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Transcription factor SOX-11

 SOX11_MOUSE             Reviewed;         395 AA.
Q7M6Y2; O35178; O89036; Q04889; Q80XF0;
27-JUN-2006, integrated into UniProtKB/Swiss-Prot.
15-DEC-2003, sequence version 1.
07-JUN-2017, entry version 120.
RecName: Full=Transcription factor SOX-11;
Name=Sox11; Synonyms=Sox-11;
Mus musculus (Mouse).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
NCBI_TaxID=10090;
[1]
NUCLEOTIDE SEQUENCE [MRNA].
TISSUE=Embryo;
PubMed=9337129;
DOI=10.1002/(SICI)1097-0177(199710)210:2<79::AID-AJA1>3.0.CO;2-6;
Hargrave M., Wright E., Kun J., Emery J., Cooper L., Koopman P.;
"Expression of the Sox11 gene in mouse embryos suggests roles in
neuronal maturation and epithelio-mesenchymal induction.";
Dev. Dyn. 210:79-86(1997).
[2]
NUCLEOTIDE SEQUENCE [MRNA], AND SUBCELLULAR LOCATION.
STRAIN=129/Ola;
PubMed=15456859; DOI=10.1128/MCB.24.20.8834-8846.2004;
Tanaka S., Kamachi Y., Tanouchi A., Hamada H., Jing N., Kondoh H.;
"Interplay of SOX and POU factors in regulation of the nestin gene in
neural primordial cells.";
Mol. Cell. Biol. 24:8834-8846(2004).
[3]
NUCLEOTIDE SEQUENCE.
PubMed=12923295; DOI=10.1073/pnas.1734197100;
Aubert J., Stavridis M.P., Tweedie S., O'Reilly M., Vierlinger K.,
Li M., Ghazal P., Pratt T., Mason J.O., Roy D., Smith A.;
"Screening for mammalian neural genes via fluorescence-activated cell
sorter purification of neural precursors from Sox1-gfp knock-in
mice.";
Proc. Natl. Acad. Sci. U.S.A. 100:11836-11841(2003).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=C57BL/6J; TISSUE=Heart, and Lung;
PubMed=16141072; DOI=10.1126/science.1112014;
Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N.,
Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K.,
Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M.,
Davis M.J., Wilming L.G., Aidinis V., Allen J.E.,
Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L.,
Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M.,
Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R.,
Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G.,
di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G.,
Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M.,
Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E.,
Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N.,
Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T.,
Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H.,
Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K.,
Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J.,
Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L.,
Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K.,
Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P.,
Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O.,
Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G.,
Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M.,
Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C.,
Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y.,
Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B.,
Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K.,
Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A.,
Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K.,
Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C.,
Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J.,
Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y.,
Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T.,
Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N.,
Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N.,
Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S.,
Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J.,
Hayashizaki Y.;
"The transcriptional landscape of the mammalian genome.";
Science 309:1559-1563(2005).
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=C57BL/6J;
PubMed=15489334; DOI=10.1101/gr.2596504;
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA
project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[6]
NUCLEOTIDE SEQUENCE [MRNA] OF 57-112.
PubMed=8441686; DOI=10.1093/nar/21.3.744;
Wright E.M., Snopek B., Koopman P.;
"Seven new members of the Sox gene family expressed during mouse
development.";
Nucleic Acids Res. 21:744-744(1993).
[7]
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
TISSUE=Embryonic brain;
PubMed=15345747; DOI=10.1074/mcp.M400085-MCP200;
Ballif B.A., Villen J., Beausoleil S.A., Schwartz D., Gygi S.P.;
"Phosphoproteomic analysis of the developing mouse brain.";
Mol. Cell. Proteomics 3:1093-1101(2004).
-!- FUNCTION: Transcriptional factor involved in the embryonic
neurogenesis. May also have a role in tissue modeling during
development. {ECO:0000250|UniProtKB:Q7M6Y2}.
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-
ProRule:PRU00267, ECO:0000269|PubMed:15456859}.
-!- TISSUE SPECIFICITY: Expression prominent in the periventricular
cells of the central nervous system, also observed in a wide range
of tissues involved in epithelial-mesenchymal interactions.
-!- DEVELOPMENTAL STAGE: Expression detected from 8.5 dpc through to
13.5 dpc, with a considerable increase in expression apparent at
13.5 dpc.
-----------------------------------------------------------------------
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Distributed under the Creative Commons Attribution-NoDerivs License
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EMBL; AF009414; AAB82425.1; -; mRNA.
EMBL; AB108675; BAC75670.1; -; mRNA.
EMBL; BK001484; DAA01568.1; -; mRNA.
EMBL; AK165693; BAE38341.1; -; mRNA.
EMBL; AK146514; BAE27226.1; -; mRNA.
EMBL; BC062095; AAH62095.1; -; mRNA.
EMBL; Z18960; CAA79485.1; -; mRNA.
