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Transcription factor PIF6 (Basic helix-loop-helix protein 132) (AtbHLH132) (bHLH 132) (Protein PHYTOCHROME INTERACTING FACTOR 3-LIKE 2) (Protein PHYTOCHROME-INTERACTING FACTOR 6) (Transcription factor EN 111) (bHLH transcription factor bHLH132)

 PIF6_ARATH              Reviewed;         363 AA.
Q8L5W7; A8MSC2; Q9M1R5;
16-DEC-2008, integrated into UniProtKB/Swiss-Prot.
01-OCT-2002, sequence version 1.
30-AUG-2017, entry version 96.
RecName: Full=Transcription factor PIF6;
AltName: Full=Basic helix-loop-helix protein 132;
Short=AtbHLH132;
Short=bHLH 132;
AltName: Full=Protein PHYTOCHROME INTERACTING FACTOR 3-LIKE 2;
AltName: Full=Protein PHYTOCHROME-INTERACTING FACTOR 6;
AltName: Full=Transcription factor EN 111;
AltName: Full=bHLH transcription factor bHLH132;
Name=PIF6; Synonyms=BHLH132, EN111, PIL2; OrderedLocusNames=At3g62090;
ORFNames=T17J13.50;
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
PubMed=11828023; DOI=10.1093/pcp/pcf005;
Makino S., Matsushika A., Kojima M., Yamashino T., Mizuno T.;
"The APRR1/TOC1 quintet implicated in circadian rhythms of Arabidopsis
thaliana: I. Characterization with APRR1-overexpressing plants.";
Plant Cell Physiol. 43:58-69(2002).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=11130713; DOI=10.1038/35048706;
Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M.,
Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B.,
Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P.,
De Simone V., Choisne N., Artiguenave F., Robert C., Brottier P.,
Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F.,
Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V.,
Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S.,
Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G.,
Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B.,
Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G.,
Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J.,
Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D.,
Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
Monfort A., Argiriou A., Flores M., Liguori R., Vitale D.,
Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W.,
Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J.,
Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P.,
Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S.,
Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V.,
Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C.,
Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E.,
Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y.,
Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A.,
Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
Watanabe A., Yamada M., Yasuda M., Tabata S.;
"Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana.";
Nature 408:820-822(2000).
[3]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
The Arabidopsis Information Portal (Araport);
Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
STRAIN=cv. Columbia;
De Los Reyes C., Quan R., Chen H., Bautista V.R., Kim C.J.,
Ecker J.R.;
"Arabidopsis ORF clones.";
Submitted (JUN-2008) to the EMBL/GenBank/DDBJ databases.
[5]
GENE FAMILY, AND NOMENCLATURE.
PubMed=12679534; DOI=10.1093/molbev/msg088;
Heim M.A., Jakoby M., Werber M., Martin C., Weisshaar B., Bailey P.C.;
"The basic helix-loop-helix transcription factor family in plants: a
genome-wide study of protein structure and functional diversity.";
Mol. Biol. Evol. 20:735-747(2003).
[6]
GENE FAMILY.
PubMed=12897250; DOI=10.1105/tpc.013839;
Toledo-Ortiz G., Huq E., Quail P.H.;
"The Arabidopsis basic/helix-loop-helix transcription factor family.";
Plant Cell 15:1749-1770(2003).
[7]
GENE FAMILY, AND NOMENCLATURE.
PubMed=14600211; DOI=10.1105/tpc.151140;
Bailey P.C., Martin C., Toledo-Ortiz G., Quail P.H., Huq E.,
Heim M.A., Jakoby M., Werber M., Weisshaar B.;
"Update on the basic helix-loop-helix transcription factor gene family
in Arabidopsis thaliana.";
Plant Cell 15:2497-2502(2003).
[8]
INTERACTION WITH APRR1/TOC1.
PubMed=12826627; DOI=10.1093/pcp/pcg078;
Yamashino T., Matsushika A., Fujimori T., Sato S., Kato T., Tabata S.,
Mizuno T.;
"A link between circadian-controlled bHLH factors and the APRR1/TOC1
quintet in Arabidopsis thaliana.";
Plant Cell Physiol. 44:619-629(2003).
[9]
INTERACTION WITH RGL2 AND RGA.
STRAIN=cv. Landsberg erecta;
PubMed=20093430; DOI=10.1093/molbev/msq012;
Gallego-Bartolome J., Minguet E.G., Marin J.A., Prat S.,
Blazquez M.A., Alabadi D.;
"Transcriptional diversification and functional conservation between
DELLA proteins in Arabidopsis.";
Mol. Biol. Evol. 27:1247-1256(2010).
