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Transcription factor bHLH153 (BHLH transcription factor alpha) (bHLH alpha) (Basic helix-loop-helix protein 153) (AtbHLH153) (bHLH 153) (bHLH transcription factor bHLH153)

 BH153_ARATH             Reviewed;         149 AA.
Q7XJU2; B9DHI3; Q8LAF0; Q8VY82; Q9SYL2;
12-APR-2017, integrated into UniProtKB/Swiss-Prot.
01-OCT-2003, sequence version 1.
25-OCT-2017, entry version 110.
RecName: Full=Transcription factor bHLH153;
AltName: Full=BHLH transcription factor alpha;
Short=bHLH alpha {ECO:0000312|EMBL:CAE09167.1};
AltName: Full=Basic helix-loop-helix protein 153;
Short=AtbHLH153 {ECO:0000303|PubMed:14600211};
Short=bHLH 153;
AltName: Full=bHLH transcription factor bHLH153;
Name=BHLH153 {ECO:0000303|PubMed:14600211};
OrderedLocusNames=At1g05710 {ECO:0000312|Araport:AT1G05710};
ORFNames=F3F20.16 {ECO:0000312|EMBL:AAD30624.1};
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), GENE FAMILY, AND NOMENCLATURE.
PubMed=14600211; DOI=10.1105/tpc.151140;
Bailey P.C., Martin C., Toledo-Ortiz G., Quail P.H., Huq E.,
Heim M.A., Jakoby M., Werber M., Weisshaar B.;
"Update on the basic helix-loop-helix transcription factor gene family
in Arabidopsis thaliana.";
Plant Cell 15:2497-2502(2003).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=11130712; DOI=10.1038/35048500;
Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S.,
White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y.,
Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W.,
Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K.,
Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y.,
Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L.,
Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E.,
Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B.,
Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P.,
Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A.,
Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I.,
Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D.,
Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M.,
Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M.,
Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.;
"Sequence and analysis of chromosome 1 of the plant Arabidopsis
thaliana.";
Nature 408:816-820(2000).
[3]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
The Arabidopsis Information Portal (Araport);
Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
STRAIN=cv. Columbia;
PubMed=14593172; DOI=10.1126/science.1088305;
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J.,
Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F.,
Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.,
Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J.,
Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y.,
Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P.,
Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F.,
Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M.,
Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J.,
Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T.,
Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y.,
Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis
genome.";
Science 302:842-846(2003).
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
STRAIN=cv. Columbia;
Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J.,
Hayashizaki Y., Shinozaki K.;
"Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
[6]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
Feldmann K.A.;
"Full-length cDNA from Arabidopsis thaliana.";
Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
[7]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 5-149 (ISOFORM 1).
STRAIN=cv. Columbia;
TISSUE=Rosette leaf {ECO:0000312|EMBL:BAH20200.1};
PubMed=19423640; DOI=10.1093/dnares/dsp009;
Iida K., Fukami-Kobayashi K., Toyoda A., Sakaki Y., Kobayashi M.,
Seki M., Shinozaki K.;
"Analysis of multiple occurrences of alternative splicing events in
Arabidopsis thaliana using novel sequenced full-length cDNAs.";
DNA Res. 16:155-164(2009).
-!- INTERACTION:
Q93Y00:BHLH7; NbExp=4; IntAct=EBI-4427748, EBI-4442198;
Q9S7W5:TCP13; NbExp=3; IntAct=EBI-4427748, EBI-4424877;
Q93Z00:TCP14; NbExp=3; IntAct=EBI-4427748, EBI-4424563;
Q9C9L2:TCP15; NbExp=3; IntAct=EBI-4427748, EBI-4426144;
Q9LQF0:TCP23; NbExp=3; IntAct=EBI-4427748, EBI-15192297;
Q8LPR5:TCP4; NbExp=3; IntAct=EBI-4427748, EBI-15192325;
Q9FMX2:TCP7; NbExp=3; IntAct=EBI-4427748, EBI-15192677;
O64647:TCP9; NbExp=3; IntAct=EBI-4427748, EBI-9838721;
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-
ProRule:PRU00981}.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=2;
Name=1;
IsoId=Q7XJU2-1; Sequence=Displayed;
Name=2;
IsoId=Q7XJU2-2; Sequence=VSP_058844;
Note=May be due to intron retention.;
-!- SIMILARITY: Belongs to the bHLH protein family. {ECO:0000305}.
-!- SEQUENCE CAUTION:
Sequence=AAD30624.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
Sequence=AAM65410.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};
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EMBL; AJ576040; CAE09167.1; -; mRNA.
EMBL; AC007153; AAD30624.1; ALT_SEQ; Genomic_DNA.
EMBL; CP002684; AEE27879.1; -; Genomic_DNA.
EMBL; CP002684; AEE27880.1; -; Genomic_DNA.
EMBL; CP002684; AEE27882.1; -; Genomic_DNA.
EMBL; CP002684; AEE27883.1; -; Genomic_DNA.
EMBL; CP002684; AEE27881.1; -; Genomic_DNA.
EMBL; CP002684; ANM60670.1; -; Genomic_DNA.
EMBL; CP002684; ANM60671.1; -; Genomic_DNA.
EMBL; CP002684; ANM60672.1; -; Genomic_DNA.
EMBL; CP002684; ANM60673.1; -; Genomic_DNA.
EMBL; CP002684; ANM60674.1; -; Genomic_DNA.
EMBL; CP002684; ANM60675.1; -; Genomic_DNA.
EMBL; AY072363; AAL62355.1; -; mRNA.
EMBL; BT006558; AAP21366.1; -; mRNA.
EMBL; AK230257; BAF02059.1; -; mRNA.