CCDS; CCDS25849.1; -.
RefSeq; NP_033260.4; NM_009234.6.
UniGene; Mm.41702; -.
UniGene; Mm.466344; -.
ProteinModelPortal; Q7M6Y2; -.
SMR; Q7M6Y2; -.
BioGrid; 203398; 1.
STRING; 10090.ENSMUSP00000078070; -.
iPTMnet; Q7M6Y2; -.
PhosphoSitePlus; Q7M6Y2; -.
MaxQB; Q7M6Y2; -.
PaxDb; Q7M6Y2; -.
PRIDE; Q7M6Y2; -.
Ensembl; ENSMUST00000079063; ENSMUSP00000078070; ENSMUSG00000063632.
GeneID; 20666; -.
KEGG; mmu:20666; -.
UCSC; uc007nfn.2; mouse.
CTD; 6664; -.
MGI; MGI:98359; Sox11.
eggNOG; KOG0527; Eukaryota.
eggNOG; ENOG410XT0K; LUCA.
GeneTree; ENSGT00760000118988; -.
HOGENOM; HOG000231874; -.
HOVERGEN; HBG005040; -.
InParanoid; Q7M6Y2; -.
KO; K09268; -.
OMA; VKCVFMD; -.
OrthoDB; EOG091G0F15; -.
PhylomeDB; Q7M6Y2; -.
TreeFam; TF351735; -.
ChiTaRS; Sox11; mouse.
PRO; PR:Q7M6Y2; -.
Proteomes; UP000000589; Chromosome 12.
Bgee; ENSMUSG00000063632; -.
CleanEx; MM_SOX11; -.
Genevisible; Q7M6Y2; MM.
GO; GO:0005737; C:cytoplasm; ISS:UniProtKB.
GO; GO:0005634; C:nucleus; IDA:UniProtKB.
GO; GO:0001158; F:enhancer sequence-specific DNA binding; IDA:UniProtKB.
GO; GO:0000979; F:RNA polymerase II core promoter sequence-specific DNA binding; ISO:MGI.
GO; GO:0001105; F:RNA polymerase II transcription coactivator activity; IDA:UniProtKB.
GO; GO:0003705; F:transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding; ISO:MGI.
GO; GO:0003700; F:transcription factor activity, sequence-specific DNA binding; IDA:UniProtKB.
GO; GO:0000976; F:transcription regulatory region sequence-specific DNA binding; IDA:UniProtKB.
GO; GO:0001077; F:transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding; IDA:UniProtKB.
GO; GO:0008135; F:translation factor activity, RNA binding; ISS:UniProtKB.
GO; GO:0003211; P:cardiac ventricle formation; IMP:UniProtKB.
GO; GO:0061386; P:closure of optic fissure; IMP:UniProtKB.
GO; GO:0061303; P:cornea development in camera-type eye; IMP:UniProtKB.
GO; GO:0048557; P:embryonic digestive tract morphogenesis; IMP:UniProtKB.
GO; GO:0048704; P:embryonic skeletal system morphogenesis; IMP:UniProtKB.
GO; GO:0061029; P:eyelid development in camera-type eye; IMP:UniProtKB.
GO; GO:0021782; P:glial cell development; IMP:UniProtKB.
GO; GO:0014009; P:glial cell proliferation; IMP:UniProtKB.
GO; GO:0060022; P:hard palate development; IMP:UniProtKB.
GO; GO:0001822; P:kidney development; IEA:Ensembl.
GO; GO:0002089; P:lens morphogenesis in camera-type eye; IMP:UniProtKB.
GO; GO:0060174; P:limb bud formation; IMP:UniProtKB.
GO; GO:0060425; P:lung morphogenesis; IMP:UniProtKB.
GO; GO:0060548; P:negative regulation of cell death; IMP:UniProtKB.
GO; GO:0010629; P:negative regulation of gene expression; IMP:UniProtKB.
GO; GO:0060253; P:negative regulation of glial cell proliferation; IMP:UniProtKB.
GO; GO:0050672; P:negative regulation of lymphocyte proliferation; ISO:MGI.
GO; GO:0000122; P:negative regulation of transcription from RNA polymerase II promoter; IDA:UniProtKB.
GO; GO:2000678; P:negative regulation of transcription regulatory region DNA binding; ISS:UniProtKB.
GO; GO:0014032; P:neural crest cell development; IMP:UniProtKB.
GO; GO:0001841; P:neural tube formation; IMP:UniProtKB.
GO; GO:0060563; P:neuroepithelial cell differentiation; IMP:UniProtKB.
GO; GO:0003357; P:noradrenergic neuron differentiation; IMP:UniProtKB.
GO; GO:0014003; P:oligodendrocyte development; IEA:Ensembl.
GO; GO:0003151; P:outflow tract morphogenesis; IMP:UniProtKB.