-!- SUBUNIT: Homodimer (Probable). Interacts with APRR1/TOC1. Binds to
RGL2 and RGA. {ECO:0000269|PubMed:12826627,
ECO:0000269|PubMed:20093430, ECO:0000305}.
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-
ProRule:PRU00981}.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=2;
Name=1;
IsoId=Q8L5W7-1; Sequence=Displayed;
Name=2;
IsoId=Q8L5W7-2; Sequence=VSP_036113;
Note=No experimental confirmation available.;
-!- SEQUENCE CAUTION:
Sequence=CAB71869.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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EMBL; AB090874; BAC10690.1; -; Transcribed_RNA.
EMBL; AL138651; CAB71869.1; ALT_SEQ; Genomic_DNA.
EMBL; CP002686; AEE80306.1; -; Genomic_DNA.
EMBL; CP002686; AEE80307.1; -; Genomic_DNA.
EMBL; BT033108; ACF16169.1; -; mRNA.
PIR; T48001; T48001.
RefSeq; NP_001078329.1; NM_001084860.1. [Q8L5W7-1]
RefSeq; NP_191768.2; NM_116074.2. [Q8L5W7-2]
UniGene; At.1005; -.
UniGene; At.50304; -.
ProteinModelPortal; Q8L5W7; -.
BioGrid; 10696; 7.
IntAct; Q8L5W7; 2.
STRING; 3702.AT3G62090.2; -.
PaxDb; Q8L5W7; -.
EnsemblPlants; AT3G62090.1; AT3G62090.1; AT3G62090. [Q8L5W7-2]
EnsemblPlants; AT3G62090.2; AT3G62090.2; AT3G62090. [Q8L5W7-1]
GeneID; 825382; -.
Gramene; AT3G62090.1; AT3G62090.1; AT3G62090.
Gramene; AT3G62090.2; AT3G62090.2; AT3G62090.
KEGG; ath:AT3G62090; -.
Araport; AT3G62090; -.
TAIR; locus:2098008; AT3G62090.
eggNOG; ENOG410JWJQ; Eukaryota.
eggNOG; ENOG41104VA; LUCA.
HOGENOM; HOG000115543; -.
InParanoid; Q8L5W7; -.
OMA; ETNMLES; -.
OrthoDB; EOG09360FSN; -.
PhylomeDB; Q8L5W7; -.
PRO; PR:Q8L5W7; -.
Proteomes; UP000006548; Chromosome 3.
ExpressionAtlas; Q8L5W7; baseline and differential.
Genevisible; Q8L5W7; AT.
GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; ISS:TAIR.
GO; GO:0010017; P:red or far-red light signaling pathway; IEP:TAIR.
GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW.
CDD; cd00083; HLH; 1.
Gene3D; 4.10.280.10; -; 1.
InterPro; IPR011598; bHLH_dom.
Pfam; PF00010; HLH; 1.
SMART; SM00353; HLH; 1.
SUPFAM; SSF47459; SSF47459; 1.
PROSITE; PS50888; BHLH; 1.
1: Evidence at protein level;
Alternative splicing; Complete proteome; DNA-binding; Nucleus;
Reference proteome; Transcription; Transcription regulation.
CHAIN 1 363 Transcription factor PIF6.
/FTId=PRO_0000358852.
DOMAIN 188 237 bHLH. {ECO:0000255|PROSITE-
ProRule:PRU00981}.
COMPBIAS 243 276 Met-rich.
VAR_SEQ 1 17 Missing (in isoform 2).
{ECO:0000303|Ref.4}.
/FTId=VSP_036113.
SEQUENCE 363 AA; 40547 MW; 15AD124E07949873 CRC64;
MMFLPTDYCC RLSDQEYMEL VFENGQILAK GQRSNVSLHN QRTKSIMDLY EAEYNEDFMK
SIIHGGGGAI TNLGDTQVVP QSHVAAAHET NMLESNKHVD DSETLKASSS KRMMVDYHNR
KKIKFIPPDE QSVVADRSFK LGFDTSSVGF TEDSEGSMYL SSSLDDESDD ARPQVPARTR
KALVKRKRNA EAYNSPERNQ RNDINKKMRT LQNLLPNSHK DDNESMLDEA INYMTNLQLQ
VQMMTMGNRF VTPSMMMPLG PNYSQMGLAM GVGMQMGEQQ FLPAHVLGAG LPGINDSADM
LRFLNHPGLM PMQNSAPFIP TENCSPQSVP PSCAAFPNQI PNPNSLSNLD GATLHKKSRK
TNR


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