EMBL; AY087858; AAM65410.1; ALT_INIT; mRNA.
EMBL; AK317536; BAH20200.1; -; mRNA.
PIR; D86191; D86191.
RefSeq; NP_001184916.1; NM_001197987.1. [Q7XJU2-1]
RefSeq; NP_001322940.1; NM_001331570.1. [Q7XJU2-2]
RefSeq; NP_001322941.1; NM_001331568.1. [Q7XJU2-1]
RefSeq; NP_001322942.1; NM_001331567.1. [Q7XJU2-2]
RefSeq; NP_001322943.1; NM_001331566.1. [Q7XJU2-1]
RefSeq; NP_001322944.1; NM_001331565.1. [Q7XJU2-1]
RefSeq; NP_001322945.1; NM_001331564.1. [Q7XJU2-2]
RefSeq; NP_563746.1; NM_100451.4. [Q7XJU2-1]
RefSeq; NP_849597.1; NM_179266.3. [Q7XJU2-2]
RefSeq; NP_973764.1; NM_202035.4. [Q7XJU2-1]
RefSeq; NP_973765.1; NM_202036.3. [Q7XJU2-1]
UniGene; At.42378; -.
UniGene; At.72027; -.
ProteinModelPortal; Q7XJU2; -.
IntAct; Q7XJU2; 38.
STRING; 3702.AT1G05710.2; -.
iPTMnet; Q7XJU2; -.
EnsemblPlants; AT1G05710.1; AT1G05710.1; AT1G05710. [Q7XJU2-1]
EnsemblPlants; AT1G05710.10; AT1G05710.10; AT1G05710. [Q7XJU2-2]
EnsemblPlants; AT1G05710.11; AT1G05710.11; AT1G05710. [Q7XJU2-1]
EnsemblPlants; AT1G05710.12; AT1G05710.12; AT1G05710. [Q7XJU2-1]
EnsemblPlants; AT1G05710.13; AT1G05710.13; AT1G05710. [Q7XJU2-2]
EnsemblPlants; AT1G05710.14; AT1G05710.14; AT1G05710. [Q7XJU2-1]
EnsemblPlants; AT1G05710.2; AT1G05710.2; AT1G05710. [Q7XJU2-2]
EnsemblPlants; AT1G05710.3; AT1G05710.3; AT1G05710. [Q7XJU2-1]
EnsemblPlants; AT1G05710.4; AT1G05710.4; AT1G05710. [Q7XJU2-1]
EnsemblPlants; AT1G05710.5; AT1G05710.5; AT1G05710. [Q7XJU2-1]
EnsemblPlants; AT1G05710.7; AT1G05710.7; AT1G05710. [Q7XJU2-2]
GeneID; 837078; -.
Gramene; AT1G05710.1; AT1G05710.1; AT1G05710.
Gramene; AT1G05710.10; AT1G05710.10; AT1G05710.
Gramene; AT1G05710.11; AT1G05710.11; AT1G05710.
Gramene; AT1G05710.12; AT1G05710.12; AT1G05710.
Gramene; AT1G05710.13; AT1G05710.13; AT1G05710.
Gramene; AT1G05710.14; AT1G05710.14; AT1G05710.
Gramene; AT1G05710.2; AT1G05710.2; AT1G05710.
Gramene; AT1G05710.3; AT1G05710.3; AT1G05710.
Gramene; AT1G05710.4; AT1G05710.4; AT1G05710.
Gramene; AT1G05710.5; AT1G05710.5; AT1G05710.
Gramene; AT1G05710.7; AT1G05710.7; AT1G05710.
KEGG; ath:AT1G05710; -.
Araport; AT1G05710; -.
eggNOG; ENOG410IYP7; Eukaryota.
eggNOG; ENOG410YRG3; LUCA.
HOGENOM; HOG000240890; -.
OMA; SRGLCIV; -.
OrthoDB; EOG09360O0W; -.
PRO; PR:Q7XJU2; -.
Proteomes; UP000006548; Chromosome 1.
ExpressionAtlas; Q7XJU2; baseline and differential.
GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW.
GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW.
CDD; cd00083; HLH; 1.
Gene3D; 4.10.280.10; -; 1.
InterPro; IPR011598; bHLH_dom.
InterPro; IPR036638; HLH_DNA-bd_sf.
SUPFAM; SSF47459; SSF47459; 1.
PROSITE; PS50888; BHLH; 1.
1: Evidence at protein level;
Alternative splicing; Complete proteome; DNA-binding; Nucleus;
Reference proteome; Transcription; Transcription regulation.
CHAIN 1 149 Transcription factor bHLH153.
/FTId=PRO_0000439391.
DOMAIN 27 76 bHLH. {ECO:0000255|PROSITE-
ProRule:PRU00981}.
VAR_SEQ 81 81 K -> KVCSSIPSMIHSSLSEFPCSFVQ (in isoform
2).
/FTId=VSP_058844.
CONFLICT 5 5 R -> G (in Ref. 6; AAM65410).
{ECO:0000305}.
CONFLICT 35 35 S -> N (in Ref. 6; AAM65410).
{ECO:0000305}.
CONFLICT 91 91 V -> I (in Ref. 6; AAM65410).
{ECO:0000305}.
SEQUENCE 149 AA; 16611 MW; C1BA62D129E31831 CRC64;
MEFSRDAGMM MENKRNVCSL GESSIKRHKS DLSFSSKERK DKVGERISAL QQIVSPYGKT
DTASVLLDAM HYIEFLHEQV KVLSAPYLQT VPDATQEELE QYSLRNRGLC LVPMENTVGV
AQSNGADIWA PVKTPLSPAF SVTSQSPFR


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