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Transcription factor tau 138 kDa subunit (TFIIIC 138 kDa subunit) (Transcription factor C subunit 3)

 TFC3_YEAST              Reviewed;        1160 AA.
P34111; D6VPL5;
01-FEB-1994, integrated into UniProtKB/Swiss-Prot.
01-FEB-1994, sequence version 1.
05-DEC-2018, entry version 152.
RecName: Full=Transcription factor tau 138 kDa subunit;
AltName: Full=TFIIIC 138 kDa subunit;
AltName: Full=Transcription factor C subunit 3;
Name=TFC3; Synonyms=TSV115; OrderedLocusNames=YAL001C; ORFNames=FUN24;
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast).
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina;
Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces.
NCBI_TaxID=559292;
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA], PROTEIN SEQUENCE OF 124-143;
331-347; 440-453; 508-520 AND 539-547, FUNCTION, AND IDENTIFICATION IN
TFIIIC.
STRAIN=ATCC 204508 / S288c;
PubMed=1279682; DOI=10.1073/pnas.89.21.10512;
Lefebvre O., Carles C., Conesa C., Swanson R.N., Bouet F., Riva M.,
Sentenac A.;
"TFC3: gene encoding the B-block binding subunit of the yeast
transcription factor IIIC.";
Proc. Natl. Acad. Sci. U.S.A. 89:10512-10516(1992).
[2]
NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND MUTAGENESIS OF GLY-349.
PubMed=8083243;
Lefebvre O., Rueth J., Sentenac A.;
"A mutation in the largest subunit of yeast TFIIIC affects tRNA and 5
S RNA synthesis. Identification of two classes of suppressors.";
J. Biol. Chem. 269:23374-23381(1994).
[3]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
STRAIN=ATCC 204511 / S288c / AB972;
PubMed=7941740; DOI=10.1002/yea.320100413;
Clark M.W., Keng T., Storms R.K., Zhong W.-W., Fortin N., Zeng B.,
Delaney S., Ouellette B.F.F., Barton A.B., Kaback D.B., Bussey H.;
"Sequencing of chromosome I of Saccharomyces cerevisiae: analysis of
the 42 kbp SPO7-CENI-CDC15 region.";
Yeast 10:535-541(1994).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=ATCC 204508 / S288c;
PubMed=7731988; DOI=10.1073/pnas.92.9.3809;
Bussey H., Kaback D.B., Zhong W.-W., Vo D.H., Clark M.W., Fortin N.,
Hall J., Ouellette B.F.F., Keng T., Barton A.B., Su Y., Davies C.J.,
Storms R.K.;
"The nucleotide sequence of chromosome I from Saccharomyces
cerevisiae.";
Proc. Natl. Acad. Sci. U.S.A. 92:3809-3813(1995).
[5]
GENOME REANNOTATION.
STRAIN=ATCC 204508 / S288c;
PubMed=24374639; DOI=10.1534/g3.113.008995;
Engel S.R., Dietrich F.S., Fisk D.G., Binkley G., Balakrishnan R.,
Costanzo M.C., Dwight S.S., Hitz B.C., Karra K., Nash R.S., Weng S.,
Wong E.D., Lloyd P., Skrzypek M.S., Miyasato S.R., Simison M.,
Cherry J.M.;
"The reference genome sequence of Saccharomyces cerevisiae: Then and
now.";
G3 (Bethesda) 4:389-398(2014).
[6]
FUNCTION.
PubMed=2651441;
Gabrielsen O.S., Marzouki N., Ruet A., Sentenac A., Fromageot P.;
"Two polypeptide chains in yeast transcription factor tau interact
with DNA.";
J. Biol. Chem. 264:7505-7511(1989).
[7]
IDENTIFICATION IN TFIIIC.
PubMed=2180956;
Parsons M.C., Weil P.A.;
"Purification and characterization of Saccharomyces cerevisiae
transcription factor TFIIIC. Polypeptide composition defined with
polyclonal antibodies.";
J. Biol. Chem. 265:5095-5103(1990).
[8]
INTERACTION WITH TFC1; TFC4 AND TFC6, AND PHOSPHORYLATION.
PubMed=7688737;
Conesa C., Swanson R.N., Schultz P., Oudet P., Sentenac A.;
"On the subunit composition, stoichiometry, and phosphorylation of the
yeast transcription factor TFIIIC/tau.";
J. Biol. Chem. 268:18047-18052(1993).
[9]
FUNCTION.
PubMed=9418847; DOI=10.1128/MCB.18.1.1;
Arrebola R., Manaud N., Rozenfeld S., Marsolier M.C., Lefebvre O.,
Carles C., Thuriaux P., Conesa C., Sentenac A.;
"Tau91, an essential subunit of yeast transcription factor IIIC,
cooperates with tau138 in DNA binding.";
Mol. Cell. Biol. 18:1-9(1998).
[10]
INTERACTION WITH TFC1 AND TFC6.