GO; GO:0030513; P:positive regulation of BMP signaling pathway; IMP:UniProtKB.
GO; GO:0008284; P:positive regulation of cell proliferation; IMP:UniProtKB.
GO; GO:0010628; P:positive regulation of gene expression; IMP:UniProtKB.
GO; GO:0035332; P:positive regulation of hippo signaling; IMP:UniProtKB.
GO; GO:0046887; P:positive regulation of hormone secretion; IMP:UniProtKB.
GO; GO:2001111; P:positive regulation of lens epithelial cell proliferation; IMP:UniProtKB.
GO; GO:0050769; P:positive regulation of neurogenesis; IDA:UniProtKB.
GO; GO:0045666; P:positive regulation of neuron differentiation; IDA:UniProtKB.
GO; GO:0045778; P:positive regulation of ossification; IMP:UniProtKB.
GO; GO:0045669; P:positive regulation of osteoblast differentiation; ISS:UniProtKB.
GO; GO:2000648; P:positive regulation of stem cell proliferation; ISS:UniProtKB.
GO; GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; IDA:UniProtKB.
GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IDA:UniProtKB.
GO; GO:0017015; P:regulation of transforming growth factor beta receptor signaling pathway; IEA:Ensembl.
GO; GO:0072395; P:signal transduction involved in cell cycle checkpoint; IEA:Ensembl.
GO; GO:0035914; P:skeletal muscle cell differentiation; IMP:MGI.
GO; GO:0001501; P:skeletal system development; IMP:UniProtKB.
GO; GO:0060023; P:soft palate development; IMP:UniProtKB.
GO; GO:0061053; P:somite development; IMP:UniProtKB.
GO; GO:0021510; P:spinal cord development; IMP:UniProtKB.
GO; GO:0048485; P:sympathetic nervous system development; IMP:UniProtKB.
GO; GO:0060412; P:ventricular septum morphogenesis; IMP:UniProtKB.
Gene3D; 1.10.30.10; -; 1.
InterPro; IPR009071; HMG_box_dom.
InterPro; IPR029551; SOX-11.
InterPro; IPR017386; SOX-11/4.
PANTHER; PTHR10270:SF266; PTHR10270:SF266; 1.
Pfam; PF00505; HMG_box; 1.
PIRSF; PIRSF038098; SOX-12/11/4a; 1.
SMART; SM00398; HMG; 1.
SUPFAM; SSF47095; SSF47095; 1.
PROSITE; PS50118; HMG_BOX_2; 1.
1: Evidence at protein level;
Complete proteome; Developmental protein; Differentiation;
DNA-binding; Neurogenesis; Nucleus; Reference proteome; Transcription;
Transcription regulation.
CHAIN 1 395 Transcription factor SOX-11.
/FTId=PRO_0000048751.
DNA_BIND 49 117 HMG box. {ECO:0000255|PROSITE-
ProRule:PRU00267}.
COMPBIAS 188 214 Asp/Glu-rich (highly acidic).
COMPBIAS 297 308 Poly-Ser.
CONFLICT 103 103 E -> G (in Ref. 1; AAB82425).
{ECO:0000305}.
CONFLICT 147 147 A -> T (in Ref. 1; AAB82425).
{ECO:0000305}.
CONFLICT 171 171 A -> V (in Ref. 1; AAB82425).
{ECO:0000305}.
CONFLICT 177 177 A -> G (in Ref. 1 and 2). {ECO:0000305}.
CONFLICT 192 196 EDDDE -> DEEDD (in Ref. 1; AAB82425).
{ECO:0000305}.
CONFLICT 225 225 T -> A (in Ref. 1; AAB82425).
{ECO:0000305}.
CONFLICT 280 281 QP -> EA (in Ref. 1; AAB82425).
{ECO:0000305}.
SEQUENCE 395 AA; 42629 MW; AFA34270A054C6C5 CRC64;
MVQQAESSEA ESNLPRDALD TEEGEFMACS PVALDESDPD WCKTASGHIK RPMNAFMVWS
KIERRKIMEQ SPDMHNAEIS KRLGKRWKML KDSEKIPFIR EAERLRLKHM ADYPDYKYRP
RKKPKTDPAA KPSAGQSPDK SAAGAKAAKG PGKKCAKLKA PAGKAGAGKA AQPGDCAAGK
AAKCVFLDDD DEDDDEDDEL QLRPKPDADD DDDEPAHSHL LPPPTQQQPP QLLRRYSVAK
VPASPTLSSA AESPEGASLY DEVRAGGRLY YSFKNITKQQ PPPAPPALSP ASSRCVSTSS
SSGSSSGSGA EDADDLMFDL SLNFSQGAHS ACEQPLGAGA AGNLSLSLVD KDLDSFSEGS
LGSHFEFPDY CTPELSEMIA GDWLEANFSD LVFTY


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