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Transcription factor MYC3 (Basic helix-loop-helix protein 5) (AtbHLH5) (bHLH 5) (Protein ALTERED TRYPTOPHAN REGULATION 2) (Transcription factor ATR2) (Transcription factor EN 36) (bHLH transcription factor bHLH005)

 MYC3_ARATH              Reviewed;         592 AA.
Q9FIP9; Q8W2F5;
16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
01-MAR-2001, sequence version 1.
25-APR-2018, entry version 113.
RecName: Full=Transcription factor MYC3;
AltName: Full=Basic helix-loop-helix protein 5;
Short=AtbHLH5;
Short=bHLH 5;
AltName: Full=Protein ALTERED TRYPTOPHAN REGULATION 2;
AltName: Full=Transcription factor ATR2;
AltName: Full=Transcription factor EN 36;
AltName: Full=bHLH transcription factor bHLH005;
Name=MYC3; Synonyms=ATR2, BHLH5, EN36; OrderedLocusNames=At5g46760;
ORFNames=MZA15.18;
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY, GENE FAMILY, AND
NOMENCLATURE.
STRAIN=cv. Columbia;
PubMed=12679534; DOI=10.1093/molbev/msg088;
Heim M.A., Jakoby M., Werber M., Martin C., Weisshaar B., Bailey P.C.;
"The basic helix-loop-helix transcription factor family in plants: a
genome-wide study of protein structure and functional diversity.";
Mol. Biol. Evol. 20:735-747(2003).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=10048488; DOI=10.1093/dnares/5.6.379;
Asamizu E., Sato S., Kaneko T., Nakamura Y., Kotani H., Miyajima N.,
Tabata S.;
"Structural analysis of Arabidopsis thaliana chromosome 5. VIII.
Sequence features of the regions of 1,081,958 bp covered by seventeen
physically assigned P1 and TAC clones.";
DNA Res. 5:379-391(1998).
[3]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
PubMed=27862469; DOI=10.1111/tpj.13415;
Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
Town C.D.;
"Araport11: a complete reannotation of the Arabidopsis thaliana
reference genome.";
Plant J. 89:789-804(2017).
[4]
FUNCTION, MUTAGENESIS OF ASP-94, AND TISSUE SPECIFICITY.
PubMed=12136026;
Smolen G.A., Pawlowski L., Wilensky S.E., Bender J.;
"Dominant alleles of the basic helix-loop-helix transcription factor
ATR2 activate stress-responsive genes in Arabidopsis.";
Genetics 161:1235-1246(2002).
[5]
GENE FAMILY.
PubMed=12897250; DOI=10.1105/tpc.013839;
Toledo-Ortiz G., Huq E., Quail P.H.;
"The Arabidopsis basic/helix-loop-helix transcription factor family.";
Plant Cell 15:1749-1770(2003).
[6]
GENE FAMILY, AND NOMENCLATURE.
PubMed=14600211; DOI=10.1105/tpc.151140;
Bailey P.C., Martin C., Toledo-Ortiz G., Quail P.H., Huq E.,
Heim M.A., Jakoby M., Werber M., Weisshaar B.;
"Update on the basic helix-loop-helix transcription factor gene family
in Arabidopsis thaliana.";
Plant Cell 15:2497-2502(2003).
[7]
INTERACTION WITH TIFY10A/JAZ1.
PubMed=20360743; DOI=10.1038/nature08854;
Pauwels L., Barbero G.F., Geerinck J., Tilleman S., Grunewald W.,
Perez A.C., Chico J.M., Bossche R.V., Sewell J., Gil E.,
Garcia-Casado G., Witters E., Inze D., Long J.A., De Jaeger G.,
Solano R., Goossens A.;
"NINJA connects the co-repressor TOPLESS to jasmonate signalling.";
Nature 464:788-791(2010).
[8]
FUNCTION, INTERACTION WITH TIFY10A/JAZ1; TIFY6B/JAZ3 AND TIFY7/JAZ9,
SUBCELLULAR LOCATION, AND DISRUPTION PHENOTYPE.
PubMed=21321051; DOI=10.1093/jxb/erq408;
Niu Y., Figueroa P., Browse J.;
"Characterization of JAZ-interacting bHLH transcription factors that
regulate jasmonate responses in Arabidopsis.";
J. Exp. Bot. 62:2143-2154(2011).
[9]
FUNCTION, INTERACTION WITH TIFY10A/JAZ1; TIFY10B/JAZ2; TIFY11A/JAZ5;
TIFY11B/JAZ6; TIFY5A/JAZ8; TIFY7/JAZ9; TIFY9/JAZ10 AND TIFY3A/JAZ11,
DOMAIN, SUBCELLULAR LOCATION, AND INDUCTION BY JASMONIC ACID.