PubMed=12533520; DOI=10.1074/jbc.M213310200;
Jourdain S., Acker J., Ducrot C., Sentenac A., Lefebvre O.;
"The tau95 subunit of yeast TFIIIC influences upstream and downstream
functions of TFIIIC.DNA complexes.";
J. Biol. Chem. 278:10450-10457(2003).
[11]
SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
PubMed=14562095; DOI=10.1038/nature02026;
Huh W.-K., Falvo J.V., Gerke L.C., Carroll A.S., Howson R.W.,
Weissman J.S., O'Shea E.K.;
"Global analysis of protein localization in budding yeast.";
Nature 425:686-691(2003).
[12]
LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
PubMed=14562106; DOI=10.1038/nature02046;
Ghaemmaghami S., Huh W.-K., Bower K., Howson R.W., Belle A.,
Dephoure N., O'Shea E.K., Weissman J.S.;
"Global analysis of protein expression in yeast.";
Nature 425:737-741(2003).
[13]
SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
STRAIN=ATCC 76625 / YPH499;
PubMed=14576278; DOI=10.1073/pnas.2135385100;
Sickmann A., Reinders J., Wagner Y., Joppich C., Zahedi R.P.,
Meyer H.E., Schoenfisch B., Perschil I., Chacinska A., Guiard B.,
Rehling P., Pfanner N., Meisinger C.;
"The proteome of Saccharomyces cerevisiae mitochondria.";
Proc. Natl. Acad. Sci. U.S.A. 100:13207-13212(2003).
[14]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-546, AND IDENTIFICATION
BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
PubMed=18407956; DOI=10.1074/mcp.M700468-MCP200;
Albuquerque C.P., Smolka M.B., Payne S.H., Bafna V., Eng J., Zhou H.;
"A multidimensional chromatography technology for in-depth
phosphoproteome analysis.";
Mol. Cell. Proteomics 7:1389-1396(2008).
-!- FUNCTION: TFIIIC mediates tRNA and 5S RNA gene activation by
binding to intragenic promoter elements. Upstream of the
transcription start site, TFIIIC assembles the initiation complex
TFIIIB-TFIIIC-tDNA, which is sufficient for RNA polymerase III
recruitment and function. Part of the tauB domain of TFIIIC that
binds boxB DNA promoter sites of tRNA and similar genes. TFC3 is
essential for cell viability. Cooperates with TFC6 in DNA binding.
{ECO:0000269|PubMed:1279682, ECO:0000269|PubMed:2651441,
ECO:0000269|PubMed:9418847}.
-!- SUBUNIT: Component of the TFIIIC complex composed of TFC1, TFC3,
TFC4, TFC6, TFC7 and TFC8. The subunits are organized in two
globular domains, tauA and tauB, connected by a proteolysis-
sensitive and flexible linker. Interacts with TFC1, TFC4 and TFC6.
{ECO:0000269|PubMed:12533520, ECO:0000269|PubMed:1279682,
ECO:0000269|PubMed:2180956, ECO:0000269|PubMed:7688737}.
-!- SUBCELLULAR LOCATION: Nucleus. Mitochondrion.
-!- MISCELLANEOUS: Present with 125 molecules/cell in log phase SD
medium. {ECO:0000269|PubMed:14562106}.
-----------------------------------------------------------------------
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Distributed under the Creative Commons Attribution (CC BY 4.0) License
-----------------------------------------------------------------------
EMBL; M98261; AAA34378.1; -; Genomic_DNA.
EMBL; L22015; AAC04956.1; -; Genomic_DNA.
EMBL; BK006935; DAA06985.1; -; Genomic_DNA.
PIR; A46423; A46423.
RefSeq; NP_009400.1; NM_001178148.1.
PDB; 5AIM; X-ray; 1.40 A; A/B=546-641.
PDBsum; 5AIM; -.
ProteinModelPortal; P34111; -.
SMR; P34111; -.
BioGrid; 31789; 170.
ComplexPortal; CPX-1656; Transcription factor TFIIIC complex.
DIP; DIP-6739N; -.
IntAct; P34111; 3.
MINT; P34111; -.
STRING; 4932.YAL001C; -.
iPTMnet; P34111; -.
MaxQB; P34111; -.
PaxDb; P34111; -.
PRIDE; P34111; -.
EnsemblFungi; YAL001C_mRNA; YAL001C_mRNA; YAL001C.
GeneID; 851262; -.
KEGG; sce:YAL001C; -.
SGD; S000000001; TFC3.
HOGENOM; HOG000142056; -.
InParanoid; P34111; -.
KO; K15204; -.
OMA; MSSMIQR; -.
OrthoDB; EOG092C06YM; -.
BioCyc; YEAST:G3O-28816-MONOMER; -.
PRO; PR:P34111; -.
Proteomes; UP000002311; Chromosome I.
GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
GO; GO:0005654; C:nucleoplasm; TAS:Reactome.
GO; GO:0000127; C:transcription factor TFIIIC complex; IDA:SGD.
GO; GO:0001002; F:RNA polymerase III type 1 promoter sequence-specific DNA binding; IBA:GO_Central.
