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Transcription factor TIP2 (Basic helix-loop-helix protein 142) (OsbHLH142) (Basic helix-loop-helix protein TIP2) (TDR INTERACTING PROTEIN2)

 TIP2_ORYSJ              Reviewed;         379 AA.
Q5JNS0; A0A0P0V176;
09-JUL-2014, integrated into UniProtKB/Swiss-Prot.
15-FEB-2005, sequence version 1.
23-MAY-2018, entry version 93.
RecName: Full=Transcription factor TIP2;
AltName: Full=Basic helix-loop-helix protein 142 {ECO:0000305};
Short=OsbHLH142 {ECO:0000303|PubMed:16896230};
AltName: Full=Basic helix-loop-helix protein TIP2;
AltName: Full=TDR INTERACTING PROTEIN2;
Name=TIP2; Synonyms=BHLH142 {ECO:0000305};
OrderedLocusNames=LOC_Os01g18870, Os01g0293100; ORFNames=P0706B05.43;
Oryza sativa subsp. japonica (Rice).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade;
Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
NCBI_TaxID=39947;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Nipponbare;
PubMed=12447438; DOI=10.1038/nature01184;
Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M.,
Okamoto M., Ando T., Aoki H., Arita K., Hamada M., Harada C.,
Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M.,
Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K.,
Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I.,
Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y.,
Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M.,
Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M.,
Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K.,
Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K.,
Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y.,
Yano M., Jiang J., Gojobori T.;
"The genome sequence and structure of rice chromosome 1.";
Nature 420:312-316(2002).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Nipponbare;
PubMed=16100779; DOI=10.1038/nature03895;
International rice genome sequencing project (IRGSP);
"The map-based sequence of the rice genome.";
Nature 436:793-800(2005).
[3]
GENOME REANNOTATION.
STRAIN=cv. Nipponbare;
PubMed=18089549; DOI=10.1093/nar/gkm978;
The rice annotation project (RAP);
"The rice annotation project database (RAP-DB): 2008 update.";
Nucleic Acids Res. 36:D1028-D1033(2008).
[4]
GENOME REANNOTATION.
STRAIN=cv. Nipponbare;
PubMed=24280374; DOI=10.1186/1939-8433-6-4;
Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H.,
McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S.,
Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L.,
Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T.,
Buell C.R., Matsumoto T.;
"Improvement of the Oryza sativa Nipponbare reference genome using
next generation sequence and optical map data.";
Rice 6:4-4(2013).
[5]
GENE FAMILY, AND NOMENCLATURE.
PubMed=16896230; DOI=10.1104/pp.106.080580;
Li X., Duan X., Jiang H., Sun Y., Tang Y., Yuan Z., Guo J., Liang W.,
Chen L., Yin J., Ma H., Wang J., Zhang D.;
"Genome-wide analysis of basic/helix-loop-helix transcription factor
family in rice and Arabidopsis.";
Plant Physiol. 141:1167-1184(2006).
[6]
FUNCTION, INTERACTION WITH TDR, SUBCELLULAR LOCATION, TISSUE
SPECIFICITY, AND DISRUPTION PHENOTYPE.
STRAIN=cv. 9522;
PubMed=24755456; DOI=10.1105/tpc.114.123745;
Fu Z., Yu J., Cheng X., Zong X., Xu J., Chen M., Li Z., Zhang D.,
Liang W.;
"The rice basic helix-loop-helix transcription factor TDR INTERACTING
PROTEIN2 is a central switch in early anther development.";
Plant Cell 26:1512-1524(2014).
[7]
FUNCTION, AND INTERACTION WITH TDR.
PubMed=24894043; DOI=10.1105/tpc.114.126292;
Ko S.S., Li M.J., Sun-Ben Ku M., Ho Y.C., Lin Y.J., Chuang M.H.,
Hsing H.X., Lien Y.C., Yang H.T., Chang H.C., Chan M.T.;
"The bHLH142 transcription factor coordinates with TDR1 to modulate
the expression of EAT1 and regulate pollen development in rice.";
Plant Cell 26:2486-2504(2014).
-!- FUNCTION: Transcription factor that binds to the E-box-containing
promoter regions of the transcription factors TDR and EAT1,
activating their expression. May have a role in specifying the
cell pattern of the inner anther walls and functioning in meiosis
progression. Required for male reproduction (PubMed:24755456).
Acts downstream of UDT1 and GAMYB, but upstream of TDR1 and EAT1
in pollen development (PubMed:24894043).
{ECO:0000269|PubMed:24755456, ECO:0000269|PubMed:24894043}.