PubMed=21242320; DOI=10.1093/mp/ssq073;
Cheng Z., Sun L., Qi T., Zhang B., Peng W., Liu Y., Xie D.;
"The bHLH transcription factor MYC3 interacts with the Jasmonate ZIM-
domain proteins to mediate jasmonate response in Arabidopsis.";
Mol. Plant 4:279-288(2011).
[10]
FUNCTION, INTERACTION WITH TIFY10A/JAZ1; TIFY10B/JAZ2; TIFY6B/JAZ3;
TIFY11A/JAZ5; TIFY11B/JAZ6; TIFY5B/JAZ7; TIFY5A/JAZ8; TIFY7/JAZ9;
TIFY9/JAZ10; TIFY3A/JAZ11; TIFY3B/JAZ12; MYC2; MYC4 AND AFPH2/NINJA,
SUBUNIT, DOMAIN, SUBCELLULAR LOCATION, TISSUE SPECIFICITY, INDUCTION
BY JASMONIC ACID, AND DISRUPTION PHENOTYPE.
PubMed=21335373; DOI=10.1105/tpc.110.080788;
Fernandez-Calvo P., Chini A., Fernandez-Barbero G., Chico J.M.,
Gimenez-Ibanez S., Geerinck J., Eeckhout D., Schweizer F., Godoy M.,
Franco-Zorrilla J.M., Pauwels L., Witters E., Puga M.I., Paz-Ares J.,
Goossens A., Reymond P., De Jaeger G., Solano R.;
"The Arabidopsis bHLH transcription factors MYC3 and MYC4 are targets
of JAZ repressors and act additively with MYC2 in the activation of
jasmonate responses.";
Plant Cell 23:701-715(2011).
[11]
FUNCTION, DISRUPTION PHENOTYPE, DOMAIN, AND INTERACTION WITH MYB28;
MYB29; MYB34; MYB51; MYB76 AND MYB122.
PubMed=23943862; DOI=10.1105/tpc.113.115139;
Schweizer F., Fernandez-Calvo P., Zander M., Diez-Diaz M., Fonseca S.,
Glauser G., Lewsey M.G., Ecker J.R., Solano R., Reymond P.;
"Arabidopsis basic helix-loop-helix transcription factors MYC2, MYC3,
and MYC4 regulate glucosinolate biosynthesis, insect performance, and
feeding behavior.";
Plant Cell 25:3117-3132(2013).
-!- FUNCTION: Transcription factor involved in tryptophan, jasmonic
acid (JA) and other stress-responsive gene regulation. With MYC2
and MYC4, controls additively subsets of JA-dependent responses.
Can form complexes with all known glucosinolate-related MYBs to
regulate glucosinolate biosynthesis. Binds to the G-box (5'-
CACGTG-3') of promoters. Activates multiple TIFY/JAZ promoters.
{ECO:0000269|PubMed:12136026, ECO:0000269|PubMed:21242320,
ECO:0000269|PubMed:21321051, ECO:0000269|PubMed:21335373,
ECO:0000269|PubMed:23943862}.
-!- SUBUNIT: Homo- and heterodimer. Interacts with MYB28, MYB29,
MYB34, MYB51, MYB76, MYB122, MYC2, MYC4, AFPH2/NINJA and the JAZ
repressors TIFY10A/JAZ1, TIFY10B/JAZ2, TIFY6B/JAZ3, TIFY11A/JAZ5,
TIFY11B/JAZ6, TIFY5B/JAZ7, TIFY5A/JAZ8, TIFY7/JAZ9, TIFY9/JAZ10,
TIFY3A/JAZ11 and TIFY3B/JAZ12. {ECO:0000269|PubMed:20360743,
ECO:0000269|PubMed:21242320, ECO:0000269|PubMed:21321051,
ECO:0000269|PubMed:21335373, ECO:0000269|PubMed:23943862}.
-!- INTERACTION:
Q7XYY2-1:MED25; NbExp=2; IntAct=EBI-15845995, EBI-15924435;
Q9LMA8:TIFY10A; NbExp=3; IntAct=EBI-15845995, EBI-1388539;
Q9C5K8:TIFY3B; NbExp=2; IntAct=EBI-15845995, EBI-2312231;
Q8LBM2:TIFY5A; NbExp=2; IntAct=EBI-15845995, EBI-2312143;
Q8W4J8:TIFY7; NbExp=5; IntAct=EBI-15845995, EBI-1792583;
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-
ProRule:PRU00981, ECO:0000269|PubMed:21242320,
ECO:0000269|PubMed:21321051, ECO:0000269|PubMed:21335373}.