GO; GO:0001003; F:RNA polymerase III type 2 promoter sequence-specific DNA binding; IBA:GO_Central.
GO; GO:0042791; P:5S class rRNA transcription by RNA polymerase III; IDA:SGD.
GO; GO:0071168; P:protein localization to chromatin; IMP:SGD.
GO; GO:0070898; P:RNA polymerase III preinitiation complex assembly; IEA:GOC.
GO; GO:0006383; P:transcription by RNA polymerase III; IDA:SGD.
GO; GO:0006384; P:transcription initiation from RNA polymerase III promoter; IBA:GO_Central.
CDD; cd16169; Tau138_eWH; 1.
InterPro; IPR035625; Tfc3_eWH.
InterPro; IPR007309; TFIIIC_Bblock-bd.
Pfam; PF04182; B-block_TFIIIC; 1.
1: Evidence at protein level;
3D-structure; Complete proteome; Direct protein sequencing;
DNA-binding; Mitochondrion; Nucleus; Phosphoprotein;
Reference proteome; Transcription; Transcription regulation.
CHAIN 1 1160 Transcription factor tau 138 kDa subunit.
/FTId=PRO_0000072497.
MOD_RES 546 546 Phosphoserine.
{ECO:0000244|PubMed:18407956}.
MUTAGEN 349 349 G->E: In TSV115; thermosensitive. Level
of TFIIIC and its affinity for tDNA
reduced. tDNA binding activity very
sensitive to mild heat treatments, and
TFIIIC-DNA interaction inhibited at
moderate salt concentrations.
{ECO:0000269|PubMed:8083243}.
HELIX 546 565 {ECO:0000244|PDB:5AIM}.
STRAND 568 573 {ECO:0000244|PDB:5AIM}.
HELIX 574 584 {ECO:0000244|PDB:5AIM}.
HELIX 593 604 {ECO:0000244|PDB:5AIM}.
STRAND 607 612 {ECO:0000244|PDB:5AIM}.
TURN 614 616 {ECO:0000244|PDB:5AIM}.
STRAND 619 622 {ECO:0000244|PDB:5AIM}.
HELIX 628 637 {ECO:0000244|PDB:5AIM}.
SEQUENCE 1160 AA; 132108 MW; 3ACB7893ED536581 CRC64;
MVLTIYPDEL VQIVSDKIAS NKGKITLNQL WDISGKYFDL SDKKVKQFVL SCVILKKDIE
VYCDGAITTK NVTDIIGDAN HSYSVGITED SLWTLLTGYT KKESTIGNSA FELLLEVAKS
GEKGINTMDL AQVTGQDPRS VTGRIKKINH LLTSSQLIYK GHVVKQLKLK KFSHDGVDSN
PYINIRDHLA TIVEVVKRSK NGIRQIIDLK RELKFDKEKR LSKAFIAAIA WLDEKEYLKK
VLVVSPKNPA IKIRCVKYVK DIPDSKGSPS FEYDSNSADE DSVSDSKAAF EDEDLVEGLD
NFNATDLLQN QGLVMEEKED AVKNEVLLNR FYPLQNQTYD IADKSGLKGI STMDVVNRIT
GKEFQRAFTK SSEYYLESVD KQKENTGGYR LFRIYDFEGK KKFFRLFTAQ NFQKLTNAED
EISVPKGFDE LGKSRTDLKT LNEDNFVALN NTVRFTTDSD GQDIFFWHGE LKIPPNSKKT
PNKNKRKRQV KNSTNASVAG NISNPKRIKL EQHVSTAQEP KSAEDSPSSN GGTVVKGKVV
NFGGFSARSL RSLQRQRAIL KVMNTIGGVA YLREQFYESV SKYMGSTTTL DKKTVRGDVD
LMVESEKLGA RTEPVSGRKI IFLPTVGEDA IQRYILKEKD SKKATFTDVI HDTEIYFFDQ
TEKNRFHRGK KSVERIRKFQ NRQKNAKIKA SDDAISKKST SVNVSDGKIK RRDKKVSAGR
TTVVVENTKE DKTVYHAGTK DGVQALIRAV VVTKSIKNEI MWDKITKLFP NNSLDNLKKK
WTARRVRMGH SGWRAYVDKW KKMLVLAIKS EKISLRDVEE LDLIKLLDIW TSFDEKEIKR
PLFLYKNYEE NRKKFTLVRD DTLTHSGNDL AMSSMIQREI SSLKKTYTRK ISASTKDLSK
SQSDDYIRTV IRSILIESPS TTRNEIEALK NVGNESIDNV IMDMAKEKQI YLHGSKLECT
DTLPDILENR GNYKDFGVAF QYRCKVNELL EAGNAIVINQ EPSDISSWVL IDLISGELLN
MDVIPMVRNV RPLTYTSRRF EIRTLTPPLI IYANSQTKLN TARKSAVKVP LGKPFSRLWV
NGSGSIRPNI WKQVVTMVVN EIIFHPGITL SRLQSRCREV LSLHEISEIC KWLLERQVLI
TTDFDGYWVN HNWYSIYEST


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