pollen development. May act through the activation
of UND, encoding an A1 aspartic protease (PubMed:21673079).
Required for anther development by regulating tapetum development,
callose dissolution and exine formation. Acts upstream of A6 and
FAR2/MS2, two genes required for pollen exine formation
(PubMed:17727613). Negatively regulates trichome endoreduplication
and trichome branching (PubMed:12848824).
{ECO:0000269|PubMed:12848824, ECO:0000269|PubMed:17727613,
ECO:0000269|PubMed:21673079}.
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-
ProRule:PRU00625, ECO:0000269|PubMed:17727613}.
-!- TISSUE SPECIFICITY: Expressed in the tapetum and middle layer of
developing anthers (PubMed:10353220). Expressed in trichomes
(PubMed:12848824). {ECO:0000269|PubMed:10353220,
ECO:0000269|PubMed:12848824}.
-!- DEVELOPMENTAL STAGE: During anther development, expressed from
stage 4 to stage 6 in microsporocytes and tapetal cells. At the
tetrad stage, expressed predominantly in tapetal cells. During
microgametogenesis, expression decreases radically in the tapetum
and microspores. {ECO:0000269|PubMed:21957980}.
-!- DISRUPTION PHENOTYPE: Male sterility due to distorted pollen
grains lacking reticulate exine on their surface.
{ECO:0000269|PubMed:17727613}.
-!- MISCELLANEOUS: Plants silencing MYB80 have the majority of pollen
grains distorted in shape with reduced or no cytoplasmic content,
display early tapetal degeneration with large opaque bodies in the
tapetal cytoplasm, and trichomes on cauline and rosette leaves
contain increased nuclear DNA content and produces additional
branches. {ECO:0000269|PubMed:12848824}.
-----------------------------------------------------------------------
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-----------------------------------------------------------------------
EMBL; AF048839; AAD40692.1; -; Genomic_DNA.
EMBL; AY519639; AAS10109.1; -; mRNA.
EMBL; AB011476; BAB09293.1; -; Genomic_DNA.
EMBL; CP002688; AED96722.1; -; Genomic_DNA.
EMBL; AB493793; BAH30631.1; -; mRNA.
RefSeq; NP_200422.1; NM_124993.1.
UniGene; At.50533; -.
ProteinModelPortal; Q9XHV0; -.
SMR; Q9XHV0; -.
STRING; 3702.AT5G56110.1; -.
PaxDb; Q9XHV0; -.
EnsemblPlants; AT5G56110.1; AT5G56110.1; AT5G56110.
GeneID; 835710; -.
Gramene; AT5G56110.1; AT5G56110.1; AT5G56110.
KEGG; ath:AT5G56110; -.
Araport; AT5G56110; -.
TAIR; locus:2161820; AT5G56110.
eggNOG; KOG0048; Eukaryota.
eggNOG; COG5147; LUCA.
HOGENOM; HOG000237600; -.
KO; K09422; -.
OMA; GNDERNE; -.
OrthoDB; EOG09360I9R; -.
PRO; PR:Q9XHV0; -.
Proteomes; UP000006548; Chromosome 5.
ExpressionAtlas; Q9XHV0; baseline and differential.
GO; GO:0005634; C:nucleus; IDA:TAIR.
GO; GO:0003682; F:chromatin binding; IDA:TAIR.
GO; GO:0000981; F:RNA polymerase II transcription factor activity, sequence-specific DNA binding; IBA:GO_Central.
GO; GO:0043565; F:sequence-specific DNA binding; IDA:TAIR.
GO; GO:0001135; F:transcription factor activity, RNA polymerase II transcription factor recruiting; IBA:GO_Central.
GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:TAIR.
GO; GO:0044212; F:transcription regulatory region DNA binding; IBA:GO_Central.
GO; GO:0048658; P:anther wall tapetum development; IMP:TAIR.
GO; GO:0009555; P:pollen development; IGI:TAIR.
GO; GO:0006357; P:regulation of transcription from RNA polymerase II promoter; IBA:GO_Central.
GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW.
GO; GO:0010090; P:trichome morphogenesis; IMP:TAIR.
CDD; cd00167; SANT; 2.
InterPro; IPR009057; Homeobox-like_sf.
InterPro; IPR017930; Myb_dom.
InterPro; IPR001005; SANT/Myb.
Pfam; PF00249; Myb_DNA-binding; 2.
SMART; SM00717; SANT; 2.
SUPFAM; SSF46689; SSF46689; 1.
PROSITE; PS51294; HTH_MYB; 2.
1: Evidence at protein level;
Complete proteome; Developmental protein; DNA-binding; Nucleus;
Reference proteome; Repeat; Transcription; Transcription regulation.
CHAIN 1 320 Transcription factor MYB80.
/FTId=PRO_0000436452.
DOMAIN 9 65 HTH myb-type 1. {ECO:0000255|PROSITE-
ProRule:PRU00625}.
DOMAIN 66 116 HTH myb-type 2. {ECO:0000255|PROSITE-
ProRule:PRU00625}.
DNA_BIND 37 61 H-T-H motif. {ECO:0000255|PROSITE-
ProRule:PRU00625}.
DNA_BIND 89 112 H-T-H motif. {ECO:0000255|PROSITE-
ProRule:PRU00625}.
COMPBIAS 294 299 His-rich. {ECO:0000255|PROSITE-
ProRule:PRU00009}.
MUTAGEN 41 41 P->L: In ms188-2; male sterility.
{ECO:0000269|PubMed:17727613}.
SEQUENCE 320 AA; 35983 MW; A6333EE5D22269CF CRC64;
MGRIPCCEKE NVKRGQWTPE EDNKLASYIA QHGTRNWRLI PKNAGLQRCG KSCRLRWTNY
LRPDLKHGQF SEAEEHIIVK FHSVLGNRWS LIAAQLPGRT DNDVKNYWNT KLKKKLSGMG
IDPVTHKPFS HLMAEITTTL NPPQVSHLAE AALGCFKDEM LHLLTKKRVD LNQINFSNHN
PNPNNFHEIA DNEAGKIKMD GLDHGNGIMK LWDMGNGFSY GSSSSSFGNE ERNDGSASPA
VAAWRGHGGI RTAVAETAAA EEEERRKLKG EVVDQEEIGS EGGRGDGMTM MRNHHHHQHV
FNVDNVLWDL QADDLINHMV


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