-!- TISSUE SPECIFICITY: Constitutively expressed in roots, stems,
leaves, flowers, and seedlings. {ECO:0000269|PubMed:12136026,
ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:21335373}.
-!- INDUCTION: Barely up-regulated by jasmonic acid.
{ECO:0000269|PubMed:21242320, ECO:0000269|PubMed:21335373}.
-!- DOMAIN: The JAZ-interaction domain (JID) (82-141) is sufficient
for interaction with MYB proteins and most of the TIFY/JAZ
proteins (PubMed:21335373 and PubMed:23943862).
{ECO:0000269|PubMed:21242320, ECO:0000269|PubMed:21335373,
ECO:0000269|PubMed:23943862}.
-!- DISRUPTION PHENOTYPE: Minor effect on jasmonic acid response and
no effect on glucosinolate biosynthesis. Myc2 and myc3 double
mutant has an increased insensitivity to jasmonic acid. Myc2, myc3
and myc4 triple mutant has no jasmonate-related defense response,
is devoid of glucosinolates and is extremely susceptible to
generalist herbivores. {ECO:0000269|PubMed:21321051,
ECO:0000269|PubMed:21335373, ECO:0000269|PubMed:23943862}.
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EMBL; AF251690; AAL55712.1; -; mRNA.
EMBL; AB016882; BAB08920.1; -; Genomic_DNA.
EMBL; CP002688; AED95422.1; -; Genomic_DNA.
RefSeq; NP_199488.1; NM_124046.2.
UniGene; At.28315; -.
PDB; 4RQW; X-ray; 2.20 A; A/B=44-238.
PDB; 4RRU; X-ray; 2.10 A; A=5-242.
PDB; 4RS9; X-ray; 1.95 A; A=44-238.
PDB; 4YWC; X-ray; 2.40 A; A/B=5-242.
PDB; 4YZ6; X-ray; 1.95 A; A=44-238.
PDB; 5T0F; X-ray; 2.40 A; A=44-242.
PDB; 5T0Q; X-ray; 2.15 A; A=44-242.
PDBsum; 4RQW; -.
PDBsum; 4RRU; -.
PDBsum; 4RS9; -.
PDBsum; 4YWC; -.
PDBsum; 4YZ6; -.
PDBsum; 5T0F; -.
PDBsum; 5T0Q; -.
ProteinModelPortal; Q9FIP9; -.
SMR; Q9FIP9; -.
BioGrid; 19967; 28.
DIP; DIP-58585N; -.
IntAct; Q9FIP9; 13.
STRING; 3702.AT5G46760.1; -.
iPTMnet; Q9FIP9; -.
PaxDb; Q9FIP9; -.
PRIDE; Q9FIP9; -.
EnsemblPlants; AT5G46760.1; AT5G46760.1; AT5G46760.
GeneID; 834719; -.
Gramene; AT5G46760.1; AT5G46760.1; AT5G46760.
KEGG; ath:AT5G46760; -.
Araport; AT5G46760; -.
TAIR; locus:2178555; AT5G46760.
eggNOG; ENOG410IGFU; Eukaryota.
eggNOG; ENOG410YCJJ; LUCA.
HOGENOM; HOG000238207; -.
OMA; ALWISEP; -.
OrthoDB; EOG093607T9; -.
PhylomeDB; Q9FIP9; -.
PRO; PR:Q9FIP9; -.
Proteomes; UP000006548; Chromosome 5.
ExpressionAtlas; Q9FIP9; baseline and differential.
Genevisible; Q9FIP9; AT.
GO; GO:0005634; C:nucleus; IDA:TAIR.
GO; GO:0043425; F:bHLH transcription factor binding; IPI:TAIR.
GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO; GO:0003700; F:DNA binding transcription factor activity; ISS:TAIR.
GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
GO; GO:0009718; P:anthocyanin-containing compound biosynthetic process; IMP:TAIR.
GO; GO:0006952; P:defense response; IMP:TAIR.
GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IDA:TAIR.
GO; GO:0006355; P:regulation of transcription, DNA-templated; TAS:TAIR.
GO; GO:0009753; P:response to jasmonic acid; IMP:TAIR.
GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW.
CDD; cd00083; HLH; 1.
Gene3D; 4.10.280.10; -; 1.
InterPro; IPR011598; bHLH_dom.
InterPro; IPR036638; HLH_DNA-bd_sf.
InterPro; IPR025610; MYC/MYB_N.
Pfam; PF14215; bHLH-MYC_N; 1.
Pfam; PF00010; HLH; 1.
SMART; SM00353; HLH; 1.
SUPFAM; SSF47459; SSF47459; 1.
PROSITE; PS50888; BHLH; 1.
1: Evidence at protein level;
3D-structure; Complete proteome; DNA-binding; Nucleus; Plant defense;
Reference proteome; Transcription; Transcription regulation.
CHAIN 1 592 Transcription factor MYC3.
/FTId=PRO_0000358723.
DOMAIN 411 460 bHLH. {ECO:0000255|PROSITE-
ProRule:PRU00981}.
REGION 82 141 JAZ-interaction domain.
COMPBIAS 232 291 Asn-rich.
MUTAGEN 94 94 D->A,Q,S: Exhibits an atr2D-like
phenotype; dominant resistance to 5-
methyl-tryptophan (5MT), a toxic
tryptophan analog.
{ECO:0000269|PubMed:12136026}.
MUTAGEN 94 94 D->E: No effect, normal sensitivity to
5MT. {ECO:0000269|PubMed:12136026}.
MUTAGEN 94 94 D->N: In atr2D; dominant resistance to
5MT. {ECO:0000269|PubMed:12136026}.
CONFLICT 2 2 N -> D (in Ref. 1; AAL55712).
{ECO:0000305}.
HELIX 8 10 {ECO:0000244|PDB:4RRU}.
STRAND 11 15 {ECO:0000244|PDB:4RRU}.
HELIX 17 25 {ECO:0000244|PDB:4RRU}.
HELIX 49 51 {ECO:0000244|PDB:4RS9}.
HELIX 52 62 {ECO:0000244|PDB:4RS9}.
STRAND 69 79 {ECO:0000244|PDB:4RS9}.
TURN 81 83 {ECO:0000244|PDB:4RS9}.
STRAND 86 97 {ECO:0000244|PDB:4RS9}.
HELIX 112 127 {ECO:0000244|PDB:4RS9}.
HELIX 146 154 {ECO:0000244|PDB:4RS9}.
STRAND 158 160 {ECO:0000244|PDB:4RS9}.
HELIX 164 171 {ECO:0000244|PDB:4RS9}.
STRAND 175 180 {ECO:0000244|PDB:4RS9}.
HELIX 181 185 {ECO:0000244|PDB:4RS9}.
HELIX 190 197 {ECO:0000244|PDB:4RS9}.
STRAND 202 208 {ECO:0000244|PDB:4RS9}.
STRAND 211 219 {ECO:0000244|PDB:4RS9}.
HELIX 225 234 {ECO:0000244|PDB:4RS9}.
SEQUENCE 592 AA; 64992 MW; 3E29BA18971E4F26 CRC64;
MNGTTSSINF LTSDDDASAA AMEAFIGTNH HSSLFPPPPQ QPPQPQFNED TLQQRLQALI
ESAGENWTYA IFWQISHDFD SSTGDNTVIL GWGDGYYKGE EDKEKKKNNT NTAEQEHRKR
VIRELNSLIS GGIGVSDESN DEEVTDTEWF FLVSMTQSFV NGVGLPGESF LNSRVIWLSG
SGALTGSGCE RAGQGQIYGL KTMVCIATQN GVVELGSSEV ISQSSDLMHK VNNLFNFNNG
GGNNGVEASS WGFNLNPDQG ENDPALWISE PTNTGIESPA RVNNGNNSNS NSKSDSHQIS
KLEKNDISSV ENQNRQSSCL VEKDLTFQGG LLKSNETLSF CGNESSKKRT SVSKGSNNDE
GMLSFSTVVR SAANDSDHSD LEASVVKEAI VVEPPEKKPR KRGRKPANGR EEPLNHVEAE
RQRREKLNQR FYSLRAVVPN VSKMDKASLL GDAISYINEL KSKLQQAESD KEEIQKKLDG
MSKEGNNGKG CGSRAKERKS SNQDSTASSI EMEIDVKIIG WDVMIRVQCG KKDHPGARFM
EALKELDLEV NHASLSVVND LMIQQATVKM GSQFFNHDQL KVALMTKVGE NY


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