-!- SUBUNIT: Homodimer (By similarity). Interacts with TDR, but not
with EAT1 (PubMed:24755456, PubMed:24894043). {ECO:0000250,
ECO:0000269|PubMed:24755456, ECO:0000269|PubMed:24894043}.
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-
ProRule:PRU00981, ECO:0000269|PubMed:24755456}.
-!- TISSUE SPECIFICITY: Highly expressed in anthers; strong expression
in the middle layer and tapetum, and weak expression in the
endothecium. {ECO:0000269|PubMed:24755456}.
-!- DEVELOPMENTAL STAGE: In anthers, expressed from the meiosis stage
to mitosis, with maximum levels at stages 7 and 8, when meiosis
initiates, and when endothecium and the middle layer become
condensed, respectively.
-!- DISRUPTION PHENOTYPE: Has normal vegetative growth, inflorescence
and flower morphology, however has smaller anthers and does not
produce mature pollen grains during reproductive stage. After
stage 6, during which anther forms four somatic layers, the three
inner anther wall layers remain undifferentiated. Meiosis
progresses normally from leptotene stage to metaphase I, but is
arrasted at anaphase I and no cytokinesis occurs at prophase II,
resulting in degenerated meiocytes. {ECO:0000269|PubMed:24755456}.
-!- SIMILARITY: Belongs to the bHLH protein family.
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EMBL; AP002482; BAD86887.1; -; Genomic_DNA.
EMBL; AP008207; BAF04709.1; -; Genomic_DNA.
EMBL; AP014957; BAS71669.1; -; Genomic_DNA.
RefSeq; XP_015645943.1; XM_015790457.1.
UniGene; Os.54828; -.
ProteinModelPortal; Q5JNS0; -.
SMR; Q5JNS0; -.
STRING; 39947.LOC_Os01g18870.1; -.
PaxDb; Q5JNS0; -.
EnsemblPlants; Os01t0293100-01; Os01t0293100-01; Os01g0293100.
GeneID; 4325164; -.
Gramene; Os01t0293100-01; Os01t0293100-01; Os01g0293100.
KEGG; osa:4325164; -.
eggNOG; ENOG410JSU4; Eukaryota.
eggNOG; ENOG41108H2; LUCA.
HOGENOM; HOG000071096; -.
InParanoid; Q5JNS0; -.
OMA; RREMQGD; -.
OrthoDB; EOG09360HGX; -.
Proteomes; UP000059680; Chromosome 1.
Genevisible; Q5JNS0; OS.
GO; GO:0005634; C:nucleus; IC:Gramene.
GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW.
GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW.
CDD; cd00083; HLH; 1.
Gene3D; 4.10.280.10; -; 1.
InterPro; IPR011598; bHLH_dom.
InterPro; IPR036638; HLH_DNA-bd_sf.
Pfam; PF00010; HLH; 1.
SMART; SM00353; HLH; 1.
SUPFAM; SSF47459; SSF47459; 1.
PROSITE; PS50888; BHLH; 1.
1: Evidence at protein level;
Complete proteome; DNA-binding; Nucleus; Reference proteome;
Transcription; Transcription regulation.
CHAIN 1 379 Transcription factor TIP2.
/FTId=PRO_0000429745.
DOMAIN 173 222 bHLH. {ECO:0000255|PROSITE-
ProRule:PRU00981}.
REGION 173 186 Basic motif; degenerate.
{ECO:0000255|PROSITE-ProRule:PRU00981}.
REGION 187 222 Helix-loop-helix motif.
{ECO:0000255|PROSITE-ProRule:PRU00981}.
COMPBIAS 25 118 Ala-rich.
SEQUENCE 379 AA; 40706 MW; 88840ACC6D4353B5 CRC64;
MYHPQCELLM PLESLEMDVG QSHLAAAVAA AMPGELNFHL LHSLDAAAAA ASSTAASASS
QPTVDYFFGG ADQQPPPPAA MQYDQLAAPH HHQTVAMLRD YYGGHYPPAA AAAAATEAYF
RGGPRTAGSS SLVFGPADDE SAFMVGPFES SPTPRSGGGR KRSRATAGFH GGGPANGVEK
KEKQRRLRLT EKYNALMLLI PNRTKEDRAT VISDAIEYIQ ELGRTVEELT LLVEKKRRRR
EMQGDVVDAA TSSVVAGMDQ AAESSEGEVM AAAAMGAVAP PPRQAPIRST YIQRRSKETF
VDVRIVEDDV NIKLTKRRRD GCLAAASRAL DDLRLDLVHL SGGKIGDCHI YMFNTKIHSG
SPVFASAVAS RLIEVVDEY


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